View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3564_low_40 (Length: 242)

Name: NF3564_low_40
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3564_low_40
NF3564_low_40
[»] chr7 (27 HSPs)
chr7 (1-232)||(4958478-4958709)
chr7 (121-188)||(16904453-16904520)
chr7 (121-169)||(21759972-21760020)
chr7 (121-173)||(28103822-28103874)
chr7 (121-173)||(5524469-5524521)
chr7 (121-173)||(8592428-8592480)
chr7 (121-173)||(26974118-26974170)
chr7 (121-169)||(38391841-38391889)
chr7 (120-169)||(759078-759127)
chr7 (121-169)||(83478-83526)
chr7 (121-173)||(2850869-2850921)
chr7 (121-169)||(3178192-3178240)
chr7 (142-174)||(34100556-34100588)
chr7 (121-173)||(34947589-34947641)
chr7 (121-173)||(44180294-44180346)
chr7 (121-169)||(46211524-46211572)
chr7 (121-172)||(2459559-2459610)
chr7 (118-173)||(7457406-7457461)
chr7 (120-174)||(12631393-12631447)
chr7 (121-173)||(7463302-7463354)
chr7 (121-169)||(9786081-9786129)
chr7 (121-169)||(19060389-19060437)
chr7 (129-173)||(19271729-19271773)
chr7 (121-173)||(24516277-24516329)
chr7 (121-173)||(30866056-30866108)
chr7 (125-169)||(48608955-48608999)
chr7 (121-169)||(49101759-49101807)
[»] chr4 (38 HSPs)
chr4 (120-173)||(462040-462093)
chr4 (121-173)||(32884883-32884935)
chr4 (121-173)||(49175921-49175973)
chr4 (120-173)||(17237282-17237335)
chr4 (108-169)||(32469922-32469983)
chr4 (121-174)||(52869153-52869206)
chr4 (121-173)||(30192287-30192339)
chr4 (121-173)||(51625165-51625217)
chr4 (121-169)||(3669965-3670013)
chr4 (121-173)||(7061651-7061703)
chr4 (121-169)||(33790718-33790766)
chr4 (121-169)||(41711443-41711491)
chr4 (121-173)||(46396870-46396922)
chr4 (121-173)||(47464352-47464404)
chr4 (121-169)||(49579165-49579213)
chr4 (121-173)||(52247415-52247467)
chr4 (197-232)||(25233194-25233229)
chr4 (138-173)||(25869848-25869883)
chr4 (142-173)||(42517646-42517677)
chr4 (197-232)||(43237256-43237291)
chr4 (121-173)||(2653502-2653552)
chr4 (108-173)||(8175554-8175619)
chr4 (132-173)||(46878853-46878894)
chr4 (121-169)||(2066875-2066923)
chr4 (121-173)||(4972642-4972694)
chr4 (121-173)||(6643647-6643699)
chr4 (121-173)||(11288617-11288669)
chr4 (121-173)||(16821318-16821370)
chr4 (121-173)||(28500878-28500930)
chr4 (196-232)||(31370372-31370408)
chr4 (137-169)||(34321714-34321746)
chr4 (121-173)||(35311210-35311262)
chr4 (121-169)||(38405089-38405137)
chr4 (121-173)||(42616890-42616942)
chr4 (121-173)||(43237325-43237377)
chr4 (121-173)||(47358936-47358988)
chr4 (121-173)||(49428329-49428381)
chr4 (121-169)||(50263919-50263967)
[»] scaffold0294 (1 HSPs)
scaffold0294 (121-173)||(17117-17169)
[»] chr2 (18 HSPs)
chr2 (121-174)||(39443794-39443847)
chr2 (121-173)||(8947031-8947083)
chr2 (121-173)||(26607947-26607999)
chr2 (121-173)||(39691572-39691624)
chr2 (128-173)||(15435453-15435498)
chr2 (121-173)||(19937759-19937811)
chr2 (121-232)||(3323265-3323372)
chr2 (121-173)||(17695412-17695464)
chr2 (121-169)||(31448672-31448720)
chr2 (121-169)||(34120418-34120466)
chr2 (132-172)||(45169248-45169288)
chr2 (121-173)||(45235663-45235715)
chr2 (108-171)||(10005091-10005153)
chr2 (120-174)||(5789626-5789680)
chr2 (121-174)||(16805962-16806015)
chr2 (121-174)||(16845243-16845296)
chr2 (137-174)||(43699594-43699631)
chr2 (121-173)||(27501517-27501569)
[»] chr1 (29 HSPs)
chr1 (120-173)||(31042879-31042932)
chr1 (121-173)||(12039164-12039216)
chr1 (121-173)||(26093476-26093528)
chr1 (121-173)||(27687323-27687375)
chr1 (138-173)||(6160460-6160495)
chr1 (121-174)||(5179383-5179436)
chr1 (116-173)||(24880958-24881015)
chr1 (120-173)||(28749073-28749126)
chr1 (121-173)||(4659839-4659891)
chr1 (121-169)||(6267840-6267888)
chr1 (121-161)||(7352380-7352420)
chr1 (121-169)||(16395031-16395079)
chr1 (121-169)||(21909990-21910038)
chr1 (121-173)||(23168977-23169029)
chr1 (121-173)||(31978636-31978688)
chr1 (121-173)||(34031511-34031563)
chr1 (137-173)||(35538725-35538761)
chr1 (121-173)||(39864193-39864245)
chr1 (122-174)||(41080679-41080731)
chr1 (197-232)||(14757664-14757699)
chr1 (121-172)||(24991637-24991688)
chr1 (142-173)||(32970572-32970603)
chr1 (148-181)||(6365705-6365738)
chr1 (120-169)||(13579604-13579653)
chr1 (137-173)||(978857-978893)
chr1 (121-173)||(9307709-9307761)
chr1 (121-173)||(11449965-11450017)
chr1 (121-169)||(34332422-34332470)
chr1 (125-173)||(35682793-35682841)
[»] chr8 (21 HSPs)
chr8 (121-173)||(21216083-21216135)
chr8 (108-173)||(21649307-21649372)
chr8 (121-174)||(33765741-33765794)
chr8 (120-173)||(39329379-39329431)
chr8 (120-173)||(42972489-42972542)
chr8 (121-169)||(51198-51246)
chr8 (121-173)||(1875574-1875626)
chr8 (121-169)||(29226213-29226261)
chr8 (120-192)||(39329082-39329154)
chr8 (121-172)||(39482698-39482749)
chr8 (121-197)||(4428334-4428409)
chr8 (121-173)||(7172996-7173048)
chr8 (121-173)||(11976918-11976970)
chr8 (121-173)||(39405844-39405896)
chr8 (121-169)||(40996347-40996395)
chr8 (121-169)||(45425648-45425696)
chr8 (121-174)||(34948669-34948722)
chr8 (121-173)||(10179929-10179981)
chr8 (121-169)||(31271107-31271155)
chr8 (121-173)||(32476369-32476421)
chr8 (121-169)||(36967447-36967495)
[»] chr6 (16 HSPs)
chr6 (121-173)||(1063583-1063635)
chr6 (121-169)||(7072246-7072294)
chr6 (121-169)||(29363392-29363440)
chr6 (121-173)||(31894190-31894242)
chr6 (118-173)||(23142749-23142804)
chr6 (121-173)||(3720221-3720273)
chr6 (121-169)||(21010263-21010311)
chr6 (121-169)||(27448136-27448184)
chr6 (197-232)||(11143653-11143688)
chr6 (127-173)||(21804515-21804561)
chr6 (121-173)||(1781884-1781936)
chr6 (121-173)||(7920320-7920372)
chr6 (121-173)||(8114992-8115044)
chr6 (121-169)||(11655926-11655974)
chr6 (121-173)||(13909506-13909558)
chr6 (121-173)||(15058199-15058251)
[»] chr3 (26 HSPs)
chr3 (121-173)||(1778724-1778776)
chr3 (121-173)||(10366623-10366675)
chr3 (121-181)||(50035198-50035258)
chr3 (108-171)||(40462396-40462459)
chr3 (121-174)||(33491064-33491117)
chr3 (120-173)||(51837939-51837992)
chr3 (100-168)||(12736532-12736600)
chr3 (121-173)||(43253844-43253896)
chr3 (107-173)||(14194637-14194703)
chr3 (111-173)||(19611990-19612052)
chr3 (108-173)||(19609381-19609446)
chr3 (121-169)||(19823097-19823145)
chr3 (121-173)||(27471417-27471469)
chr3 (121-173)||(37312032-37312084)
chr3 (121-173)||(37772945-37772997)
chr3 (142-173)||(24569102-24569133)
chr3 (121-172)||(28690763-28690814)
chr3 (107-169)||(45811741-45811803)
chr3 (121-174)||(36460397-36460450)
chr3 (128-173)||(37695654-37695699)
chr3 (121-173)||(8679035-8679087)
chr3 (120-172)||(11632164-11632215)
chr3 (121-169)||(29023947-29023995)
chr3 (121-173)||(30190641-30190693)
chr3 (121-173)||(30861477-30861528)
chr3 (121-173)||(38795426-38795478)
[»] chr5 (19 HSPs)
chr5 (110-173)||(843519-843582)
chr5 (121-173)||(2232052-2232104)
chr5 (121-173)||(9515828-9515880)
chr5 (121-173)||(40530203-40530255)
chr5 (121-169)||(42922846-42922894)
chr5 (124-173)||(32440223-32440272)
chr5 (121-173)||(4818633-4818685)
chr5 (121-173)||(7827905-7827957)
chr5 (121-173)||(8698391-8698443)
chr5 (121-173)||(8724988-8725040)
chr5 (121-173)||(27542877-27542929)
chr5 (121-173)||(37184058-37184110)
chr5 (121-173)||(38508166-38508218)
chr5 (127-173)||(3076672-3076717)
chr5 (123-173)||(41478909-41478959)
chr5 (123-173)||(41492384-41492434)
chr5 (121-169)||(11796146-11796194)
chr5 (121-181)||(11904280-11904340)
chr5 (121-173)||(15818459-15818511)
[»] scaffold0188 (1 HSPs)
scaffold0188 (108-173)||(6819-6884)
[»] scaffold0330 (1 HSPs)
scaffold0330 (121-173)||(5472-5524)
[»] scaffold0095 (1 HSPs)
scaffold0095 (121-173)||(50286-50338)
[»] scaffold0003 (1 HSPs)
scaffold0003 (121-169)||(39174-39222)
