View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3564_low_38 (Length: 249)
Name: NF3564_low_38
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_low_38 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 30518191 - 30517943
Alignment:
| Q |
1 |
actagagaatacaaatgtgactgtggaactatcttttcaaggtaaactaactgcctatccatccatctctatgttattctgctcacatcgttgtaatcgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30518191 |
actagagaatacaaatgtgactgtggaactatcttttcaaggtaat-taactgcctatccatccatctctatgttattctgatcacatcgttgtaatcgg |
30518093 |
T |
|
| Q |
101 |
tatatatgatataaggatctcagtgactcgaggaattagtctcaacagatg-ttgcggagatatcttagtttaccaaaaaattatatatctgatataagg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30518092 |
tatatatgatataaggatctcagtgactcgaggaattagtctcagcagatgtttgcggagatatcttagtttaccaaaaaattatatatctgatataagg |
30517993 |
T |
|
| Q |
200 |
atcaagtttataggtggttaggtaacttgaataatatgttgtttttgcct |
249 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30517992 |
atcgagtttaaaggtggttaggtaacttgaataatatgttgtttttgcct |
30517943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38895900 - 38895856
Alignment:
| Q |
1 |
actagagaatacaaatgtgactgtggaactatcttttcaaggtaa |
45 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
38895900 |
actagagaatacaaatgtgattgtggcactatcttttcaaggtaa |
38895856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 36989429 - 36989466
Alignment:
| Q |
7 |
gaatacaaatgtgactgtggaactatcttttcaaggta |
44 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
36989429 |
gaatacaaatgtgactgtggaaccatcttttccaggta |
36989466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University