View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3564_low_6 (Length: 524)

Name: NF3564_low_6
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3564_low_6
NF3564_low_6
[»] chr6 (12 HSPs)
chr6 (123-247)||(10793523-10793647)
chr6 (125-247)||(10792483-10792605)
chr6 (124-247)||(7001718-7001841)
chr6 (124-247)||(8238069-8238192)
chr6 (152-247)||(19237576-19237671)
chr6 (124-217)||(8238815-8238908)
chr6 (171-247)||(5860550-5860626)
chr6 (171-247)||(25359499-25359574)
chr6 (124-247)||(29374988-29375111)
chr6 (175-247)||(17280695-17280767)
chr6 (170-224)||(17279907-17279961)
chr6 (170-247)||(8683848-8683924)
[»] chr1 (10 HSPs)
chr1 (123-247)||(34267976-34268100)
chr1 (125-247)||(34269030-34269152)
chr1 (156-247)||(34275296-34275387)
chr1 (129-247)||(24790800-24790918)
chr1 (143-247)||(17239370-17239474)
chr1 (143-247)||(17238597-17238701)
chr1 (154-247)||(16801973-16802066)
chr1 (175-247)||(42026896-42026968)
chr1 (175-247)||(42031689-42031761)
chr1 (124-247)||(16802627-16802750)
[»] chr7 (8 HSPs)
chr7 (123-215)||(7834885-7834977)
chr7 (124-247)||(45551750-45551873)
chr7 (175-247)||(5995253-5995325)
chr7 (168-247)||(45550998-45551077)
chr7 (155-247)||(27268218-27268310)
chr7 (155-247)||(41970888-41970980)
chr7 (124-247)||(27258054-27258176)
chr7 (179-247)||(5997611-5997679)
[»] chr2 (9 HSPs)
chr2 (124-247)||(45631084-45631207)
chr2 (162-247)||(16591509-16591594)
chr2 (156-247)||(18767546-18767637)
chr2 (170-247)||(9243994-9244070)
chr2 (143-224)||(29558175-29558255)
chr2 (153-224)||(9244267-9244338)
chr2 (174-252)||(18237618-18237696)
chr2 (174-247)||(18236657-18236730)
chr2 (124-165)||(45630275-45630316)
[»] chr4 (23 HSPs)
chr4 (137-247)||(11791361-11791471)
chr4 (124-244)||(11792263-11792383)
chr4 (124-224)||(34836773-34836873)
chr4 (124-247)||(34837916-34838039)
chr4 (124-224)||(34978367-34978467)
chr4 (125-247)||(20627527-20627649)
chr4 (125-247)||(31135170-31135292)
chr4 (173-247)||(31135892-31135966)
chr4 (180-247)||(12921863-12921930)
chr4 (153-247)||(31914523-31914617)
chr4 (175-247)||(12206764-12206836)
chr4 (124-247)||(23089215-23089338)
chr4 (170-247)||(12921129-12921205)
chr4 (179-247)||(6311784-6311852)
chr4 (180-224)||(42523225-42523269)
chr4 (129-224)||(20628289-20628383)
chr4 (124-247)||(23088276-23088399)
chr4 (184-247)||(48314367-48314430)
chr4 (179-243)||(6310823-6310887)
chr4 (175-247)||(12210914-12210986)
chr4 (175-247)||(31689177-31689249)
chr4 (183-247)||(31908357-31908421)
chr4 (124-224)||(54501587-54501687)
[»] chr8 (11 HSPs)
chr8 (125-247)||(30971954-30972074)
chr8 (124-247)||(1636848-1636971)
chr8 (124-224)||(28965798-28965898)
chr8 (170-247)||(30971285-30971362)
chr8 (143-247)||(5152417-5152521)
chr8 (175-247)||(16106020-16106092)
chr8 (175-247)||(16113260-16113332)
chr8 (180-226)||(1637573-1637619)
chr8 (189-247)||(23220008-23220066)
chr8 (187-224)||(32744033-32744070)
chr8 (175-247)||(16101523-16101595)
[»] chr5 (2 HSPs)
chr5 (155-247)||(33471165-33471257)
chr5 (180-247)||(33471854-33471921)
[»] chr3 (13 HSPs)
chr3 (153-247)||(4300933-4301027)
chr3 (175-247)||(54285811-54285883)
chr3 (180-247)||(40929858-40929925)
chr3 (170-247)||(2841198-2841274)
chr3 (174-247)||(27473857-27473930)
chr3 (180-247)||(14460134-14460201)
chr3 (174-247)||(27474875-27474948)
chr3 (154-247)||(33148274-33148367)
chr3 (179-247)||(27317475-27317543)
chr3 (187-247)||(27359843-27359903)
chr3 (175-245)||(17619140-17619210)
chr3 (187-247)||(28422853-28422913)
chr3 (179-247)||(33147332-33147400)


Alignment Details
Target: chr6 (Bit Score: 101; Significance: 8e-50; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 123 - 247
Target Start/End: Original strand, 10793523 - 10793647
Alignment:
Q  123 gtacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataa 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  10793523 gtacatttgtgccctttatatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaagtgaaaaggtgttgcttgctaaaatagaccttgataa 10793622  T
Q  223 aatggtgtggatctattgtagcaaa 247  Q
    ||||| |||| ||||||||||||||    
T  10793623 aatggagtgggtctattgtagcaaa 10793647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 125 - 247
Target Start/End: Complemental strand, 10792605 - 10792483
Alignment:
Q  125 acatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaa 224  Q
    ||||||||||||||   |||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10792605 acatttgtgcccttctgatttaatttgtccaaaaaataaaaacaagggtctttgtgtccaaatgaaaaggtgttgcttgctaaaatagaccttcataaaa 10792506  T
Q  225 tggtgtggatctattgtagcaaa 247  Q
    |||  ||| ||||||||||||||    
T  10792505 tggaatgggtctattgtagcaaa 10792483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 7001718 - 7001841
