View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_low_7 (Length: 478)
Name: NF3564_low_7
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 3659788 - 3659353
Alignment:
| Q |
1 |
aaatgatgaccaaggcgaggttttggagaatagaaagtttgcagttgtagatgttgtggactcttatcagggtgttgaagatgacgaggaagtgctggtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3659788 |
aaatgatgaccaaggcgaggttttggagaatagaaagtttgcagttgtagatgttgtggactcttctcagggtgttgaagatgacgaggaagtgctggtg |
3659689 |
T |
|
| Q |
101 |
gaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttctctgctccattgc |
200 |
Q |
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| T |
3659688 |
ggggacagtggaggatcaacacgtagtagcgatgacggagatatagtg---------------gcacaccaagagaagattctgttctctgctccattgc |
3659604 |
T |
|
| Q |
201 |
cacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggctttgtctaccct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3659603 |
cacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcattacattatattcatgtaaggctttgtctaccct |
3659504 |
T |
|
| Q |
301 |
ttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaattggcatatgatt |
400 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
3659503 |
ttgatttgtaatgtttgattggattctaggacaatttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaattggcatttggtt |
3659404 |
T |
|
| Q |
401 |
cataaatggatttgttatgttccactttaattggcatttagataattgtggt |
452 |
Q |
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| T |
3659403 |
-ataaatggatttgttatgttccacttcaattggaatttagataagtgtggt |
3659353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 89 - 433
Target Start/End: Complemental strand, 3653449 - 3653106
Alignment:
| Q |
89 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttct |
188 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3653449 |
gaagttctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagtagtttcaagcacaccaagagaagattctgttct |
3653350 |
T |
|
| Q |
189 |
ctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggc |
288 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3653349 |
ctgctccactgccgcttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaacttttgacgtgaaatgtcgttacattatattcatgtaaggt |
3653250 |
T |
|
| Q |
289 |
tttgtctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaat |
388 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
3653249 |
tttgtttaccctttgatttgtaatgtttgat--tattctaggagaatttgactggacttagattgtttggtaactggtagatctcatctgcgtgtctaat |
3653152 |
T |
|
| Q |
389 |
tggcatatgattc-ataaatggatttgttatgttccactttaattg |
433 |
Q |
| |
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|||||| || ||| |||||||||||||||||||||||||| ||||| |
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| T |
3653151 |
tggcatttggttctataaatggatttgttatgttccacttcaattg |
3653106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 89 - 346
Target Start/End: Complemental strand, 3657452 - 3657199
Alignment:
| Q |
89 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttct |
188 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| ||||| || | | | |||||| | |||||||||||||||| | ||| || |||||| ||||||||| |
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| T |
3657452 |
gaagtgctggtggaggacggtgaaggatcaacgcgtagcagtggttatggagattgactgaaagagcagtttcaggtacatcatgagaagcttctgttct |
3657353 |
T |
|
| Q |
189 |
ctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggc |
288 |
Q |
| |
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| ||| ||||||| ||||||||||| |||| || ||||||||||| || ||||| | |||| || |||||||| | | |||| |||| |||||| |
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| T |
3657352 |
cagctgcattgccgcttaaaatggagagca----agacttgaagagtaatggtgtgaacaatttgtcgcgaaatgtcataaaatta---tcatttaaggc |
3657260 |
T |
|
| Q |
289 |
tttgt---ctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggact |
346 |
Q |
| |
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||||| | | ||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
3657259 |
tttgtttgtttacatttgatttgtaatgtttgactgtattctaggagaacttgattggact |
3657199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 108 - 249
Target Start/End: Complemental strand, 3649322 - 3649181
Alignment:
| Q |
108 |
gtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttctctgctccattgccacttaa |
207 |
Q |
| |
|
||||||||||||| |||||||| | | | |||||| ||||||||| |||||||| | ||| || |||||| ||||| |||| | || |||||||||||| |
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| T |
3649322 |
gtggaggatcaacgcgtagtagtggttatggagattgagtgaaagatcagtttcaggtacatcatgagaagcttctgctctcagttctattgccacttaa |
3649223 |
T |
|
| Q |
208 |
aatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
249 |
Q |
| |
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|||||||||||||||||||||||||||||| | |||||||| |
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| T |
3649222 |
gatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
3649181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 36164634 - 36164576
Alignment:
| Q |
191 |
gctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
249 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||| |
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| T |
36164634 |
gctccattgccgcttaagatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
36164576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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