View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_low_21 (Length: 342)
Name: NF3564_low_21
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 87 - 325
Target Start/End: Complemental strand, 7920599 - 7920360
Alignment:
| Q |
87 |
aaagaatattagtctctatttagtccnnnnnnn-tatcagtcttataacatttgctcccctttttataagtggttcttctgaaaaattcaaagaatttga |
185 |
Q |
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| T |
7920599 |
aaagaatattagtctctatttagtccaaaaaaaatatcagtcttataacattttctcccctttttataagtggttcttctgaaaatttcaaagaatttga |
7920500 |
T |
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| Q |
186 |
cacatctaattgcaacaatatcttccactcaaactacatgtaacttagactatggtagttccaaaattcaaaataaggaatttacaaattgtactttgaa |
285 |
Q |
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| T |
7920499 |
cacatctaattgcaacaatatcttccactcaaactacatgtaacttagactatggtagttccaaaattcaaaataaggaatttacaaattgtactttgaa |
7920400 |
T |
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| Q |
286 |
ttcttcaatgtaaacccatagtaatgttcgaaattatatc |
325 |
Q |
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| T |
7920399 |
ttcttcaatgtaaacccatagtaatgttcgaaattatatc |
7920360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 7920703 - 7920616
Alignment:
| Q |
16 |
atcaagagaacaacaaaggtttaactgtatattatttaaaattgttaaaagttatattctatttaattaataaagaatattagtctct |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7920703 |
atcaagagaacaacaaaggtttaactgtatattatttaaaattgttaaaagttatattctatttaattaataaagaatattagtctct |
7920616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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