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaa 223  Q
    ||||||||| ||||||| |||||||||| |||||||| |||| |||||||  |||||||||| |||||||||||||| ||||| ||||||||||||||||    
T  7001718 tacatttgttccctttagatttaatttgtccaaaaaacaaaaacaagggtcattgtgtccaagtgaaaaggtgttgcatgctaaaatagaccttcataaa 7001817  T
Q  224 atggtgtggatctattgtagcaaa 247  Q
    |||  |||| ||||||| ||||||    
T  7001818 atgaagtgggtctattgcagcaaa 7001841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 8238192 - 8238069
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaa 223  Q
    |||||||||||||||||  |||||||||| ||||||| ||||  || |||||||| |||||| ||||||||||||| ||| |||||||||| ||||||||    
T  8238192 tacatttgtgccctttagttttaatttgctcaaaaaacaaaaataaaggtttttgggtccaattgaaaaggtgttggttgatagaatagactttcataaa 8238093  T
Q  224 atggtgtggatctattgtagcaaa 247  Q
    |  | |||  ||||||||||||||    
T  8238092 aatgagtgagtctattgtagcaaa 8238069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 247
Target Start/End: Original strand, 19237576 - 19237671
Alignment:
Q  152 cccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||| |||| ||||||| ||| ||||||| ||||||||||||| |||||| ||||||||||||| |||  | |||| ||||||||||||||    
T  19237576 cccaaaaaacaaaaacaagggtctttatgtccaagtgaaaaggtgttggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaa 19237671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 8238815 - 8238908
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagacctt 217  Q
    |||||||||||||||||  |||||||||| ||||||| ||||  |||||||||||||||||| ||||||  ||||| |||||| |||| |||||    
T  8238815 tacatttgtgccctttaattttaatttgctcaaaaaacaaaaataagggtttttgtgtccaattgaaaaaatgttggttgctaaaataaacctt 8238908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 5860626 - 5860550
Alignment:
Q  171 ggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||| |||||||||||||| |||||  |||||| |||| ||||||||||||  | |||| ||||||||||||||    
T  5860626 ggtttttttgtccaaatgaaaatgtgtttgttgctaaaatacaccttcataaaaatgagtgggtctattgtagcaaa 5860550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 25359574 - 25359499
Alignment:
Q  171 ggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    |||||||| |||||||| ||||||||||| |||||| ||||||| |||||||||||  |||  ||||||||||||||    
T  25359574 ggtttttg-gtccaaataaaaaggtgttggttgctaaaatagactttcataaaatgaagtgagtctattgtagcaaa 25359499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 29374988 - 29375111
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaa 223  Q
    |||| ||||| ||||||  ||||||| |  ||||||| |||| || || | ||| ||||||| |||||||||| | ||||||| ||| ||||||||| ||    
T  29374988 tacaattgtgtcctttaattttaattggttcaaaaaacaaaaacatggatatttttgtccaagtgaaaaggtgctccttgctaaaatggaccttcatgaa 29375087  T
Q  224 atggtgtggatctattgtagcaaa 247  Q
    |  | |||||||||||||||||||    
T  29375088 aatgagtggatctattgtagcaaa 29375111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 17280695 - 17280767
Alignment:
Q  175 tttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||| ||||||||||||| |||||| |||||||||| || |||  | |||| || |||||||||||    
T  17280695 tttgtgtccaagtgaaaaggtgttggttgctaaaatagaccttaatgaaaatgagtgggtcaattgtagcaaa 17280767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 17279961 - 17279907
Alignment:
Q  170 gggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaa 224  Q
    |||| ||||||||||| | |||||||| || |||||| |||||||||||||||||    
T  17279961 gggtatttgtgtccaagtaaaaaggtgctggttgctaaaatagaccttcataaaa 17279907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 8683848 - 8683924
Alignment:
Q  170 gggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||  |||||||| ||||| ||||| |||||| ||||||||||||| |||  | |||| ||||||||||||||    
T  8683848 gggttttttggtccaaat-aaaagatgttggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaa 8683924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 8e-50; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 34268100 - 34267976
Alignment:
Q  123 gtacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataa 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  34268100 gtacatttgtgccctttatatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaagtgaaaaggtgttgcttgctaaaatagaccttgataa 34268001  T
Q  223 aatggtgtggatctattgtagcaaa 247  Q
    ||||| |||| ||||||||||||||    
T  34268000 aatggagtgggtctattgtagcaaa 34267976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 125 - 247
Target Start/End: Original strand, 34269030 - 34269152
Alignment:
Q  125 acatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaa 224  Q