[»] scaffold0018 (1 HSPs)
scaffold0018 (197-232)||(136104-136139)
[»] scaffold0159 (1 HSPs)
scaffold0159 (120-174)||(33999-34053)
[»] scaffold0012 (1 HSPs)
scaffold0012 (121-173)||(105766-105818)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 4958478 - 4958709
Alignment:
Q  1 ctctatcttatttgagtgttcattacctctctctttaatgttctcaataataaaaagattctaaaaccaataaaatatcaatattataaaggcactttat 100  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||    
T  4958478 ctctatcttatttgactgttcattacctctctctttaatattctcaataataaaaagattctaaaaccaataaaatatcaatattataaatgtacttcat 4958577  T
Q  101 ccgtcctaaaataacaattatttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaataatgaaataattatcgtttgctaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||    
T  4958578 ccgtcctaaaataacaattatttaaggtttgtgcataatttttaagaaaatgaataattatgttgatttcaataatgaaataattaccgtttgctaatta 4958677  T
Q  201 attatagttagtgaagtagttaagttcgatga 232  Q
    |||||||||||||||||||||||||| |||||    
T  4958678 attatagttagtgaagtagttaagtttgatga 4958709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 16904520 - 16904453
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaataatgaaataattatc 188  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| ||||||    
T  16904520 tttaaggtttgtgcaaaatttttaagaaaatgattaattgtgttgatttcaatagtaaaattattatc 16904453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 21759972 - 21760020
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  21759972 tttaaggtttgtgcatgattattaagaaaatgattaattgtgttgattt 21760020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 28103874 - 28103822
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  28103874 tttaaggtttgtgcacgattattaagaaaatgattaattgtgttgatttcaat 28103822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 5524521 - 5524469
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||| |||||||||  ||| ||||||||||||||||||||||||||||||||    
T  5524521 tttaaagtttgtgcacgattattaagaaaatgattaattgtgttgatttcaat 5524469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 8592428 - 8592480
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||| ||| ||||  ||||||||||||||||||||||||||    
T  8592428 tttaaggtttgtgcatgattattaaagaaatgattaattgtgttgatttcaat 8592480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 26974170 - 26974118
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||| ||||||||||||||||||||||||||    
T  26974170 tttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaat 26974118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 38391889 - 38391841
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||| |||| |||| ||||||||||||||||||||||||||||    
T  38391889 tttaaggtttatgcacaattattaagaaaatgattaattgtgttgattt 38391841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 759078 - 759127
Alignment:
Q  120 atttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    ||||||||||| |||| |||| ||||| ||||||||||||||||||||||    
T  759078 atttaaggtttatgcacaattattaaggaaatgattaattgtgttgattt 759127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 83526 - 83478
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||| |||| |||| ||||| ||||||||||||||||||||||    
T  83526 tttaaggtttatgcacaattattaaggaaatgattaattgtgttgattt 83478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 2850869 - 2850921
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||| ||||||||||| ||| ||||| |||||||||||| |||||||||||||    
T  2850869 tttatggtttgtgcatgattattaaggaaatgattaattatgttgatttcaat 2850921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 3178192 - 3178240
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||||||    
T  3178192 tttaaggtttgtgcatgattattaagtaaatgattgattgtgttgattt 3178240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 34100556 - 34100588
Alignment:
Q  142 ttaagaaaatgattaattgtgttgatttcaata 174  Q
    |||||||||||||||||||||||||||||||||    
T  34100556 ttaagaaaatgattaattgtgttgatttcaata 34100588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 34947641 - 34947589
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||||||  || ||||  ||||||||||||||||||||||||||    
T  34947641 tttaaggtttgtgcatgtttattaaagaaatgattaattgtgttgatttcaat 34947589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 44180346 - 44180294
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||| | ||  ||| ||||||||||||||||||||||||||||||||    
T  44180346 tttaaggtttatacacgattattaagaaaatgattaattgtgttgatttcaat 44180294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 46211572 - 46211524
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||| |||| |||| ||||| ||||||||||||||||||||||    
T  46211572 tttaaggtttatgcacaattattaaggaaatgattaattgtgttgattt 46211524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 2459610 - 2459559
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaa 172  Q
    ||||| |||||||||  ||| ||||| |||||||||||||||||||||||||    
T  2459610 tttaatgtttgtgcacgattattaaggaaatgattaattgtgttgatttcaa 2459559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 7457406 - 7457461
Alignment:
Q  118 ttatttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||| |||||||||  ||| |||| ||||||||||||| |||||||||||||    
T  7457406 ttatttaatgtttgtgcacgattattaaaaaaatgattaattatgttgatttcaat 7457461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 12631447 - 12631393
Alignment:
Q  120 atttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaata 174  Q
    ||||||||||||||||  ||| ||||| |||| ||||||||| ||||||||||||    
T  12631447 atttaaggtttgtgcacgattattaaggaaataattaattgtattgatttcaata 12631393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 7463354 - 7463302
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||| |||||||   || ||||| ||||||||||||||||||||||||||    
T  7463354 tttaaggattgtgcacggttattaaggaaatgattaattgtgttgatttcaat 7463302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 9786129 - 9786081
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||| ||||||  ||| ||||| ||||||||||||||||||||||    
T  9786129 tttaaggtctgtgcacgattattaaggaaatgattaattgtgttgattt 9786081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 19060389 - 19060437
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    ||||| ||||||| |||||||| ||  ||||||||||||||||||||||    
T  19060389 tttaaagtttgtgtataattttgaaagaaatgattaattgtgttgattt 19060437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 19271729 - 19271773
Alignment:
Q  129 ttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||  ||| |||| |||||||||||||||||||||||||||    
T  19271729 ttgtgcacgattattaaaaaaatgattaattgtgttgatttcaat 19271773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 24516277 - 24516329
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||| | ||  ||| |||| |||||||||||||||||||||||||||    
T  24516277 tttaaggtttatacacgattattaataaaatgattaattgtgttgatttcaat 24516329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 30866108 - 30866056
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||  ||||||||||||||||| ||||||||    
T  30866108 tttaaggtttgtgcacgattattaaagaaatgattaattgtgttaatttcaat 30866056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 48608999 - 48608955
Alignment:
Q  125 aggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||| ||||| ||| ||||| ||||||||||||||||||||||    
T  48608999 aggtttatgcatgattattaaggaaatgattaattgtgttgattt 48608955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 49101807 - 49101759
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    ||||||||||||  |  ||||||||||||||||||||||||||| ||||    
T  49101807 tttaaggtttgtttacgatttttaagaaaatgattaattgtgtttattt 49101759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 462093 - 462040
