View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3564_low_22 (Length: 342)

Name: NF3564_low_22
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3564_low_22
NF3564_low_22
[»] scaffold0059 (1 HSPs)
scaffold0059 (2-324)||(34753-35075)
[»] chr4 (1 HSPs)
chr4 (1-281)||(11885020-11885300)
[»] chr6 (2 HSPs)
chr6 (1-142)||(20246762-20246903)
chr6 (1-142)||(22140746-22140887)
[»] chr1 (2 HSPs)
chr1 (1-285)||(18218039-18218320)
chr1 (1-282)||(4598995-4599273)
[»] chr2 (2 HSPs)
chr2 (1-307)||(24987915-24988218)
chr2 (1-241)||(25566944-25567180)
[»] chr5 (1 HSPs)
chr5 (147-312)||(22803746-22803911)
[»] chr7 (2 HSPs)
chr7 (8-204)||(2284101-2284294)
chr7 (150-285)||(22034055-22034190)


Alignment Details
Target: scaffold0059 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 2 - 324
Target Start/End: Original strand, 34753 - 35075
Alignment:
Q  2 tttggcttggatgaacaaagttttaagatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttaca 101  Q
    |||| |||||||| |||||  |||||||||||||||||||||| ||| | | |||||||||||||||||  | | || |  | |||||| ||||||||||    
T  34753 tttgccttggatggacaaacgtttaagatgattcttcatcgaaccattaggcttttcgaatatggatttccgttaatctacaaagccattatttgttaca 34852  T
Q  102 aaatagcacatgggtttgtattcctccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatgg 201  Q
    || ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||    
T  34853 aagtagcacatggggttgtattcctccatgtccttgggatcgaactcttcctctgaatcctcaacttcagacaccatatcatattcagctggcaaaatgg 34952  T
Q  202 aaatcaagttgaatatgacgtcaaagtccggttctgaatccataaaatctgaacccaaatcatcatcttcatcaggatcctctttgactaggggaagaga 301  Q
    ||| ||  ||| |||||||||| |||||| |||||||||||||||| |||||| |||| ||||||||||| |||||||  | ||||| ||||||||||||    
T  34953 aaaccacattgcatatgacgtcgaagtccagttctgaatccataaactctgaatccaattcatcatcttcgtcaggattatttttgaataggggaagaga 35052  T
Q  302 ctacctttatttcgctgatcttc 324  Q
    |||||| | |||||||| |||||    
T  35053 ctacctctctttcgctggtcttc 35075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 11885300 - 11885020
Alignment:
Q  1 ctttggcttggatgaacaaagttttaagatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttac 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||| |||   || || || || ||||| |||||||||    
T  11885300 ctttggcttggatgaacaaaggtttaagatgattcttcatcgaatcatcaggattttcgaatatggctttccaataatcttcagggccattatttgttac 11885201  T
Q  101 aaaatagcacatgggtttgtattcctccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatg 200  Q
    ||| || || |||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||    
T  11885200 aaagtaccatatgggtttgtattcctccatatccttgggatcgaactcttcctctgaatcctcaacttcagacaccatatcatattcagctggcaaaatg 11885101  T
Q  201 gaaatcaagttgaatatgacgtcaaagtccggttctgaatccataaaatctgaacccaaatcatcatcttcatcaggatcc 281  Q
    ||||  |  ||| |||||||||| |||||||||| ||||||||| || |||||| |||| |||||||||||||||||||||    
T  11885100 gaaacaacattgcatatgacgtcgaagtccggttttgaatccatgaactctgaatccaattcatcatcttcatcaggatcc 11885020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 20246762 - 20246903
Alignment:
Q  1 ctttggcttggatgaacaaagttttaagatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20246762 ctttggcttggatgaacaaagttttaagatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttac 20246861  T
Q  101 aaaatagcacatgggtttgtattcctccatgtccttgggatt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20246862 aaaatagcacatgggtttgtattcctccatgtccttgggatt 20246903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 22140746 - 22140887
