View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_low_8 (Length: 475)
Name: NF3564_low_8
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Original strand, 11368139 - 11368589
Alignment:
| Q |
20 |
gttttctcccatcattttcaggtacttgataaccaattgttgcttcaattttttgtttccttgcaaaaaacacatttcttctttgttcttctccactacc |
119 |
Q |
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| T |
11368139 |
gttttctcccatcattttcaggtatttgataaccaattgttgcttcaattttttgtttccttgcaaaaaacacatttcttctttgttcttctccactacc |
11368238 |
T |
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| Q |
120 |
atacttctgaagttcagccaatgaaatttgcaactcaaaatcatgcaacatatttgattctgtttcaacatccacaggagcaatagtatcagtcaacttt |
219 |
Q |
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| T |
11368239 |
aaacttctgaagttcagccaatgaaatttgcaactcaaaatcatgcaacatatttgattctgtttcaacatccacaggagcaatagtatcagtcaacttt |
11368338 |
T |
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| Q |
220 |
cctgcattagcagcttctttcaatgattcttttgtagcctcgacatcgactattttatcgtccttttcttctttac---cgtcttctttactctctttac |
316 |
Q |
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| T |
11368339 |
cctgcattagcagcttctttcaatgattcttttgtagcctcgacatcgactattttatcgtccttttcttctttaccatcttcttctttactctctttac |
11368438 |
T |
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| Q |
317 |
cttgatcttcattgtagtagtttcttgaccttgtccatcttctcgaaaaaggatcgtacccttcctctcccgctttcaaattcgcattcatcatatttct |
416 |
Q |
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| T |
11368439 |
cttgatcttcattgtagtagtttcttgaccttgtccaccttctagagaaaggatcatacccttcctctcccgctttcaaattcgcattcatcatatttct |
11368538 |
T |
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| Q |
417 |
atgctcagacaagtttttataattctcaacgcgattctttctgttcatctc |
467 |
Q |
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| T |
11368539 |
atgctcggacaggtttttataattctcaacacgattctttctgttcatctc |
11368589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 11365118 - 11365205
Alignment:
| Q |
20 |
gttttctcccatcattttcaggtacttgataaccaattgttgcttcaattttttgtttccttgc-aaaaaacacatttcttctttgtt |
106 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
11365118 |
gttttttcccatcattttgaggtacttgataaccaattgttgcttcaattttttgtttcctagcaaaaaaacacatttcttctttgtt |
11365205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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