View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_low_4 (Length: 527)
Name: NF3564_low_4
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 9 - 507
Target Start/End: Complemental strand, 30517964 - 30517475
Alignment:
| Q |
9 |
gaataatatgttgtttttgcctatttggcttttatgagaataaaaagtgaatgaggttaattagttcaaacaaattattaaggagttgatcaaagattaa |
108 |
Q |
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| T |
30517964 |
gaataatatgttgtttttgcctatttggcttttatgagaataaaaagtgaatgaggttaattagttcaaacaaattatgaaggagttgatcaaagattaa |
30517865 |
T |
|
| Q |
109 |
ttaagacacaagtttttcgataagcctttttgcagtttttgccctaaacgacaaaatccatggtttggagttatctcagttaacctcactcactaaagat |
208 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30517864 |
ttaacacacaagttttt-gataagcctttttgcagtttttgccctaaacgacaaaatccatggtttggagttatctcagttaacctcactcactatagat |
30517766 |
T |
|
| Q |
209 |
atatatttgagtattatttttgttttattttgacactagtttgaggttgttaaccaaccactatatataggcttgtttgtacaaatccttatgccgtact |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30517765 |
atatatttgagtattatttttgttttattttgacactagtttgaggttgttaaccaaccactatatataggcttgtttgtacaaatccttatgccgtact |
30517666 |
T |
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| Q |
309 |
catgttactgcttactcccattttgacttttcttagctctaatcttttttcatagacttctcattctcacaaagggttgagtt--gagataagtaaagtc |
406 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || | ||||||||||||||| |
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| T |
30517665 |
catgttactgcttactcccattttgacttttgttagctctaatcttttgtcatagacttctcattctcacaaagggttcagctgagagataagtaaagtc |
30517566 |
T |
|
| Q |
407 |
tgataaaatatcgttcctctgcatttgaactcttggtatcccaaacaatccgtccttaaccgaaactcattaagcaaattttttctttgtttcttctcat |
506 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30517565 |
----------tcgttcctttgcatttgaactcttggtaacccaaacaatccgtccttaaccgaaactcattaagcaaattttttctttgtttcttctcat |
30517476 |
T |
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