Alignment:
Q  120 atttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  462093 atttaagatttgtgcataatttttaagaaaatgattaattgtattgatttcaat 462040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 32884935 - 32884883
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  32884935 tttaaggtttgtgcacgattattaagaaaatgattaattgtgttgatttcaat 32884883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 49175921 - 49175973
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||||||||    
T  49175921 tttaaggtttgtgcatgatttttaagaaaatgattaattgtggagatttcaat 49175973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 17237282 - 17237335
Alignment:
Q  120 atttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||||||| ||| |||||||||| |||||||||||||||| ||||    
T  17237282 atttaaggtttgtgcatgattattaagaaaataattaattgtgttgattgcaat 17237335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 32469922 - 32469983
Alignment:
Q  108 aaaataacaattatttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    ||||||| | || |||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  32469922 aaaataatatttgtttaagatttatgcataattttaaagaaaatgattaattgtgttgattt 32469983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 52869206 - 52869153
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaata 174  Q
    ||||||||||||||| |||| ||||| |||| ||||||||||||||||||||||    
T  52869206 tttaaggtttgtgcacaattattaaggaaataattaattgtgttgatttcaata 52869153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 30192339 - 30192287
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||| |||||| ||  ||||||||||||||||||||||||||||||||||||    
T  30192339 tttaatgtttgtacacgatttttaagaaaatgattaattgtgttgatttcaat 30192287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 51625217 - 51625165
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||| |||||||||  ||| ||||||||||||||||||||||||||||||||    
T  51625217 tttaaagtttgtgcacgattattaagaaaatgattaattgtgttgatttcaat 51625165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 3670013 - 3669965
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||| ||| ||||| |||||||| |||||||||||||||||||||||    
T  3670013 tttaagatttatgcatgatttttaaaaaaatgattaattgtgttgattt 3669965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 7061651 - 7061703
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||| ||  ||| ||||| ||||||||||||||||||||||||||    
T  7061651 tttaaggtttgtacacgattattaaggaaatgattaattgtgttgatttcaat 7061703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 33790718 - 33790766
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||| ||||  ||| ||||||||||||||||||||||||||||    
T  33790718 tttaaggtttatgcacgattattaagaaaatgattaattgtgttgattt 33790766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 41711443 - 41711491
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    ||||||||||||||| |||||||| | |||||||||||| |||||||||    
T  41711443 tttaaggtttgtgcacaatttttatggaaatgattaattatgttgattt 41711491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 46396870 - 46396922
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||  ||||| ||||||||||||||||||||||||||    
T  46396870 tttaaggtttgtgcacgatcattaagtaaatgattaattgtgttgatttcaat 46396922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 47464352 - 47464404
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||| |||  ||| ||||| ||||||||||||||||||||||||||    
T  47464352 tttaaggtttgagcacgattattaaggaaatgattaattgtgttgatttcaat 47464404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 49579165 - 49579213
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    ||||| |||||||||| ||||||||  ||||||||||||||||||||||    
T  49579165 tttaaagtttgtgcatgatttttaaataaatgattaattgtgttgattt 49579213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 52247415 - 52247467
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||| |||||||  ||| ||||||||||||||||||||||| ||||||||    
T  52247415 tttaaggattgtgcacgattattaagaaaatgattaattgtgttaatttcaat 52247467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 25233229 - 25233194
Alignment:
Q  197 attaattatagttagtgaagtagttaagttcgatga 232  Q
    |||||||||||||||||||||||||||||| |||||    
T  25233229 attaattatagttagtgaagtagttaagttggatga 25233194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 173
Target Start/End: Original strand, 25869848 - 25869883
Alignment:
Q  138 atttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||| |||||||||||||||||||||||||||||    
T  25869848 attttttagaaaatgattaattgtgttgatttcaat 25869883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 42517646 - 42517677
Alignment:
Q  142 ttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||||||||||||||||||||||    
T  42517646 ttaagaaaatgattaattgtgttgatttcaat 42517677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 43237291 - 43237256
Alignment:
Q  197 attaattatagttagtgaagtagttaagttcgatga 232  Q
    |||||||||||||||||||||||||||||| |||||    
T  43237291 attaattatagttagtgaagtagttaagttggatga 43237256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 2653552 - 2653502
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||| ||||||||| ||| ||||  ||||||||||||||||||||||||||    
T  2653552 tttaagatttgtgcatgattattaa--aaatgattaattgtgttgatttcaat 2653502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 8175554 - 8175619
Alignment:
Q  108 aaaataacaattatttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||| | || |||| || |||||||| ||| |||| ||||||| |||||||||||||||||||    
T  8175554 aaaataatagttgtttatggcttgtgcatgattattaaaaaaatgaataattgtgttgatttcaat 8175619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 46878853 - 46878894
Alignment:
Q  132 tgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||| |||||||| |||||| |||||||||||||||||||||    
T  46878853 tgcacaatttttatgaaaataattaattgtgttgatttcaat 46878894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 2066923 - 2066875
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||| ||||  ||| ||||| ||||||||||||||||||||||    
T  2066923 tttaaggtttatgcacgattattaaggaaatgattaattgtgttgattt 2066875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 4972694 - 4972642
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||| ||||||||  ||| ||||  ||||||||||||||||||||||||||    
T  4972694 tttaagatttgtgcacgattattaatgaaatgattaattgtgttgatttcaat 4972642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 6643647 - 6643699
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||| ||||| |||  ||| ||||| ||||||||||||||||||||||||||    
T  6643647 tttaatgtttgagcacgattattaaggaaatgattaattgtgttgatttcaat 6643699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 11288617 - 11288669
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||| || |  ||| |||||||||||||||||||| |||||||||||    
T  11288617 tttaaggtttatgtacgattattaagaaaatgattaattgtattgatttcaat 11288669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 16821318 - 16821370
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||   |||||||||||||||||||||||||    
T  16821318 tttaaggtttgtgcacgattattaatgcaatgattaattgtgttgatttcaat 16821370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 28500878 - 28500930
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||| |||||||||  ||| ||||| |||||||| |||||||||||||||||    
T  28500878 tttaatgtttgtgcacgattattaaggaaatgattgattgtgttgatttcaat 28500930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 31370372 - 31370408
Alignment:
Q  196 aattaattatagttagtgaagtagttaagttcgatga 232  Q
    |||||||||||||||||| |||||||||||| |||||    
T  31370372 aattaattatagttagtggagtagttaagttggatga 31370408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 34321714 - 34321746