    ||||||||||||||   |||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34269030 acatttgtgcccttctgatttaatttgtccaaaaaataaaaacaagggtctttgtgtccaaatgaaaaggtgttgcttgctaaaatagaccttcataaaa 34269129  T
Q  225 tggtgtggatctattgtagcaaa 247  Q
    |||  ||| ||||||||||||||    
T  34269130 tggaatgggtctattgtagcaaa 34269152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 34275296 - 34275387
Alignment:
Q  156 aaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| ||||||||||||||    
T  34275296 aaaaataaaaacaagggtctttgtgtccaaatgaaaaggtgttgcttgctaaaatagaccttcataaaatggaatgggtctattgtagcaaa 34275387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 129 - 247
Target Start/End: Original strand, 24790800 - 24790918
Alignment:
Q  129 ttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggt 228  Q
    ||||| |||||| ||||||||||||||||||| ||||  | |||||||||||||||| |||||| ||||||||| ||| |||||||||||||||||||      
T  24790800 ttgtgtcctttagatttaatttgcccaaaaaacaaaaataggggtttttgtgtccaagtgaaaaagtgttgctttctaaaatagaccttcataaaatgaa 24790899  T
Q  229 gtggatctattgtagcaaa 247  Q
    |||| ||||||||||||||    
T  24790900 gtgggtctattgtagcaaa 24790918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 143 - 247
Target Start/End: Original strand, 17239370 - 17239474
Alignment:
Q  143 tttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgta 242  Q
    |||| ||| ||||||||| |||| || ||||||||  ||||||||||||||||| | ||||||| |||||||||||||||||  | |||| |||||||||    
T  17239370 tttagttttcccaaaaaacaaaaacatgggttttttggtccaaatgaaaaggtgctacttgctaaaatagaccttcataaaaatgagtgggtctattgta 17239469  T
Q  243 gcaaa 247  Q
    |||||    
T  17239470 gcaaa 17239474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 17238701 - 17238597
Alignment:
Q  143 tttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgta 242  Q
    |||| ||| |||| |||| |||| || |||| |||  ||||||| ||||||||| | ||||||| |||||||||||||||||  | |||| |||||||||    
T  17238701 tttagttttcccagaaaacaaaaacatgggtcttttggtccaaacgaaaaggtgctacttgctaaaatagaccttcataaaaatgagtgggtctattgta 17238602  T
Q  243 gcaaa 247  Q
    |||||    
T  17238601 gcaaa 17238597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 16802066 - 16801973
Alignment:
Q  154 caaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||| |||| || |||| ||| ||||||| ||||||||||   ||||||| ||||||||||||| |||  | |||| ||||||||||||||    
T  16802066 caaaaaacaaaaacatgggtatttttgtccaagtgaaaaggtgccccttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaa 16801973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 42026968 - 42026896
Alignment:
Q  175 tttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||| ||||||||||  | |||||| ||||||||||||| |||  | |||| ||||||||||||||    
T  42026968 tttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaa 42026896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 42031689 - 42031761
Alignment:
Q  175 tttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||| ||||||||||  | |||||| ||||||||||||| |||  | |||| ||||||||||||||    
T  42031689 tttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaa 42031761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 16802627 - 16802750
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaa 223  Q
    |||||||||| ||||||  ||||||| |  ||||||| ||||  | ||||  || ||||||| |||||||||  | ||||||| |||||||||| |||||    
T  16802627 tacatttgtgtcctttaattttaattggttcaaaaaacaaaaatatgggtccttttgtccaagtgaaaaggtacttcttgctaaaatagacctttataaa 16802726  T
Q  224 atggtgtggatctattgtagcaaa 247  Q
    |  | |||| ||||||||||||||    
T  16802727 aatgagtgggtctattgtagcaaa 16802750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 7834885 - 7834977
Alignment:
Q  123 gtacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagacc 215  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| ||||||| || ||||||||    
T  7834885 gtacatttgtgccctttatatttaatttgcccaaaaaataaaagcaagggttcttgtatccaagtgaaaaggttttgcttgttaaaatagacc 7834977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 45551750 - 45551873
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaag-caagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataa 222  Q
    ||||||| ||||||| | |||| ||||| |||||||| ||||  ||||||| ||| |||| |||||||||||||||| |||||| ||||||||||||| |    
T  45551750 tacatttatgcccttca-attttatttgtccaaaaaacaaaaaacaagggtctttttgtcaaaatgaaaaggtgttggttgctaaaatagaccttcatga 45551848  T
Q  223 aatggtgtggatctattgtagcaaa 247  Q
    ||| | |||| ||||||||||||||    
T  45551849 aattgagtgggtctattgtagcaaa 45551873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 5995325 - 5995253
Alignment:
Q  175 tttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||| |||  | |||| ||||||||||||||    
