View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_low_39 (Length: 242)
Name: NF3564_low_39
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 7445429 - 7445215
Alignment:
| Q |
9 |
gagcagagagaagaaggctctagtagaactagtgctgatcaaaatgggctgacattggagccaacaaggcccacagggaggtcaaagttaatgaattatg |
108 |
Q |
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| T |
7445429 |
gagcatagagaagaaggctctagtagaactagtgctggtcaaaatgggctgacattggagccaacaagacccacaaggtggtcaaagttaatgaattatg |
7445330 |
T |
|
| Q |
109 |
tccaagaacaacaagcaattcctgctctaaaatctgaagttcaagagtatttgaatgagccaacttacaagcctaacgataatggtcgtatgtccttttg |
208 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
7445329 |
tccaagaacaacaagcaattcctgctgtaaaatctgaagttcaagagtatttgaatgagccaacttacaagcctaacaataatggtcatatgtccttttg |
7445230 |
T |
|
| Q |
209 |
tgccttggaatggtg |
223 |
Q |
| |
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||| ||||||||||| |
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| T |
7445229 |
tgctttggaatggtg |
7445215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 8112744 - 8112543
Alignment:
| Q |
20 |
agaaggctctagtagaactagtgctgatcaaaatgggctgacattggagccaacaaggcccacagggaggtcaaagttaatgaattatgtccaagaacaa |
119 |
Q |
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|||||||||||||||||||| ||||||| |||| ||| |||||||| |||||||||| | ||||| ||||| | | ||||||||||| |||||||| |
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| T |
8112744 |
agaaggctctagtagaactactgctgattaaaacgggttgacattgaagccaacaagagactcagggtggtcacaacaagtgaattatgtcaaagaacaa |
8112645 |
T |
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| Q |
120 |
caagcaattcctgctctaaaatctgaagttcaagagtatttgaatgagccaacttacaagcctaacgataatggtcgtatgtccttttgtgccttggaat |
219 |
Q |
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|||||||||| |||| |||||||||||||| |||||||| |||| ||||||||||||||| |||| |||||||||| ||||||||||||||| ||||||| |
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| T |
8112644 |
caagcaattcatgctgtaaaatctgaagttgaagagtatctgaaggagccaacttacaagtctaatgataatggtcatatgtccttttgtgcattggaat |
8112545 |
T |
|
| Q |
220 |
gg |
221 |
Q |
| |
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|| |
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| T |
8112544 |
gg |
8112543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 49376908 - 49377124
Alignment:
| Q |
7 |
aggagcagagagaagaaggctctagtagaactagtgctgatcaaaatgggctgacattggagccaacaaggcccacagggaggtcaaagttaatgaatta |
106 |
Q |
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||||||| | ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
49376908 |
aggagcataaagaagaaggctctggtagaactagtgctgatcaaaatgggttgacattggagccaacaagacccacagggtggtcaaagttaatgaatta |
49377007 |
T |
|
| Q |
107 |
tgtccaagaacaacaagcaattcctgctctaaaatctgaagttcaagagtatttgaatgagccaacttacaagcctaacgataatggtcgtatgtccttt |
206 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
49377008 |
tgtccaagaacaacaagcaattcctgctgtaaaatctgaagttcaagagtatttgaatgagccaacttacaagcctaacaataatggtaatatgtccttt |
49377107 |
T |
|
| Q |
207 |
tgtgccttggaatggtg |
223 |
Q |
| |
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||||||||||||||||| |
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| T |
49377108 |
tgtgccttggaatggtg |
49377124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 7 - 208
Target Start/End: Original strand, 3804118 - 3804319
Alignment:
| Q |
7 |
aggagcagagagaagaaggctctagtagaactagtgctgatcaaaatgggctgacattggagccaacaaggcccacagggaggtcaaagttaatgaatta |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||| ||||||||||||||||||| |
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| T |
3804118 |
aggagcatagagaagaaggctctagtagaactagtgctgatcaaaatgggttgacattagagccaacaagacccacggggtggtcaaagttaatgaatta |
3804217 |
T |
|
| Q |
107 |
tgtccaagaacaacaagcaattcctgctctaaaatctgaagttcaagagtatttgaatgagccaacttacaagcctaacgataatggtcgtatgtccttt |
206 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3804218 |
tgtccaagaacaacaagcaattcctgctgtaaaatctgaagttcaagagtatttgaatgagccaacttacaagcctaacgataatggtcatatgtccttt |
3804317 |
T |
|
| Q |
207 |
tg |
208 |
Q |
| |
|
|| |
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|
| T |
3804318 |
tg |
3804319 |
T |
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