View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_low_35 (Length: 252)
Name: NF3564_low_35
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 40381688 - 40381929
Alignment:
| Q |
1 |
tttaattcccattaaaaaattgtatctatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaatggtaacctcaatatctttag |
100 |
Q |
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| T |
40381688 |
tttaattcccattaaaaaattgtatctatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaatggtaacctcaatatctttag |
40381787 |
T |
|
| Q |
101 |
gacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgttggtcaaacatcatttgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
40381788 |
gacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgttggtcaaacatcatcttcaa |
40381887 |
T |
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| Q |
201 |
cttccttccttgttcctctattcgcaactgtaattttctctg |
242 |
Q |
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| T |
40381888 |
cttccttccttattcctctattcgcaactgtaattttctctg |
40381929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 22812257 - 22812490
Alignment:
| Q |
1 |
tttaattcccattaaaaaattgtatctatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaatggtaacctcaatatctttag |
100 |
Q |
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|||||||||||||| |||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22812257 |
tttaattcccattacaaaattgtat----ggtttggttttctgtcagttatgagtattgagaatgagacccttcaaaaatggtaacctcaatatctttag |
22812352 |
T |
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| Q |
101 |
gacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgttggtcaaacatcatttgcaa |
200 |
Q |
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|||| |||||| |||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||| | ||| |
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| T |
22812353 |
gactaattggtgtatcattgtttggtgtattgtccaaattttgagtgttcaattggcaagtactatttgtcttctgttgttggtcaaacatcatcttcaa |
22812452 |
T |
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| Q |
201 |
cttccttccttgttcctctattcgcaactgtaattttc |
238 |
Q |
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| T |
22812453 |
ctgctttccttgttcctctattcgcaactgtaattttc |
22812490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 191
Target Start/End: Original strand, 22809496 - 22809618
Alignment:
| Q |
69 |
cccttcaaaaatggtaacctcaatatctttaggacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactactt |
168 |
Q |
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|||||||||||| | || |||| |||||||||| || ||||| |||||||||||| |||| |||||||||| ||||||||| |||||||| ||||||| |
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| T |
22809496 |
cccttcaaaaattgaaatctcagtatctttaggcctgtttggtttatcattgtttgatgtaatgtccaaattccgagtgttcatttggccactactactt |
22809595 |
T |
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| Q |
169 |
gtcttctgatgttggtcaaacat |
191 |
Q |
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||||||| |||||||||||||| |
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| T |
22809596 |
ctcttctgctgttggtcaaacat |
22809618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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