View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_low_28 (Length: 289)
Name: NF3564_low_28
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_low_28 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 30406914 - 30407186
Alignment:
| Q |
17 |
atttttaatctaccattttaataaaaatatatgtttacaagaggcaccattattttaattcgtcatattgacgcaaaccggtaaaaataggtaccatctt |
116 |
Q |
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| T |
30406914 |
atttttaatctaccattttaataaaaatatatgtttacaagaggcaccgttattttaattcgtcatattgacgcaaaccggtaaaaataggtaccatctt |
30407013 |
T |
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| Q |
117 |
tcattttgtccgataatatagatacttttcaagtaacaaaatcacctaccaataactagttacaagttatttgaaatagcaacaatgacatgacaaacaa |
216 |
Q |
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| T |
30407014 |
tcattttgtccgataatatagatacttttcaagtaacaaaatcacctaccaataactagttacaagttatttgaaatagcaacaatgacatgacaaacaa |
30407113 |
T |
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| Q |
217 |
gattaacctaccaaaatattggtatggaaattgtataaagacactagtgtgtttcaatgagtatctagaaaat |
289 |
Q |
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| T |
30407114 |
gattaacctaccaaaatattggtatggaaattgtataaagacactagtgtgtttcaatgagtatctagaaaat |
30407186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 30393529 - 30393592
Alignment:
| Q |
228 |
caaaatattggtatggaaattgtataaagacact--agtgtgtttcaatgagtatctagaaaat |
289 |
Q |
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| T |
30393529 |
caaaatgttggtatggaatttatataaagacactagagtttgtttcaatgagtatctagaaaat |
30393592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 30393352 - 30393411
Alignment:
| Q |
124 |
gtccgataatatagatacttttcaagtaacaaaatcacctaccaataactagttacaagt |
183 |
Q |
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| T |
30393352 |
gtccaataatatagattttattaaagtaacagaatcacctaccaataactagttacaagt |
30393411 |
T |
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