T  5995325 tttgtgtccaaatgaaaaggtgttggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaa 5995253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 45551077 - 45550998
Alignment:
Q  168 aagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    |||||| ||| |||| |||||||||||||||| |||||| ||||||||||||| |||| | |||| ||||||||||||||    
T  45551077 aagggtctttttgtcaaaatgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtgggtctattgtagcaaa 45550998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 27268218 - 27268310
Alignment:
Q  155 aaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    |||||||||||  || ||| ||| ||||||| |||||||||| || |||||| ||||||||||||| |||  | |||||||||||||| ||||    
T  27268218 aaaaaataaaaataaaggtctttatgtccaagtgaaaaggtgctgattgctaaaatagaccttcatgaaaatgagtggatctattgtatcaaa 27268310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 41970980 - 41970888
Alignment:
Q  155 aaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    |||||| |||| ||||||| ||  ||||||| ||||||||||||| |||||| |||||| |||||| |||  | |||| ||||||||||||||    
T  41970980 aaaaaacaaaaacaagggtattcttgtccaagtgaaaaggtgttggttgctaaaatagatcttcatgaaaatgagtgggtctattgtagcaaa 41970888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 27258054 - 27258176
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaataga-ccttcataa 222  Q
    |||||||||| ||||||  ||||||| | | |||||| |||   |||||| ||| ||||||| ||||||||||||| |||||| |||||| ||||||| |    
T  27258054 tacatttgtgtcctttaattttaattcgtcaaaaaaaaaaat--aagggtctttatgtccaagtgaaaaggtgttgattgctaaaatagacccttcatga 27258151  T
Q  223 aatggtgtggatctattgtagcaaa 247  Q
    ||  | |||||||||||| ||||||    
T  27258152 aaatgagtggatctattgcagcaaa 27258176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 5997611 - 5997679
Alignment:
Q  179 tgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||| |||||||||| || |||||| ||||||||||||| |||  | |||| ||||||||||||||    
T  5997611 tgtccaagtgaaaaggtgctggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaa 5997679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 45631084 - 45631207
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaa 223  Q
    |||||||||| |||||| ||||||||| ||||||||| ||||  |||||||||| ||||||| || |||||||| |||||||| ||||||||||||||||    
T  45631084 tacatttgtgtcctttagatttaatttacccaaaaaacaaaaataagggtttttatgtccaagtgtaaaggtgtagcttgctaaaatagaccttcataaa 45631183  T
Q  224 atggtgtggatctattgtagcaaa 247  Q
    |||  |||| ||||||||| ||||    
T  45631184 atgaagtgggtctattgtaacaaa 45631207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 16591509 - 16591594
Alignment:
Q  162 aaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||| ||||||||||||| ||||    ||| ||||||||||||||    
T  16591509 aaaaacaagggtttttgtgtccaagtgaaaaggtgttggttgctaaaatagaccttcatgaaattaaatgggtctattgtagcaaa 16591594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 18767546 - 18767637
Alignment:
Q  156 aaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    |||||| ||| ||||||| |||||||| || ||||||||||||| |||||| |||||||||| ||||||  | |||  ||||||||||||||    
T  18767546 aaaaatcaaaacaagggtctttgtgtctaagtgaaaaggtgttggttgctaaaatagacctttataaaaatgagtgagtctattgtagcaaa 18767637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 9244070 - 9243994
Alignment:
Q  170 gggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||| ||||||||||||||||| |   ||||| |||||||||||||||||||  |||| ||||||||||||||    
T  9244070 gggtttttg-gtccaaatgaaaaggtgctcggtgctaaaatagaccttcataaaatgaagtgggtctattgtagcaaa 9243994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 29558255 - 29558175
Alignment:
Q  143 tttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaa 224  Q
    |||||||| ||||||||| |||| ||||  | ||||||||||| | ||||||||||| |||||| |||||||||||||||||    
T  29558255 tttaattttcccaaaaaacaaaaacaagaatctttgtgtccaagtaaaaaggtgttggttgcta-aatagaccttcataaaa 29558175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 9244338 - 9244267
Alignment:
Q  153 ccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaa 224  Q
    |||||| | |||| ||||||| ||  ||||||| |||||||||||||  ||||| |||||||||||||||||    
T  9244338 ccaaaataaaaaaacaagggtgttattgtccaactgaaaaggtgttggatgctaaaatagaccttcataaaa 9244267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 18237618 - 18237696
Alignment:
Q  174 ttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaagctat 252  Q
    |||| |||||||| |||||||||   ||||||| |||||||||||| ||||| | |||| ||||||||| |||| ||||    
T  18237618 ttttatgtccaaaggaaaaggtgcatcttgctaaaatagaccttcacaaaatagagtgggtctattgtaacaaacctat 18237696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 18236730 - 18236657
Alignment:
Q  174 ttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||| ||||| | | || |||||| |||||||    
T  18236730 ttttgtgtccaaaggaaaaggtgcatcttgctaaaatagaccttcacaaaatagagcgggtctattatagcaaa 18236657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 45630316 - 45630275
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaa 165  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  45630316 tacatgtgtgctctttagatttaatttgcccaaaaaataaaa 45630275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 11791471 - 11791361
Alignment:
Q  137 tttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatct 236  Q
    |||| ||||||||||||||||||||||||  | |||| ||||||||||| ||||||||| |||||||||| ||||||| |||||||||||  |||| |||    
T  11791471 tttagatttaatttgcccaaaaaataaaaataggggtctttgtgtccaagtgaaaaggtattgcttgctaaaatagacattcataaaatgaagtgggtct 11791372  T
Q  237 attgtagcaaa 247  Q
    |||||||||||    
T  11791371 attgtagcaaa 11791361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 11792263 - 11792383
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaa 223  Q
    |||||||||| |||||| ||||||||| ||||||||| ||||  |||||||||||||||||| || |||||||| |||||||| ||||||||||||||||    
T  11792263 tacatttgtgtcctttagatttaatttacccaaaaaacaaaaataagggtttttgtgtccaagtgtaaaggtgtagcttgctaaaatagaccttcataaa 11792362  T
Q  224 atggtgtggatctattgtagc 244  Q
     ||  |||  |||||||||||    
T  11792363 ctgaagtgcgtctattgtagc 11792383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 34836873 - 34836773
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaa 223  Q
    |||||||||||||||||  |||||||||| ||||||| ||||  ||||||||||| |||||| ||||||| ||||| ||| || ||||||||||||||||    
T  34836873 tacatttgtgccctttagttttaatttgctcaaaaaacaaaaataagggtttttgggtccaattgaaaagatgttggttgataaaatagaccttcataaa 34836774  T
Q  224 a 224  Q
    |    
T  34836773 a 34836773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 34837916 - 34838039
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaa 223  Q
    |||||||||||||||||  ||||||||||  |||||| ||||  ||| |||||||||||||| |||||| |||||| |||||| |||| | |||||||||    
T  34837916 tacatttgtgccctttagttttaatttgctaaaaaaacaaaaataagtgtttttgtgtccaattgaaaaagtgttggttgctaaaataaaacttcataaa 34838015  T
Q  224 atggtgtggatctattgtagcaaa 247  Q
    |  | |||| ||||||||||||||    
T  34838016 aatgagtgggtctattgtagcaaa 34838039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 34978467 - 34978367
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaa 223  Q
    ||||||||||||| |||  |||||||||| ||||||| ||||  ||||||||||  |||||| ||||||||||||| ||| || ||||||||||||||||    
T  34978467 tacatttgtgccccttagttttaatttgctcaaaaaacaaaaataagggtttttaggtccaattgaaaaggtgttggttgataaaatagaccttcataaa 34978368  T
Q  224 a 224  Q
    |    
T  34978367 a 34978367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 247
Target Start/End: Complemental strand, 20627649 - 20627527
Alignment:
Q  125 acatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaa 224  Q
    ||||||||| ||||||  |||| ||| |||| |||| |||| ||||||| ||||||||||| |||||||||||||  ||||| ||||||| ||||| |||    
T  20627649 acatttgtgacctttagttttagttttcccataaaacaaaaacaagggtctttgtgtccaagtgaaaaggtgttgggtgctaaaatagactttcatgaaa 20627550  T
Q  225 tggtgtggatctattgtagcaaa 247  Q
      | |||| ||||||||||||||    
T  20627549 atgagtgggtctattgtagcaaa 20627527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 125 - 247
Target Start/End: Complemental strand, 31135292 - 31135170
Alignment:
Q  125 acatttgtgccctttacatttaatttgcccaaaaaataaaagcaaggg-tttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaa 223  Q
    ||||||||||||||||  |||  ||| ||||||||| |||| |||||| ||||| ||||||| ||||||||||||| |||||| ||||||||||||| ||    
T  31135292 acatttgtgccctttagtttttgttttcccaaaaaaaaaaa-caagggctttttatgtccaagtgaaaaggtgttggttgctaaaatagaccttcatgaa 31135194  T
Q  224 atggtgtggatctattgtagcaaa 247  Q
    |  | || | ||||||||||||||    
T  31135193 aatgagttggtctattgtagcaaa 31135170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 31135892 - 31135966
Alignment:
Q  173 tttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||||| ||||||||||||| |||||| |||| |||||||| |||| |  ||||||||||||||||||    
T  31135892 tttttgtgtccaagtgaaaaggtgttggttgctaaaatacaccttcatgaaattgaatggatctattgtagcaaa 31135966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 12921863 - 12921930
Alignment:
Q  180 gtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||||||||| ||  ||||| |||||||||||||||||||  |||| ||||||||||||||    
T  12921863 gtccaaatgaaaaggtgctggatgctaaaatagaccttcataaaatgaagtgggtctattgtagcaaa 12921930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 31914617 - 31914523
Alignment:
Q  153 ccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    |||||||| ||||  |||||| ||||||||||| |||||||||| || |||||| |||||| |||||| |||  | |||| ||||||||||||||    
T  31914617 ccaaaaaacaaaaataagggtctttgtgtccaagtgaaaaggtgctggttgctaaaatagatcttcatgaaaatgagtgggtctattgtagcaaa 31914523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 12206836 - 12206764
Alignment:
Q  175 tttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||| ||||||||||  | |||||| |||||||||||||||||  | |||| ||||||||||||||    
T  12206836 tttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcataaaaatgagtgggtctattgtagcaaa 12206764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 23089215 - 23089338
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaa 223  Q
    |||||||||  ||||||  ||| ||| | |||||||| ||||  |||||| ||  ||||||| ||||||||||||| |||||| ||||||||| ||| ||    
T  23089215 tacatttgtatcctttagttttgattggtccaaaaaacaaaaataagggtattcttgtccaagtgaaaaggtgttggttgctaaaatagacctacatgaa 23089314  T
Q  224 atggtgtggatctattgtagcaaa 247  Q
    |  | |||| ||||||||||||||    
T  23089315 aatgagtgggtctattgtagcaaa 23089338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 12921205 - 12921129
Alignment:
Q  170 gggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||| ||||||||||||||||| ||  ||||| |||| ||||||||||||||  |||  ||||||||||||||    
T  12921205 gggtttttg-gtccaaatgaaaaggtgctggatgctaaaataaaccttcataaaatgaagtgcgtctattgtagcaaa 12921129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 6311784 - 6311852
Alignment:
Q  179 tgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||||||||||   ||||||| ||||||||||||| |||||  |||| |||||| |||||||    
T  6311784 tgtccaaatgaaaaggtgcaccttgctaaaatagaccttcatgaaatgaggtgggtctattatagcaaa 6311852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 42523269 - 42523225
Alignment:
Q  180 gtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaa 224  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||    
T  42523269 gtccaaatgaaaaggtgttacttgctaaaagagaccttcataaaa 42523225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 20628289 - 20628383
Alignment:
Q  129 ttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaa 224  Q
    ||||||||||||  |||||||  | ||||||| |||| || ||  |||| ||||| | ||||||||||||||||| || |||||||||||||||||    
T  20628289 ttgtgccctttagttttaattgtctcaaaaaacaaaaacatggtctttt-tgtcctagtgaaaaggtgttgcttggtaaaatagaccttcataaaa 20628383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 23088399 - 23088276
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaa 223  Q
    ||||||| || ||||||  ||| ||| | |||||||| ||||  |||||| ||  |||| || ||| ||||||||| |||||| ||||||||||||| ||    
T  23088399 tacatttttgtcctttagttttgattggtccaaaaaacaaaaataagggtattcttgtcgaagtgagaaggtgttggttgctaaaatagaccttcatgaa 23088300  T
Q  224 atggtgtggatctattgtagcaaa 247  Q
    |  | |||| ||||||||||||||    
T  23088299 aatgagtgggtctattgtagcaaa 23088276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 48314430 - 48314367
Alignment:
Q  184 aaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||||||||||||||| ||||||| ||||| |||  | |||| ||||||| ||||||    
T  48314430 aaatgaaaaggtgttgcttgctaaaatagactttcatgaaaatgagtgggtctattgcagcaaa 48314367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 6310887 - 6310823
Alignment:
Q  179 tgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtag 243  Q
    ||||||| ||||||||||   ||| ||| ||||||||||||| |||||  |||||||||||||||    
T  6310887 tgtccaagtgaaaaggtgcaccttcctaaaatagaccttcatgaaatgaggtggatctattgtag 6310823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 12210914 - 12210986
Alignment:
Q  175 tttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||| ||||||||||  | |||||| ||||||||||||| |||  | || | ||||||||||||||    
T  12210914 tttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagttggtctattgtagcaaa 12210986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 31689249 - 31689177
Alignment:
Q  175 tttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||| | ||||||||||  | |||||| ||||||||||||| |||  | |||| ||||||||||||||    
T  31689249 tttgtgtccgagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaa 31689177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 31908357 - 31908421
Alignment:
Q  183 caaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    |||| |||||||||   ||||||| |||||||||||||||||  | |||| ||||||||||||||    
T  31908357 caaaggaaaaggtgcaacttgctaaaatagaccttcataaaaatgagtgggtctattgtagcaaa 31908421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 54501587 - 54501687
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaa 223  Q
    |||||||||| |||||   ||||||| | |||||||| |||| || | || ||| ||||||| | |||| |||||| |||||| | ||||||||||||||    
