View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_low_25 (Length: 308)
Name: NF3564_low_25
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_low_25 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 15262686 - 15262976
Alignment:
| Q |
18 |
agaggaaagttgctaaaaggaatggaattggagtaattgtaaaaactttttcaccttctcattttgatggtgattgggataaggctggaacatgttcaaa |
117 |
Q |
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| T |
15262686 |
agaggaaagttgctaaaaggaatggaattggagtaattgtgaaaactttttcaccttctcattttgatggtgattgggataaggctggaacatgttcaaa |
15262785 |
T |
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| Q |
118 |
gattgaaccttatgtaaagggtgagaagaaaattggaaaaatggaaagtgagattagaaggattgagattgaagaagtggaaaatgctaagaaaaaatca |
217 |
Q |
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| T |
15262786 |
gattgaaccttatgtaaagggtgagaagaaaattggaaaaatggaaagtgagattagaaggattgagattgaagaagtggaaaatgctaagaaaaaatca |
15262885 |
T |
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| Q |
218 |
aatgcatttggagggattagatttgaggtattggatgcaactgaattggcattgttgagaccagatggtcatccaggtgcttacatgaatc |
308 |
Q |
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| T |
15262886 |
aatgcatttggagggattagatttgaggtattggatgtaactgaattggcattgttgagaccagatggtcatccaggtgcttacatgaatc |
15262976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 15287740 - 15287450
Alignment:
| Q |
18 |
agaggaaagttgctaaaaggaatggaattggagtaattgtaaaaactttttcaccttctcattttgatggtgattgggataaggctggaacatgttcaaa |
117 |
Q |
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| T |
15287740 |
agaggaaagttgctaaaggaaatagaatagatgtgattgttaaaacattttcacctgctcattttgaaggtgattgggataaggctggtacttgttcaaa |
15287641 |
T |
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| Q |
118 |
gattgaaccttatgtaaagggtgagaagaaaattggaaaaatggaaagtgagattagaaggattgagattgaagaagtggaaaatgctaagaaaaaatca |
217 |
Q |
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| T |
15287640 |
gactaagccttatagaaaagaggagaagatagttggaggaatggatggtgagattagaaggattgagatagaagaagtggaaagtgccaagacaaaagct |
15287541 |
T |
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| Q |
218 |
aatgcatttggagggattagatttgaggtattggatgcaactgaattggcattgttgagaccagatggtcatccaggtgcttacatgaatc |
308 |
Q |
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| T |
15287540 |
aataaatttgaaggtattagaattgaggtgttggatgtaactaaattggcattattgagaccagatggtcatccaggtccttacatgaatc |
15287450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 308
Target Start/End: Complemental strand, 15265536 - 15265304
Alignment:
| Q |
76 |
tcattttgatggtgattgggataaggctggaacatgttcaaagattgaaccttatgtaaagggtgagaagaaaattggaaaaatggaaagtgagattaga |
175 |
Q |
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| T |
15265536 |
tcattttgaaggtgcttgggataaggctggtgcttgtccaaaaactaagccttatagaaatggagagaagaaagttgaaggaatggatggtgagatgaga |
15265437 |
T |
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| Q |
176 |
aggattgagattgaagaagtggaaaatgctaagaaaaaatcaaatgcatttggagggattagatttgaggtattggatgcaactgaattggcattgttga |
275 |
Q |
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| T |
15265436 |
aagattgagatagaagaagtggtggctgctaaagccaaaggcaatgaatttggaaggttaagatttgaagtattggatgtaacaaaattggctttgttaa |
15265337 |
T |
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| Q |
276 |
gaccagatggtcatccaggtgcttacatgaatc |
308 |
Q |
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| T |
15265336 |
gaccagatggtcatccaggtccttatatgaatc |
15265304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 300
Target Start/End: Complemental strand, 15256930 - 15256787
Alignment:
| Q |
157 |
aatggaaagtgagattagaaggattgagattgaagaagtggaaaatgctaagaaaaaatcaaatgcatttggagggattagatttgaggtattggatgca |
256 |
Q |
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|||||| |||||||| || | |||||| |||||||||| ||| |||||||| ||| | || |||||||||| |||| ||||||| | | |||| | |
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| T |
15256930 |
aatggatagtgagatgaggaaaattgaggttgaagaagttgaagatgctaaggtgaaaggtagtgaatttggaggggttaggtttgaggcacttgatgta |
15256831 |
T |
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| Q |
257 |
actgaattggcattgttgagaccagatggtcatccaggtgctta |
300 |
Q |
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| T |
15256830 |
actaaattggcattgttgagaccagatggtcatccaggtcctta |
15256787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 15284418 - 15284465
Alignment:
| Q |
261 |
aattggcattgttgagaccagatggtcatccaggtgcttacatgaatc |
308 |
Q |
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| T |
15284418 |
aattggcattgttgagaccagatggtcatgctggtgcttatatgaatc |
15284465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 51383365 - 51383553
Alignment:
| Q |
20 |
aggaaagttgctaaaaggaatggaattggagtaattgtaaaaactttttcaccttctcattttgatggtgattgggataaggctggaacatgttcaaaga |
119 |
Q |
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|||||||||| |||| ||||||||| | || ||||| | ||| |||||||| ||||||||||| |||| ||||||||||| ||||| |||||||||| |
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| T |
51383365 |
aggaaagttgttaaagggaatggaaattatgtgattgtgagaacattttcaccatctcattttgaaggtggttgggataagggaggaacttgttcaaaga |
51383464 |
T |
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| Q |
120 |
ttgaaccttatgtaaagggtgagaagaaaattggaaaaatggaaagtgagattagaaggattgagattgaagaagtggaaaatgctaag |
208 |
Q |
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| T |
51383465 |
gtgagccatatgaaaatggggagaagaaacttgaagaaatggatgctgagataagaagtattgagatagaggaagtgaaaaatgctaag |
51383553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 51383603 - 51383650
Alignment:
| Q |
261 |
aattggcattgttgagaccagatggtcatccaggtgcttacatgaatc |
308 |
Q |
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| T |
51383603 |
aattggcattgttgagaccagatggtcatgcaggagcctacatgaatc |
51383650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 44248364 - 44248281
Alignment:
| Q |
36 |
ggaatggaattggagtaattgtaaaaactttttcaccttctcattttgatggtgattgggataaggctggaacatgttcaaaga |
119 |
Q |
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| T |
44248364 |
ggaatggaattgatgtaattgtgagaacatactcacctactcattttgaaggtgattgggataagggtggtacatgttcaaaga |
44248281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 44248140 - 44248095
Alignment:
| Q |
263 |
ttggcattgttgagaccagatggtcatccaggtgcttacatgaatc |
308 |
Q |
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| T |
44248140 |
ttggcattattgagaccagatggtcatgcaggagcttatatgaatc |
44248095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 11807060 - 11807021
Alignment:
| Q |
261 |
aattggcattgttgagaccagatggtcatccaggtgctta |
300 |
Q |
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| T |
11807060 |
aattggcattgttgagaccagatggtcatgcaggagctta |
11807021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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