Alignment:
Q  1 ctttggcttggatgaacaaagttttaagatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22140746 ctttggcttggatgaacaaagttttaagatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttac 22140845  T
Q  101 aaaatagcacatgggtttgtattcctccatgtccttgggatt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22140846 aaaatagcacatgggtttgtattcctccatgtccttgggatt 22140887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 18218320 - 18218039
Alignment:
Q  1 ctttggcttggatgaacaaagttttaagatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttac 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||| |||  ||| || || |||||||| |||    ||    
T  18218320 ctttggcttggatgaacaaagttttgagatgattcttcatcgaatcatcaagctgttcaaatatggctttccgattatcttcagagccattattc---ac 18218224  T
Q  101 aaaatagcacatgggtttgtattcctccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatg 200  Q
    |||||||||||||| ||| |||||||||||||| ||||||| |||||||||||||||||| || ||||| || | ||||||| | ||||| || ||||||    
T  18218223 aaaatagcacatggctttatattcctccatgtctttgggatcgaactcttcctctgaatcatcaacttcggatatcatatcaaattcagcgggtaaaatg 18218124  T
Q  201 gaaatcaagttgaatatgacgtcaaagtccggttctgaatccataaaatctgaacccaaatcatcatcttcatcaggatcctctt 285  Q
    |||| ||| ||| ||||||| |  ||||| |||||||||||   | |  |||| || || ||||||||||||| |||||||||||    
T  18218123 gaaaccaaattgcatatgacattgaagtctggttctgaatctgaatatcctgatcctaactcatcatcttcattaggatcctctt 18218039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 4598995 - 4599273
Alignment:
Q  1 ctttggcttggatgaacaaagttttaagatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttac 100  Q
    ||||||||||||||||||||| ||| ||||||||| |||||||||||||| | | ||| ||||||| |||  ||| || || | |||||| |||    ||    
T  4598995 ctttggcttggatgaacaaaggtttgagatgattcctcatcgaatcatcacgctgttcaaatatggctttccgattatcttcatagccattattc---ac 4599091  T
Q  101 aaaatagcacatgggtttgtattcctccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatg 200  Q
    |||||||||||||||| |||||||||||||  ||||||||| |||||||||||||||||| || |||||||| | ||| ||||| || ||||| |||| |    
T  4599092 aaaatagcacatgggtctgtattcctccattcccttgggatcgaactcttcctctgaatcatcaacttcagatatcatgtcatattcggctggtaaaacg 4599191  T
Q  201 gaaatcaagttgaatatgacgtcaaagtccggttctgaatccataaaatctgaacccaaatcatcatcttcatcaggatcct 282  Q
     ||| ||| ||| ||||||| || ||||| | || ||| ||  ||||  |||| || || ||||||||||||| ||||||||    
T  4599192 aaaaccaaattgcatatgacatcgaagtctgattttgactctgtaaatcctgatcctaactcatcatcttcattaggatcct 4599273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 24988218 - 24987915
Alignment:
Q  1 ctttggcttggatgaacaaagttttaagatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttac 100  Q
    |||||||||| |||||||||| ||||| |||| ||||||| ||||||||| | | ||| ||||||| ||| |||| || || |||  |||||||   ||     
T  24988218 ctttggcttgaatgaacaaaggtttaatatgactcttcattgaatcatcaggctgttcaaatatggctttctgattatcttcagatacatcattcaata- 24988120  T
Q  101 aaaatagcacatgggtttgtattcctccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatg 200  Q
      | |||||||||||||||||||| |||||||||||||||| ||||| || ||||||||| ||||||||||| | ||||||||| |||||||| ||||||    
T  24988119 --agtagcacatgggtttgtattcttccatgtccttgggatcgaacttttactctgaatcatcgacttcagatatcatatcatattcagctggtaaaatg 24988022  T
Q  201 gaaatcaagttgaatatgacgtcaaagtccggttctgaatccataaaatctgaacccaaatcatcatcttcatcaggatcctctttgactaggggaagag 300  Q