T  54501587 tacatttgtgtcctttgattttaattggtccaaaaaacaaaaacatgagtctttttgtccaagtaaaaatgtgttggttgctaaattagaccttcataaa 54501686  T
Q  224 a 224  Q
    |    
T  54501687 a 54501687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 125 - 247
Target Start/End: Original strand, 30971954 - 30972074
Alignment:
Q  125 acatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaa 224  Q
    ||||||| ||||||||  |||| |||  |||||||| |||  ||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||    
T  30971954 acatttgagccctttaattttagtttttccaaaaaaaaaa--caagggtttttgtgtccaaatgaaaaggtgttggttgctaaaatagaccttcatgaaa 30972051  T
Q  225 tggtgtggatctattgtagcaaa 247  Q
    | | |||| ||||||||||||||    
T  30972052 ttgagtgggtctattgtagcaaa 30972074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 1636971 - 1636848
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaa 223  Q
    |||||||| |||| |||  |||| |||  |||||||| |||| ||||||| ||||||||||||||||||| ||||| |||| | |||||| |||||| ||    
T  1636971 tacatttgcgccccttagttttagtttttccaaaaaacaaaaacaagggtctttgtgtccaaatgaaaagatgttggttgcaaaaatagatcttcatgaa 1636872  T
Q  224 atggtgtggatctattgtagcaaa 247  Q
    |  | ||| |||||||||||||||    
T  1636871 aatgagtgaatctattgtagcaaa 1636848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 28965898 - 28965798
Alignment:
Q  124 tacatttgtgccctttacatttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaa 223  Q
    |||||||||||||||||  |||||||||| ||||||| ||||  ||||||||||  |||||| ||||||||||||  ||| || |||| || ||||||||    
T  28965898 tacatttgtgccctttagttttaatttgctcaaaaaacaaaaataagggtttttaggtccaattgaaaaggtgtttgttgataaaataaactttcataaa 28965799  T
Q  224 a 224  Q
    |    
T  28965798 a 28965798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 30971362 - 30971285
Alignment:
Q  170 gggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    |||||||||||||||| |||||| ||| || |||||| ||||||||||||| |||  | |||| ||||||||||||||    
T  30971362 gggtttttgtgtccaagtgaaaaagtgatggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaa 30971285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 247
Target Start/End: Original strand, 5152417 - 5152521
Alignment:
Q  143 tttaatttgcccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgta 242  Q
    |||| ||| ||||||||| |||| || || | |||  |||||||||||||||||   ||||||| |||||||||||||||||  | | || |||||||||    
T  5152417 tttagttttcccaaaaaacaaaaacatggatcttttggtccaaatgaaaaggtgccacttgctaaaatagaccttcataaaaatgagcgggtctattgta 5152516  T
Q  243 gcaaa 247  Q
    |||||    
T  5152517 gcaaa 5152521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 16106020 - 16106092
Alignment:
Q  175 tttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||| ||||||||||  | |||||| ||||||||||||| |||  | |||| ||||||||||||||    
T  16106020 tttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaa 16106092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 16113260 - 16113332
Alignment:
Q  175 tttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||| ||||||||||  | |||||| ||||||||||||| |||  | |||| ||||||||||||||    
T  16113260 tttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaa 16113332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 1637573 - 1637619
Alignment:
Q  180 gtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatg 226  Q
    ||||||||||||||||| |  |||||| |||||||||||||||||||    
T  1637573 gtccaaatgaaaaggtgctaattgctaaaatagaccttcataaaatg 1637619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 23220066 - 23220008
Alignment:
Q  189 aaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||  |||||||| |||||||||||||||||  | |||| ||||||||||||||    
T  23220066 aaaaggtgcagcttgctaaaatagaccttcataaaaaagggtgggtctattgtagcaaa 23220008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 32744070 - 32744033
Alignment:
Q  187 tgaaaaggtgttgcttgctagaatagaccttcataaaa 224  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  32744070 tgaaaaggtgttggttgctaaaatagaccttcataaaa 32744033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 16101595 - 16101523
Alignment:
Q  175 tttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||| ||||||||||  | |||||| ||||||||||||| |||  | |||  ||||||||||||||    
T  16101595 tttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgtgtctattgtagcaaa 16101523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 33471257 - 33471165
Alignment:
Q  155 aaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| |||  |  ||| ||||||||||||||    
T  33471257 aaaaaacaaaaacaagggtctttgtgtccaaatgaaaaggtgttggttgctaaaatagaccttcatgaaaatgaatgggtctattgtagcaaa 33471165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 33471854 - 33471921
