View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_low_48 (Length: 211)
Name: NF3564_low_48
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 32460979 - 32460797
Alignment:
| Q |
19 |
aaaccgtacacgtgaaaacacggcactgttaacaaacacaccgcaggactcgccgtcggaatcctaacggcattgtatgccgccaccgtcgccgtcaagt |
118 |
Q |
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| T |
32460979 |
aaaccgtacacgtgaaaacacggcactgttaacaaacacaccgcaggattcgccgtcggaatcctaacggcattgtatgccgccaccgtcgccgtcaagt |
32460880 |
T |
|
| Q |
119 |
tgcgatgagtaagcatcactcctttcgatttccctgtggttcctgatattagagatataaaagttagttatattcatctcact |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
32460879 |
tgcgatgagtaagcatcactcctttcgatttccctgtggttcctgatattagagatataaaagctagttatattcatttcact |
32460797 |
T |
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