Alignment:
Q  137 aatttttaagaaaatgattaattgtgttgattt 169  Q
    |||| ||||||||||||||||||||||||||||    
T  34321714 aattattaagaaaatgattaattgtgttgattt 34321746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 35311210 - 35311262
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||| |||||||||||| |||| ||||||||    
T  35311210 tttaaggtttgtgcacgattattaaggaaatgattaattatgttaatttcaat 35311262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 38405089 - 38405137
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||||||||  ||| ||||| |||||||||||| |||||||||    
T  38405089 tttaaggtttgtgcacgattattaaggaaatgattaattctgttgattt 38405137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 42616890 - 42616942
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||| ||||||||| ||| ||||  |||||||||| |||||||||||||||    
T  42616890 tttaagttttgtgcatgattattaaagaaatgattaactgtgttgatttcaat 42616942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 43237377 - 43237325
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||| ||||  ||| ||||| ||||||||||||||||| ||||||||    
T  43237377 tttaaggtttatgcacgattattaaggaaatgattaattgtgtttatttcaat 43237325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 47358936 - 47358988
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||| |||||||||| || | ||||||||| ||| |||||||||||||||||    
T  47358936 tttaatgtttgtgcatgatgtctaagaaaattattgattgtgttgatttcaat 47358988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 49428329 - 49428381
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||| ||||  ||| ||||| ||||||||| ||||||||||||||||    
T  49428329 tttaaggtttttgcacgattattaaggaaatgattatttgtgttgatttcaat 49428381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 50263919 - 50263967
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||||||||  ||| |||||||||||||| | |||||||||||    
T  50263919 tttaaggtttgtgcacgattattaagaaaatgattcactgtgttgattt 50263967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 17169 - 17117
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  17169 tttaaggtttgtgcatgattattaagaaaatgattaattgtgttgatttcaat 17117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 39443847 - 39443794
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaata 174  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  39443847 tttaaggtttgtgcacaattattaagaaaatgattaattttgttgatttcaata 39443794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 8947031 - 8947083
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||    
T  8947031 tttaaagtttgtgcataattattaaggaaatgattaattgtgttgatttcaat 8947083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 26607947 - 26607999
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  26607947 tttaaggtttgtgcacgattattaagaaaatgattaattgtgttgatttcaat 26607999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 39691624 - 39691572
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  39691624 tttaaggtttgtgcacgattattaagaaaatgattaattgtgttgatttcaat 39691572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 15435498 - 15435453
Alignment:
Q  128 tttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||    
T  15435498 tttgtgcatgatttttaagaaaataattaattgtgttgatttcaat 15435453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 19937811 - 19937759
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||| ||||||||||||||||||||||||||    
T  19937811 tttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaat 19937759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 232
Target Start/End: Original strand, 3323265 - 3323372
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaataatgaaataattatcgtttgctaattaattatagttagtgaagtagt 220  Q
    |||||||||||||||  ||| |||  |||||||||||||||||||||||||||  | |||| | || | |||    ||||||| ||||||||| ||||||    
T  3323265 tttaaggtttgtgcacgattattataaaaatgattaattgtgttgatttcaatggtaaaattagtaacattt----attaattgtagttagtggagtagt 3323360  T
Q  221 taagttcgatga 232  Q
    |||||| |||||    
T  3323361 taagttggatga 3323372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 17695464 - 17695412
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||| |||||||||||||| |||||||||||    
T  17695464 tttaaggtttgtgcacgattattaaggaaatgattaattgtattgatttcaat 17695412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 31448672 - 31448720
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||||||||  ||| ||||| ||||||||||||||||||||||    
T  31448672 tttaaggtttgtgcacgattattaaggaaatgattaattgtgttgattt 31448720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 34120418 - 34120466
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    ||||| |||| ||||| ||| ||||||||||||||||||||||||||||    
T  34120418 tttaaagtttatgcatgattattaagaaaatgattaattgtgttgattt 34120466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 45169288 - 45169248
Alignment:
Q  132 tgcataatttttaagaaaatgattaattgtgttgatttcaa 172  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  45169288 tgcatactttttaagaaaataattaattgtgttgatttcaa 45169248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 45235715 - 45235663
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||| |||||||| |||||||||||||||||    
T  45235715 tttaaggtttgtgcacgattattaaggaaatgattgattgtgttgatttcaat 45235663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 10005091 - 10005153
Alignment:
Q  108 aaaataacaattatttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttca 171  Q
    ||||||||| |  ||||||||||||||| | ||| |||||||||||| ||||||||||||||||    
T  10005091 aaaataacagtcgtttaaggtttgtgcaca-tttataagaaaatgatcaattgtgttgatttca 10005153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 5789626 - 5789680
Alignment:
Q  120 atttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaata 174  Q
    ||||||||||||||||  ||| ||||| |||||||||||||| |||| |||||||    
T  5789626 atttaaggtttgtgcacgattattaaggaaatgattaattgtattgaattcaata 5789680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 16806015 - 16805962
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaata 174  Q
    |||||||||||||||  ||| ||||  |||||||||||||||||||||| ||||    
T  16806015 tttaaggtttgtgcacgattattaaagaaatgattaattgtgttgattttaata 16805962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 16845296 - 16845243
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaata 174  Q
    |||||||||||||||  ||| ||||  |||||||||||||||||||||| ||||    
T  16845296 tttaaggtttgtgcacgattattaaagaaatgattaattgtgttgattttaata 16845243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 43699594 - 43699631
Alignment:
Q  137 aatttttaagaaaatgattaattgtgttgatttcaata 174  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  43699594 aattattaagaaaatgattaactgtgttgatttcaata 43699631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 27501517 - 27501569
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||| || ||| ||||| ||||||| |||| |||||||||||||    
T  27501517 tttaaggtttgtgtatgattattaaggaaatgataaattatgttgatttcaat 27501569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 31042932 - 31042879
Alignment:
Q  120 atttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  31042932 atttaaggtttgtgcatgattattaaggaaatgattaattgtgttgatttcaat 31042879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 12039216 - 12039164
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||| ||||||||||||||||||||||||||    
T  12039216 tttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaat 12039164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 26093528 - 26093476
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||| ||||||||  ||| ||||||||||||||||||||||||||||||||    