Alignment:
Q  180 gtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||||||||| |  |||||| |||||||||||||||||||  |||| ||||||||||||||    
T  33471854 gtccaaatgaaaaggtgctagttgctaaaatagaccttcataaaatgaagtgggtctattgtagcaaa 33471921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 4301027 - 4300933
Alignment:
Q  153 ccaaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||||| |||||| |||||||||||| ||||||||||||| |||||| |||||| |||||| |||    |||| ||||||||||||||    
T  4301027 ccaaaaaataaaaacaaggggttttgtgtccaagtgaaaaggtgttggttgctaaaatagatcttcatgaaaataagtgggtctattgtagcaaa 4300933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 54285811 - 54285883
Alignment:
Q  175 tttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||||||||||||||| | |||||| |||||||||||||||||  | |||| ||||||||||||||    
T  54285811 tttgtgtccaaatgaaaaggtgtaggttgctaaaatagaccttcataaaaatgagtgggtctattgtagcaaa 54285883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 40929858 - 40929925
Alignment:
Q  180 gtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    |||||||||||||||||||| |||||| |||| ||||||||||||  | |||| ||||||||||||||    
T  40929858 gtccaaatgaaaaggtgttggttgctaaaataaaccttcataaaaatgagtgggtctattgtagcaaa 40929925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 2841198 - 2841274
Alignment:
Q  170 gggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||| |||||||||||||||||||    |||| |||||||||||||||||||  |||| ||||||||||||||    
T  2841198 gggtttttg-gtccaaatgaaaaggtgtttggcgctaaaatagaccttcataaaatgaagtgggtctattgtagcaaa 2841274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 27473930 - 27473857
Alignment:
Q  174 ttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||||| |||||||||   ||||||| |||||||||||| ||||| | |||| ||||||||||||||    
T  27473930 ttttgtgtccaaaggaaaaggtgcatcttgctaaaatagaccttcacaaaatagagtgggtctattgtagcaaa 27473857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 14460134 - 14460201
Alignment:
Q  180 gtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||||||||| |  |||||| ||||||||||||||||||   || ||||||||||||||||    
T  14460134 gtccaaatgaaaaggtgctaattgctaaaatagaccttcataaaataaagttgatctattgtagcaaa 14460201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 27474875 - 27474948
Alignment:
Q  174 ttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    |||||||||||||  |||||||||  ||||||| ||||||| |||| ||||| | |||| ||||||||||||||    
T  27474875 ttttgtgtccaaagaaaaaggtgtatcttgctaaaatagacgttcacaaaatagagtgggtctattgtagcaaa 27474948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 33148274 - 33148367
Alignment:
Q  154 caaaaaataaaagcaagggtttttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||| |||| || |||  ||| ||||||| ||||||||||   ||||||| |||||||||||||||||||  |||| | ||||||||||||    
T  33148274 caaaaaacaaaaacatgggcatttatgtccaagtgaaaaggtgcaccttgctaaaatagaccttcataaaatgaggtgggtttattgtagcaaa 33148367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 27317475 - 27317543
Alignment:
Q  179 tgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||| |||||||||||||||||||||| |||| |||||||| |||  | | || ||||||||||||||    
T  27317475 tgtcctaatgaaaaggtgttgcttgctaaaataaaccttcatgaaaatgagcgggtctattgtagcaaa 27317543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 27359843 - 27359903
Alignment:
Q  187 tgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||||||||| |||||| ||||||||||||| |||  | |||| ||||||||||||||    
T  27359843 tgaaaaggtgttgtttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaa 27359903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 17619140 - 17619210
Alignment:
Q  175 tttgtgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagca 245  Q
    ||||||||||| |||||||||  || |||||| ||||||||||||| |||  | |||| ||||||||||||    
T  17619140 tttgtgtccaagtgaaaaggtactggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagca 17619210  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 28422853 - 28422913
Alignment:
Q  187 tgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    |||||||||| || |||||| ||||||| |||||||||  | |||| ||||||||||||||    
T  28422853 tgaaaaggtgatggttgctaaaatagactttcataaaaatgagtgggtctattgtagcaaa 28422913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 33147400 - 33147332
Alignment:
Q  179 tgtccaaatgaaaaggtgttgcttgctagaatagaccttcataaaatggtgtggatctattgtagcaaa 247  Q
    ||||||| ||||||||||   ||||||| |||||| |||||| |||||  |||| ||||||||||||||    
T  33147400 tgtccaagtgaaaaggtgcatcttgctaaaatagatcttcatgaaatgaggtgggtctattgtagcaaa 33147332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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