View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3565_high_11 (Length: 257)
Name: NF3565_high_11
Description: NF3565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3565_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 42464925 - 42465179
Alignment:
| Q |
7 |
tcgaagaatataaatgcctagaatctagactagctaaaaaccactttgaggtatttaagttcaatttcatggacttctatgtactttttgaatatctaaa |
106 |
Q |
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| T |
42464925 |
tcgaaaaatataaatgcctagactctagactagctaaaaaccactttgaggtatttaagttcaatttcatggacttctatgtactttttgaatatctaaa |
42465024 |
T |
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| Q |
107 |
ttcagctagtgaaaatgtttaattatataattaacaacgtgcagctgtgaaagaattgataatcctct----ggatatatcatatgattaaacatgttgg |
202 |
Q |
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| T |
42465025 |
ttcagctagtgaaaatgtttaattatataattaacaacgtgcagctgtgaaagaattgttaatcctctgagaggatatatcatatgattaaacatgttgg |
42465124 |
T |
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| Q |
203 |
cacgactttatattttgtacagtaacaccattttctttacttatttaagaaatac |
257 |
Q |
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| T |
42465125 |
cacgactttatattttgtacagtaacaccattttctttacttatttaagaaatac |
42465179 |
T |
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