T  26093528 tttaagatttgtgcacgattattaagaaaatgattaattgtgttgatttcaat 26093476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 27687375 - 27687323
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||||| |||| |||| |||||||||| ||||||||||||||||    
T  27687375 tttaaggtttgtgcacaattattaaaaaaatgattagttgtgttgatttcaat 27687323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 173
Target Start/End: Original strand, 6160460 - 6160495
Alignment:
Q  138 atttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||||||||||||||||||||||||||    
T  6160460 atttttaagaaaatgattaattgtgttgatttcaat 6160495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 5179383 - 5179436
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaata 174  Q
    |||||||||||| ||  ||| |||| ||||||||||||||||||||||||||||    
T  5179383 tttaaggtttgtacacgattcttaacaaaatgattaattgtgttgatttcaata 5179436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 24881015 - 24880958
Alignment:
Q  116 aattatttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||| |||||||||||||||||| ||| | |||||||| ||| |||||||||||||    
T  24881015 aattatgtaaggtttgtgcataattattacggaaatgattgattatgttgatttcaat 24880958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 28749126 - 28749073
Alignment:
Q  120 atttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||| ||||||||  ||| ||||| ||||||||||||||||||||||||||    
T  28749126 atttaagatttgtgcacgattattaaggaaatgattaattgtgttgatttcaat 28749073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 4659891 - 4659839
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||| ||||| ||||| | | ||||||||||||||||||||||||||||||||    
T  4659891 tttagggtttatgcatgaatattaagaaaatgattaattgtgttgatttcaat 4659839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 6267840 - 6267888
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||||||||  ||||||||  ||||||||||||||||||||||    
T  6267840 tttaaggtttgtgcactatttttaaagaaatgattaattgtgttgattt 6267888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 7352420 - 7352380
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgt 161  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  7352420 tttaaggtttgtgtattatttttaagaaaatgattaattgt 7352380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 16395031 - 16395079
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||| ||||  ||| ||||||||||||||||||||||||||||    
T  16395031 tttaaggtttatgcacgattattaagaaaatgattaattgtgttgattt 16395079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 21909990 - 21910038
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||| |||| |||| ||||| ||||||||||||||||||||||    
T  21909990 tttaaggtttatgcacaattattaaggaaatgattaattgtgttgattt 21910038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 23168977 - 23169029
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||| |||||||||  ||| |||||||||| |||||||||||||||||||||    
T  23168977 tttaaagtttgtgcacgattattaagaaaataattaattgtgttgatttcaat 23169029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 31978636 - 31978688
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||| |||||||||  ||| ||||||||| ||||||||||||||||||||||    
T  31978636 tttaaagtttgtgcacgattattaagaaaaagattaattgtgttgatttcaat 31978688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 34031511 - 34031563
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||| ||| ||||| ||||||||| ||||||||||| ||||    
T  34031511 tttaaggtttgtgcatgattattaaggaaatgattacttgtgttgattccaat 34031563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 35538761 - 35538725
Alignment:
Q  137 aatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||||| |||||||||||||||||||||    
T  35538761 aatttttaagaaaattattaattgtgttgatttcaat 35538725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 39864245 - 39864193
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||| |||||||||  ||| ||||| ||||||||||||||||||||||||||    
T  39864245 tttaaagtttgtgcacgattattaaggaaatgattaattgtgttgatttcaat 39864193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 41080731 - 41080679
Alignment:
Q  122 ttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaata 174  Q
    ||||||||| ||||| | |||||| ||||||||||||||||||||||| ||||    
T  41080731 ttaaggtttatgcatgaattttaaaaaaatgattaattgtgttgattttaata 41080679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 14757664 - 14757699
Alignment:
Q  197 attaattatagttagtgaagtagttaagttcgatga 232  Q
    ||||||| ||||||||||||||||||||||||||||    
T  14757664 attaattgtagttagtgaagtagttaagttcgatga 14757699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 24991637 - 24991688
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaa 172  Q
    |||||||||||| ||  ||| ||||| |||||||||||||||||||||||||    
T  24991637 tttaaggtttgtacacgattattaaggaaatgattaattgtgttgatttcaa 24991688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 32970572 - 32970603
Alignment:
Q  142 ttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||||||||||||||||||||||    
T  32970572 ttaagaaaatgattaattgtgttgatttcaat 32970603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 6365738 - 6365705
Alignment:
Q  148 aaatgattaattgtgttgatttcaataatgaaat 181  Q
    ||||||||||||||||||||||||||||| ||||    
T  6365738 aaatgattaattgtgttgatttcaataatcaaat 6365705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 13579604 - 13579653
Alignment:
Q  120 atttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    ||||||||||| ||||| ||| ||||  ||||||||||||||||||||||    
T  13579604 atttaaggtttatgcatgattattaaagaaatgattaattgtgttgattt 13579653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 978857 - 978893
Alignment:
Q  137 aatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  978857 aattcttaagaaaatgattagttgtgttgatttcaat 978893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 9307761 - 9307709
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||| ||  ||| ||||| |||||||||| |||||||||||||||    
T  9307761 tttaaggtttgtacacgattattaaggaaatgattaactgtgttgatttcaat 9307709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 11450017 - 11449965
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||| ||||| |||||| |||||||||||||    
T  11450017 tttaaggtttgtgcacgattattaaggaaatggttaattatgttgatttcaat 11449965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 34332470 - 34332422
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||| || |  |||||||||||||| |||||||||||||||||    
T  34332470 tttaaggtttctgtaagatttttaagaaaataattaattgtgttgattt 34332422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 35682793 - 35682841
Alignment:
Q  125 aggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||  ||||||||  ||| ||||||||||||||||||||||    
T  35682793 aggtttgtgcacgatttttaacgaaaagattaattgtgttgatttcaat 35682841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 21216083 - 21216135
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  21216083 tttaaggtttgtgcatgattattaaggaaatgattaattgtgttgatttcaat 21216135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 21649307 - 21649372
Alignment:
Q  108 aaaataacaattatttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||| |||| ||||||||||||| | |||||||||||||||| |||||| |||||||| ||||    
T  21649307 aaaataataattgtttaaggtttgtgtacaatttttaagaaaatgtttaattatgttgattccaat 21649372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 33765794 - 33765741
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaata 174  Q
    ||||||||||||||| |||||||||| |||||||||||| ||||||||| ||||    
T  33765794 tttaaggtttgtgcacaatttttaaggaaatgattaattatgttgattttaata 33765741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 39329431 - 39329379
