View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_low_42 (Length: 237)
Name: NF3564_low_42
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 4708999 - 4709142
Alignment:
| Q |
1 |
tcattttttcaatcaaattagtgaaaaacagaaaattgagcgaaaaactagataacttcaaatgtttgagatttctaaatataacccaccattactcaac |
100 |
Q |
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| T |
4708999 |
tcattttttcaatcaaattagtgaaaaacagaaaattgagcgaaaaactagataacttcaaatgtttgagatttctaaatataacccaccattactcaac |
4709098 |
T |
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| Q |
101 |
caatataacatataatccagtgtgaagcccatgcatagtagcgc |
144 |
Q |
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| T |
4709099 |
caatataacatataatccagtgtgaagctcatgcatagtagcgc |
4709142 |
T |
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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 4746947 - 4747081
Alignment:
| Q |
4 |
ttttttcaatcaaattagtgaaaaacagaaaattgagcgaaaaactagataacttcaaatgtttgagatttctaaatataacccaccattactcaaccaa |
103 |
Q |
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|||| ||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||||||||||| |||| |||| ||||||| |||||||||| ||| |
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| T |
4746947 |
ttttgtcaatcaaattagtgaaaaactgaaaattaagctaaaaagtagataacttcaaatgtttgaaattttcaaatctaacccaacattactcaatcaa |
4747046 |
T |
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| Q |
104 |
tataacatataatccagtgtgaagcccatgcatag |
138 |
Q |
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| T |
4747047 |
taaaacagataatacagtgtgaagctcatgcatag |
4747081 |
T |
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