View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_low_13 (Length: 380)
Name: NF3564_low_13
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 25565357 - 25564992
Alignment:
| Q |
1 |
tcaacctcaaatttctagtgcaacataaggaaaggttaaacaatacaacatattgaatgaaaattaaacaaacaaaccatgcaaataattgttcacaagt |
100 |
Q |
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| T |
25565357 |
tcaacctcaaatttctagtgcaacataaggaaaggttaaacaatacaacagattgaatgaaaattaaac--------catgcaaataattgttcacaagt |
25565266 |
T |
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| Q |
101 |
tcatccatgtggcgaagacgatcacaaataaaatcaaaaacatacaac-----aatacagtacaatttctttatagcttagctaaagctatctctaacaa |
195 |
Q |
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| T |
25565265 |
tcatccatgtcgtgaagacgatcacaaataagataaaaaacatacaacaatagaatacaatagaatttctttatagcttagctaaagctatccctaacaa |
25565166 |
T |
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| Q |
196 |
catctgatcgatgnnnnnnnataaattggatccaagacctgtttattgcgctccttctcattctcattgatatctctaattcgtgttgttcttcttaact |
295 |
Q |
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| T |
25565165 |
catctgatcgatgcttttttataaattggatccaagacctgtttattgcgctcc------ttctcattgatatctctaattcgtgtagttcttcttaact |
25565072 |
T |
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| Q |
296 |
tcttagaaaaccaaaagaaacatttacttgatctttcgtccttcgatccaatcgcgctattcttgggtccctttgcttct |
375 |
Q |
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| T |
25565071 |
tcttagaaaaccaaaagaaacatttacttgatctttcgtccttcgatccaatcgcgctattcttgggtccctttgcttct |
25564992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 375
Target Start/End: Complemental strand, 25589361 - 25589243
Alignment:
| Q |
257 |
tctcattgatatctctaattcgtgttgttcttcttaacttcttagaaaaccaaaagaaacatttacttgatctttcgtccttcgatccaatcgcgctatt |
356 |
Q |
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| T |
25589361 |
tctcattgatgtctctaattcgtgtaattcttcctagcttcttagaaaaccaaaacaaacatccacttgatctttgggtctttgcttcaatcatgctatt |
25589262 |
T |
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| Q |
357 |
cttgggtccctttgcttct |
375 |
Q |
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| T |
25589261 |
cttgggtccctttgcttct |
25589243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 25589613 - 25589525
Alignment:
| Q |
63 |
attaaacaaacaaaccatgcaaataattgttcacaagttcatccatgtggcgaagacgatcacaaataaaatcaaaaacatacaacaata |
152 |
Q |
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| T |
25589613 |
attaaacaaacaaatcatgcaaataattgttcacgatttcgcccatgtggtgaagacgaacacaaataacatc-aaaacatacaacaata |
25589525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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