Alignment:
Q  120 atttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||| |||||||| ||||||||||||| |||||||||||||||||||||||    
T  39329431 atttaagttttgtgcacaatttttaagaaa-tgattaattgtgttgatttcaat 39329379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 42972489 - 42972542
Alignment:
Q  120 atttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||||||  ||| |||||||||||||||||||| |||||||||||    
T  42972489 atttaaggtttgtgcacgattattaagaaaatgattaattgttttgatttcaat 42972542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 51246 - 51198
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  51246 tttaaggtttgtgcacgattattaagaaaatgattaattgtgttgattt 51198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 1875574 - 1875626
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||| ||||||||||||||||||||||||||    
T  1875574 tttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaat 1875626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 29226213 - 29226261
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||| ||| ||||||||| ||||||||||||||||||||||||||||    
T  29226213 tttaagatttatgcataattattaagaaaatgattaattgtgttgattt 29226261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 39329154 - 39329082
Alignment:
Q  120 atttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaataatgaaataattatcgttt 192  Q
    ||||||| |||||| | |||||||||||||||||||||||||||| |||| ||| || |||| | ||||||||    
T  39329154 atttaagttttgtgtacaatttttaagaaaatgattaattgtgttaattttaatgataaaattagtatcgttt 39329082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 39482749 - 39482698
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaa 172  Q
    |||||| ||||||||  ||| |||||||||||||||||||||||||||||||    
T  39482749 tttaagatttgtgcacgattattaagaaaatgattaattgtgttgatttcaa 39482698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 4428334 - 4428409
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaataatgaaataattatcgtttgctaa 197  Q
    |||||||||| || ||| |||||||||||||||||| |||||||||||| ||| || |||| |||||| ||| ||||    
T  4428334 tttaaggtttatgtata-tttttaagaaaatgattatttgtgttgattttaatgataaaattattatcatttactaa 4428409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 7173048 - 7172996
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||| || ||| ||||  ||||||||||||||||||||||||||    
T  7173048 tttaaggtttgtgtatcattattaaagaaatgattaattgtgttgatttcaat 7172996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 11976918 - 11976970
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||| ||| ||| | |||| |||||||||||||||||||||    
T  11976918 tttaaggtttgtgcatgattattatggaaatcattaattgtgttgatttcaat 11976970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 39405896 - 39405844
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||| ||||||||||||||||| ||||||||    
T  39405896 tttaaggtttgtgcacgattattaaggaaatgattaattgtgttaatttcaat 39405844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 40996347 - 40996395
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||| |||| |||| ||||| ||||||||||||||||||||||    
T  40996347 tttaaggtttatgcacaattgttaaggaaatgattaattgtgttgattt 40996395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 45425648 - 45425696
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||| ||| ||||| ||| ||||||||||||||||||||||||||||    
T  45425648 tttaagttttatgcatgattattaagaaaatgattaattgtgttgattt 45425696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 34948669 - 34948722
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaata 174  Q
    |||||| ||||| || |||| ||||| |||||||||||||||||||||| ||||    
T  34948669 tttaagatttgtacacaattattaaggaaatgattaattgtgttgatttaaata 34948722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 10179929 - 10179981
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| |||||||||||| || |||| |||||||||||    
T  10179929 tttaaggtttgtgcacgattattaagaaaatgagtagttgtattgatttcaat 10179981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 31271155 - 31271107
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    ||||||||||||| |  ||| |||||||||||||| |||||||||||||    
T  31271155 tttaaggtttgtgtacgattattaagaaaatgattgattgtgttgattt 31271107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 32476421 - 32476369
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||   || |||||||||||||| ||| |||||||||||||    
T  32476421 tttaaggtttgtgcacggttattaagaaaatgattgattctgttgatttcaat 32476369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 36967495 - 36967447
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||| ||||  ||| ||||| ||||||||||||||||||||||    
T  36967495 tttaaggtttatgcacgattattaaggaaatgattaattgtgttgattt 36967447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 1063583 - 1063635
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||| |||| || |||||||||||||||||||||||||||||||||||||||    
T  1063583 tttaaagtttatgtataatttttaagaaaatgattaattgtgttgatttcaat 1063635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 7072294 - 7072246
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  7072294 tttaaggtttgtgtataatttttaagaaaataattaattgtgttgattt 7072246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 29363440 - 29363392
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||| |||| |||| ||||||||||||||||||||||||||||    
T  29363440 tttaaggtttatgcacaattattaagaaaatgattaattgtgttgattt 29363392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 31894190 - 31894242
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||| |||||| || ||| ||||||||||||||||||||||||||||||||    
T  31894190 tttaagatttgtgtatgattattaagaaaatgattaattgtgttgatttcaat 31894242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 23142804 - 23142749
Alignment:
Q  118 ttatttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||| | ||  ||| ||||||||||||||||||||||||||||||||    
T  23142804 ttatttaaggtttatccacgattattaagaaaatgattaattgtgttgatttcaat 23142749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 3720221 - 3720273
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||  ||||||||||||||||||||||||||    
T  3720221 tttaaggtttgtgcacgattattaatgaaatgattaattgtgttgatttcaat 3720273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 21010311 - 21010263
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||| |||| |||| ||||||||||||||||||||||| ||||    
T  21010311 tttaaggtttatgcacaattattaagaaaatgattaattgtgttaattt 21010263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 27448136 - 27448184
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||| |||| |||| ||||| ||||||||||||||||||||||    
T  27448136 tttaaggtttttgcacaattattaaggaaatgattaattgtgttgattt 27448184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 11143653 - 11143688
Alignment:
Q  197 attaattatagttagtgaagtagttaagttcgatga 232  Q
    |||||||||||||||||||||||||||||| |||||    
T  11143653 attaattatagttagtgaagtagttaagttggatga 11143688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 21804515 - 21804561
Alignment:
Q  127 gtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||||||  |||||||||||||| || ||||||||    
T  21804515 gtttgtgcataatttttaaagaaatgattaattgtattaatttcaat 21804561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 1781936 - 1781884
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||| ||||  ||| |||||||||||||||||| ||||||| |||||    
T  1781936 tttaaggtttatgcacgattgttaagaaaatgattaattatgttgatctcaat 1781884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 7920372 - 7920320
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||| ||||||||  ||||||||  |||||||||||| |||||||||||||    