    |||| ||| ||| ||||||| || ||||| |||||||||||  ||||   ||| || || ||||||||||||| ||||||||| | |||||  |||||||    
T  24988021 gaaaccaaattgcatatgacatcgaagtctggttctgaatctgtaaatcttgatcctaactcatcatcttcattaggatcctcctcgactaaaggaagag 24987922  T
Q  301 actacct 307  Q
    || ||||    
T  24987921 acaacct 24987915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 25567180 - 25566944
Alignment:
Q  1 ctttggcttggatgaacaaagttttaagatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttac 100  Q
    |||||| |||||||||||||| ||| |||||| |||||||||||||||| || | ||| ||||||| |||  ||| || || |||||||||||   | ||    
T  25567180 ctttggattggatgaacaaaggtttgagatgactcttcatcgaatcatctagctgttcaaatatggctttacgattatcttcagagccatcat---tcac 25567084  T
Q  101 aaaatagcacatgggtttgtattcctccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatg 200  Q
    ||||||||||||||||| ||| ||  ||||| |||| |  | ||||||||| | || | | || || ||||| | ||||||||| || ||||| || |||    
T  25567083 aaaatagcacatgggttggtactctcccatg-cctttgcttcgaactcttcatttgcaacatcaacctcagatatcatatcatattcggctggtaagatg 25566985  T
Q  201 gaaatcaagttgaatatgacgtcaaagtccggttctgaatc 241  Q
    |||| ||| ||  ||||||| || ||||| |||||||||||    
T  25566984 gaaaccaaattacatatgacatctaagtctggttctgaatc 25566944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 147 - 312
Target Start/End: Original strand, 22803746 - 22803911
Alignment:
Q  147 tcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatggaaatcaagttgaatatgacgtcaaagtccggttctgaatccataa 246  Q
    |||||||||||||| ||||||||||| ||||||||||| | |||||| ||||| || | ||  ||| |||||| ||| ||||| ||||||||||||||||    
T  22803746 tcttcctctgaatcatcgacttcagataccatatcatattaagctggcaaaattgagaccacattgcatatgaagtcgaagtctggttctgaatccataa 22803845  T
Q  247 aatctgaacccaaatcatcatcttcatcaggatcctctttgactaggggaagagactacctttatt 312  Q
    | | ||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  22803846 actttgaacccaattcatcatcttcatcagaatcctctttgactaggggaagagacaacctttatt 22803911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 2284101 - 2284294
Alignment:
Q  8 ttggatgaacaaagttttaagatgattcttcatcgaatcatcaagtttttcgaatatggatttttgatcatttttagagccatcatttgttacaaaatag 107  Q
    ||||||||||||||  || || ||| |||||||| || ||||| ||| ||| |||||||||||  ||| || || |||||||| |||    |||||||||    
T  2284101 ttggatgaacaaaggcttgaggtgactcttcatcaaagcatcaggttgttcaaatatggatttccgattatcttcagagccattattc---acaaaatag 2284197  T
Q  108 cacatgggtttgtattcctccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatggaaa 204  Q
    |||||||||||||| |||    |||  ||||||| ||||||||||||| |||| || ||||| || | ||||||||| | |||||| ||||||||||    
T  2284198 cacatgggtttgtactcccttgtgtatttgggatcgaactcttcctctaaatcatcaacttccgatatcatatcatacttagctggtaaaatggaaa 2284294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 285
Target Start/End: Complemental strand, 22034190 - 22034055
Alignment:
Q  150 tcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatggaaatcaagttgaatatgacgtcaaagtccggttctgaatccataaaat 249  Q
    |||||||| ||||| | ||||||||||| || ||| || ||  |||||||||||||||  ||| | |||||||| ||||  |||||||||||| | ||||    
T  22034190 tcctctgattcctccatttcagacaccacattatattctgcatgaaaaatggaaatcacattgcaaatgacgtcgaagttaggttctgaatccttgaaat 22034091  T
Q  250 ctgaacccaaatcatcatcttcatcaggatcctctt 285  Q
    || || | |  ||||||||| || |||||| |||||    
T  22034090 ctaaatctatttcatcatctccaacaggattctctt 22034055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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