View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_low_5 (Length: 525)
Name: NF3564_low_5
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_low_5 |
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| [»] scaffold1515 (1 HSPs) |
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| [»] scaffold1889 (1 HSPs) |
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| [»] scaffold1723 (1 HSPs) |
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Alignment Details
Target: scaffold1515 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: scaffold1515
Description:
Target: scaffold1515; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 332 - 505
Target Start/End: Original strand, 1 - 174
Alignment:
| Q |
332 |
aagagatgactgcgtcatctgatcccggcaaaccctagcagaaagcactggtgcaatctgactgaacagatcataaagctggctctcattcacgttccgt |
431 |
Q |
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| T |
1 |
aagagatgactgcgtcatctgatcccggcaaaccctagcagaaagcactggtgcaatctgactgaacagatcataaagctggccctcattgacgttcctt |
100 |
T |
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| Q |
432 |
tcgagatcaccaacgtataatgatgcagtctcaaatcttccggtaccggtcaaagctgctggaacaacgatctt |
505 |
Q |
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| T |
101 |
tcgagatcaccaacgtataaggaagcggtctcaaatcttccagtaccggtcaaagctgctggaacaacgatctt |
174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 9e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 281 - 505
Target Start/End: Original strand, 14408485 - 14408709
Alignment:
| Q |
281 |
ctcgaaatacaaaccatcacgagcgttggagtagttaacatagccatatccaagagatgactgcgtcatctgatcccggcaaaccctagcagaaagcact |
380 |
Q |
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| T |
14408485 |
ctcgaaatacaaaccatcacgagcgttggagtagttaacatagccataaccaagagatgactgcgtcatctgatctctgcaaaccctaacagaaatcaca |
14408584 |
T |
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| Q |
381 |
ggtgcaatctgactgaacagatcataaagctggctctcattcacgttccgttcgagatcaccaacgtataatgatgcagtctcaaatcttccggtaccgg |
480 |
Q |
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| T |
14408585 |
ggggcaatctggctgaacagatcatacagctgcgcatcatttacgttcccttgaagatcaccgacgtacaaagaagaattctcaaatcttccagcactgg |
14408684 |
T |
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| Q |
481 |
tcaaagctgctggaacaacgatctt |
505 |
Q |
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| T |
14408685 |
tcaaagctgctggaacaacgatctt |
14408709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 14408258 - 14408338
Alignment:
| Q |
57 |
ttagtaatcatatataggcatcaaatttaattaagatttgcaataagttttgaaaaacctaacccttatttttttctctcc |
137 |
Q |
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| T |
14408258 |
ttagtaatcatatatagtcatcaaatttaattaagatttgcaataagttttgaaaaacctaacccttatctttttctctcc |
14408338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1889 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold1889
Description:
Target: scaffold1889; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 292 - 466
Target Start/End: Complemental strand, 1019 - 845
Alignment:
| Q |
292 |
aaccatcacgagcgttggagtagttaacatagccatatccaagagatgactgcgtcatctgatcccggcaaaccctagcagaaagcactggtgcaatctg |
391 |
Q |
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| T |
1019 |
aaccatcacgagcgttggagaagttgacatagccataaccaagagatgactgcgtcatctgatccctacaaaccctgacggaaataacgtggccaatctg |
920 |
T |
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| Q |
392 |
actgaacagatcataaagctggctctcattcacgttccgttcgagatcaccaacgtataatgatgcagtctcaaa |
466 |
Q |
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| || | |||||||||||| ||||||||| |||| ||| |||||||||||||| ||||| ||| ||||||| |
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| T |
919 |
atagagaggttcataaagctgggcctcattcaccttcctttcaagatcaccaacgtacaatgaagcattctcaaa |
845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1723 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1723
Description:
Target: scaffold1723; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 691 - 727
Alignment:
| Q |
3 |
gacttaaaaacatgattataaatactaggcttttact |
39 |
Q |
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| T |
691 |
gacttaaaaacatgattataaatactagggttttact |
727 |
T |
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