T  7920372 tttaagatttgtgcacgatttttaaagaaatgattaattttgttgatttcaat 7920320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 8114992 - 8115044
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||| ||||||| | ||||||||||||||||||||||| |||  ||||||||    
T  8114992 tttaaagtttgtgtacaatttttaagaaaatgattaattatgtcaatttcaat 8115044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 11655926 - 11655974
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||| ||||   || ||||||||||||||||||||||||||||    
T  11655926 tttaaggtttatgcacggttattaagaaaatgattaattgtgttgattt 11655974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 13909558 - 13909506
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||| |||||||||  ||| ||||| |||||||||| |||||||||||||||    
T  13909558 tttaaagtttgtgcacgattattaaggaaatgattaaatgtgttgatttcaat 13909506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 15058251 - 15058199
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||||||||||||||||  ||| ||||||||    
T  15058251 tttaaggtttgtgcacgattattaagaaaatgattaattaagttaatttcaat 15058199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 1778776 - 1778724
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  1778776 tttaaggtttgtgcatgattattaaggaaatgattaattgtgttgatttcaat 1778724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 10366623 - 10366675
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  10366623 tttaaggtttgtgcacgattattaagaaaatgattaattgtgttgatttcaat 10366675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 50035198 - 50035258
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaataatgaaat 181  Q
    |||||||||||||||| ||| |||||||||||| ||||| |||||||||||||||| ||||    
T  50035198 tttaaggtttgtgcatgattattaagaaaatgaataattatgttgatttcaataataaaat 50035258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 40462459 - 40462396
Alignment:
Q  108 aaaataacaattatttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttca 171  Q
    ||||||| |||| ||||||||||| || | |||||||||||||||||||||||| |||||||||    
T  40462459 aaaataataattgtttaaggtttgagcgtgatttttaagaaaatgattaattgttttgatttca 40462396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 33491064 - 33491117
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaata 174  Q
    |||||||||||||||  ||| ||||| |||||||||||||||||||||||||||    
T  33491064 tttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaata 33491117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 51837939 - 51837992
Alignment:
Q  120 atttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||||||| | | ||||| ||||||||||||||||||||||||||    
T  51837939 atttaaggtttgtgcatgagtattaagtaaatgattaattgtgttgatttcaat 51837992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 12736532 - 12736600
Alignment:
Q  100 tccgtcctaaaataacaattatttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatt 168  Q
    |||||| |||||||| | || ||||| |||||||||  ||||||||| |||||||||||||||||||||    
T  12736532 tccgtcataaaataatagttgtttaaagtttgtgcacgatttttaaggaaatgattaattgtgttgatt 12736600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 43253844 - 43253896
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||| ||||||||||||||||||||||||||    
T  43253844 tttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaat 43253896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 14194703 - 14194637
Alignment:
Q  107 taaaataacaattatttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||| |  |||||||||||||||  ||||||||  ||||||| ||||||||||||||||||    
T  14194703 taaaataacagtcgtttaaggtttgtgcacgatttttaaagaaatgatcaattgtgttgatttcaat 14194637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 19612052 - 19611990
Alignment:
Q  111 ataacaattatttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||| |||| ||||| ||||||| |  |||||||||||| |||||||||||||||||||||||    
T  19612052 ataataattgtttaaagtttgtgtacgatttttaagaaagtgattaattgtgttgatttcaat 19611990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 19609446 - 19609381
Alignment:
Q  108 aaaataacaattatttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||| |||  |||||| |||||| || | ||||||||||||||||| ||||||||||||||||    
T  19609446 aaaataataatcgtttaagatttgtgtatgaattttaagaaaatgattatttgtgttgatttcaat 19609381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 19823145 - 19823097
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||||||||  ||| ||||| ||||||||||||||||||||||    
T  19823145 tttaaggtttgtgcacgattattaaggaaatgattaattgtgttgattt 19823097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 27471469 - 27471417
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||| ||||||||  ||| |||||||||||||||||| |||||||||||||    
T  27471469 tttaagatttgtgcacgattattaagaaaatgattaattatgttgatttcaat 27471417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 37312084 - 37312032
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||| ||||  ||| ||||| ||||||||||||||||||||||||||    
T  37312084 tttaaggtttatgcacgattattaaggaaatgattaattgtgttgatttcaat 37312032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 37772945 - 37772997
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||| ||| ||||| |||||||||||||| |||||| ||||    
T  37772945 tttaaggtttgtgcatgattattaaggaaatgattaattgtattgattacaat 37772997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 24569102 - 24569133
Alignment:
Q  142 ttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||||||||||||||||||||||    
T  24569102 ttaagaaaatgattaattgtgttgatttcaat 24569133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 28690763 - 28690814
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaa 172  Q
    |||||||||||||||  ||| ||||  |||||||||||||||||||||||||    
T  28690763 tttaaggtttgtgcacgattattaaagaaatgattaattgtgttgatttcaa 28690814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 45811803 - 45811741
Alignment:
Q  107 taaaataacaattatttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||| | || |||||||||||||  | || ||||||||||||||||||| |||||||||    
T  45811803 taaaataatagttgtttaaggtttgtgtgtgatatttaagaaaatgattaattatgttgattt 45811741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 36460397 - 36460450
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaata 174  Q
    ||||| |||||||||  ||| |||||||||| |||||||||||| |||||||||    
T  36460397 tttaaagtttgtgcacgattattaagaaaattattaattgtgttaatttcaata 36460450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 37695654 - 37695699
Alignment:
Q  128 tttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||  ||| ||||| ||||||||||||||||||||||||||    
T  37695654 tttgtgcacgattattaaggaaatgattaattgtgttgatttcaat 37695699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 8679035 - 8679087
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||| ||| ||||  ||| ||||| ||||||||||||||||||||||||||    
T  8679035 tttaagatttatgcacgattattaaggaaatgattaattgtgttgatttcaat 8679087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 11632215 - 11632164
Alignment:
Q  120 atttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaa 172  Q
    ||||||| ||||||||  ||| |||| ||||||||||||||||||||||||||    
T  11632215 atttaagatttgtgcacgattattaa-aaaatgattaattgtgttgatttcaa 11632164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 29023947 - 29023995
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||| ||||  ||| |||| |||||||||||||||||||||||    
T  29023947 tttaaggtttatgcacgattattaaaaaaatgattaattgtgttgattt 29023995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 30190641 - 30190693
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||   || | ||| ||||||||||||||||||||||||||    
T  30190641 tttaaggtttgtgcacggttatgaaggaaatgattaattgtgttgatttcaat 30190693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 30861528 - 30861477
