View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_low_30 (Length: 277)
Name: NF3564_low_30
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 40381533 - 40381274
Alignment:
| Q |
1 |
ttttacttgctccctctgcatttaaggaaagatgaacctatattacttggtcatttcaattattctttagattccatcatccatgtaatttcaaaactat |
100 |
Q |
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| T |
40381533 |
ttttacttgctccctctgcattcaaggaaagatgaacctatattacttggtcatttcaattattctttaggttccatcatccatgtaatttcaaaactat |
40381434 |
T |
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| Q |
101 |
atttcttgttcttaattttcaattacttgcaaattagagagccacttcagtttcaactacatgtttccaagccttcttcatgaacaactagaggtatatc |
200 |
Q |
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| T |
40381433 |
atttcttgttcttaattttcaattacttgcaaattagagagccacttcagtttcaactacatgtttccaagccttcttcatgaacaactagaggtatatc |
40381334 |
T |
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| Q |
201 |
cttcaatttcttatatgcatcactttgcgactgcataatttatagtgcatactcgataac |
260 |
Q |
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| T |
40381333 |
cttcaatttcttatatgcatcactttgcgactgcataatttatagcacatactcgataac |
40381274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 40382634 - 40382577
Alignment:
| Q |
175 |
tcttcatgaacaactagaggtatatccttcaatttcttatatgcatcactttgcgact |
232 |
Q |
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| T |
40382634 |
tcttcatgatcaacttgaggtatatccttcaatttcatttatacatgactttgtgact |
40382577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 95 - 246
Target Start/End: Complemental strand, 22810034 - 22809882
Alignment:
| Q |
95 |
aactatatttcttgttcttaattttcaattacttgcaaattagagagccacttcagtttcaactacatgtttccaagccttcttcatgaacaactagagg |
194 |
Q |
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| T |
22810034 |
aactatacttcttgttcttacttatcaattacttgcaaattagagagccacttcagcttcaactacatgtttccaag-cttcttcatgaacagctagagg |
22809936 |
T |
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| Q |
195 |
tatatccttcaatttcttatatgcatcactttgcgac--tgcataatttatagt |
246 |
Q |
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| T |
22809935 |
tacattcttgaattttttatatacatcactttgcgactatgcatagtttatagt |
22809882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 210
Target Start/End: Complemental strand, 22813202 - 22813088
Alignment:
| Q |
94 |
aaactatatttcttgttcttaattttcaattacttgcaaattagagagccacttcagtttcaactacatgtttccaagccttcttcatgaacaactagag |
193 |
Q |
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| T |
22813202 |
aaactatatttctt-ttcgtaatttgcagtggtttgcaaattagagaggcacttcagctgcagctagacgtt-cagaggcgtcttcatgaacaactagag |
22813105 |
T |
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| Q |
194 |
gtatatccttcaatttc |
210 |
Q |
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| T |
22813104 |
gtatatcctttaatttc |
22813088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 22793913 - 22793867
Alignment:
| Q |
6 |
cttgctccctctgcatttaaggaaagatgaacctatattacttggtc |
52 |
Q |
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| T |
22793913 |
cttgctccctctacatttaaggatagatgaatccatattacttggtc |
22793867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 36940908 - 36940880
Alignment:
| Q |
175 |
tcttcatgaacaactagaggtatatcctt |
203 |
Q |
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| T |
36940908 |
tcttcatgaacaactagaggtatatcctt |
36940880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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