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||| ||||||||| ||||||| |||| | |||||||||||||||||||||    
T  30861528 tttaagatttgtgcatgatttttaggaaatt-attaattgtgttgatttcaat 30861477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 38795478 - 38795426
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||| |||||||||  || |||||| ||||||||||||||||| ||||||||    
T  38795478 tttaatgtttgtgcacgatatttaaggaaatgattaattgtgtttatttcaat 38795426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 843582 - 843519
Alignment:
Q  110 aataacaattatttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||| |||| |||||||||||||||  ||| |||||||||||||||||| |||||||||||||    
T  843582 aataataattgtttaaggtttgtgcacgattattaagaaaatgattaattttgttgatttcaat 843519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 2232052 - 2232104
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| |||||||||||| |||||||||||||||||||    
T  2232052 tttaaggtttgtgcacgattattaagaaaatgaataattgtgttgatttcaat 2232104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 9515880 - 9515828
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| |||||| |||||||||||||||||||||||||    
T  9515880 tttaaggtttgtgcacgattattaagataatgattaattgtgttgatttcaat 9515828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 40530203 - 40530255
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||| ||||||  ||| ||||||||||||||||||||||||||||||||    
T  40530203 tttaaggtctgtgcacgattattaagaaaatgattaattgtgttgatttcaat 40530255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 42922846 - 42922894
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||||||||    
T  42922846 tttaagatttgtgcatgattattaagaaaatgattaattgtgttgattt 42922894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 32440272 - 32440223
Alignment:
Q  124 aaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||| ||||||||  ||||||||||||||||| ||||||||    
T  32440272 aaggtttgtgcatgatttttaaagaaatgattaattgtgttaatttcaat 32440223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 4818685 - 4818633
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||| |||| |||||||||||||||||||||    
T  4818685 tttaaggtttgtgcacgattattaaggaaataattaattgtgttgatttcaat 4818633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 7827905 - 7827957
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||| ||  ||| |||||||||| |||||||||||||||||||||    
T  7827905 tttaaggtttgtacacgattattaagaaaataattaattgtgttgatttcaat 7827957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 8698443 - 8698391
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||  ||||||||||||||||||||||||||    
T  8698443 tttaaggtttgtgcacgattattaaagaaatgattaattgtgttgatttcaat 8698391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 8724988 - 8725040
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||  ||||||||||||||||||||||||||    
T  8724988 tttaaggtttgtgcacgattattaaagaaatgattaattgtgttgatttcaat 8725040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 27542929 - 27542877
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||| |||||||| |||||||||||||||||    
T  27542929 tttaaggtttgtgcacgattattaaggaaatgattgattgtgttgatttcaat 27542877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 37184058 - 37184110
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||| ||||||||  |||||||| |||||||||||||| ||||||||||||    
T  37184058 tttaagttttgtgcaagatttttaaaaaaatgattaattgagttgatttcaat 37184110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 38508166 - 38508218
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||| |||||||   ||||||||||||||||||||||||||| ||||||||    
T  38508166 tttaagatttgtgctcgatttttaagaaaatgattaattgtgttaatttcaat 38508218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 3076717 - 3076672
Alignment:
Q  127 gtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||| |||||| || |||||||||||||||||||||||||||    
T  3076717 gtttgtgcacaatttt-aacaaaatgattaattgtgttgatttcaat 3076672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 41478959 - 41478909
Alignment:
Q  123 taaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||   ||||||||||||||||||||||||| | ||||||||    
T  41478959 taaggtttgtgcgcgatttttaagaaaatgattaattgtgcttatttcaat 41478909  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 41492434 - 41492384
Alignment:
Q  123 taaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||||||   ||||||||||||||||||||||||| | ||||||||    
T  41492434 taaggtttgtgcgcgatttttaagaaaatgattaattgtgcttatttcaat 41492384  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 11796146 - 11796194
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    ||||||||||| ||| ||| || ||||||||| ||||||||||||||||    
T  11796146 tttaaggtttgcgcacaatgttaaagaaaatggttaattgtgttgattt 11796194  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 11904340 - 11904280
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaataatgaaat 181  Q
    ||||| |||||||||  || ||||||||| ||||||||||| |||| ||||||||| ||||    
T  11904340 tttaatgtttgtgcacgatctttaagaaagtgattaattgtattgagttcaataataaaat 11904280  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 15818459 - 15818511
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||| ||||  ||| ||||| ||||| ||||||||||||||||||||    
T  15818459 tttaaggtttatgcacgattattaaggaaatgtttaattgtgttgatttcaat 15818511  T

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Target: scaffold0188 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 6884 - 6819
Alignment:
Q  108 aaaataacaattatttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    ||||||||| || |||||||||||||| | ||||||||| |||||||||||||| || ||||||||    
T  6884 aaaataacagttgtttaaggtttgtgcgtgatttttaaggaaatgattaattgttttaatttcaat 6819  T

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Target: scaffold0330 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 5524 - 5472
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||| ||| ||| |||||||||||||||| |||||||| ||||||    
T  5524 tttaaggtttgtacatgattattaagaaaatgattaactgtgttgaattcaat 5472  T

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Target: scaffold0095 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 50338 - 50286
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||||||||||||  ||| ||||| ||||||||||||||||| ||||||||    
T  50338 tttaaggtttgtgcacgattattaaggaaatgattaattgtgttaatttcaat 50286  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 39222 - 39174
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgattt 169  Q
    |||||||||| |||| |||| ||||| ||||||||||||||||||||||    
T  39222 tttaaggtttttgcacaattattaaggaaatgattaattgtgttgattt 39174  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 136104 - 136139
Alignment:
Q  197 attaattatagttagtgaagtagttaagttcgatga 232  Q
    |||||||||||||||||||||||||||||| |||||    
T  136104 attaattatagttagtgaagtagttaagtttgatga 136139  T

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Target: scaffold0159 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 33999 - 34053
Alignment:
Q  120 atttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaata 174  Q
    ||||||||||||||||  ||| ||||| |||||||||||||| |||| |||||||    
T  33999 atttaaggtttgtgcacgattattaaggaaatgattaattgtattgaattcaata 34053  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 105818 - 105766
Alignment:
Q  121 tttaaggtttgtgcataatttttaagaaaatgattaattgtgttgatttcaat 173  Q
    |||||| ||| ||||| ||| ||||| ||||||||||||||||| ||||||||    
T  105818 tttaagatttatgcatgattattaagtaaatgattaattgtgtttatttcaat 105766  T

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