View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3565_high_17 (Length: 241)
Name: NF3565_high_17
Description: NF3565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3565_high_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 33432355 - 33432494
Alignment:
| Q |
84 |
gtattttgattataaaaaataatgttttacttggattaattagtggaattaattaatttcatctattttaattaatttgtttctgatgatcatgtaggaa |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33432355 |
gtattttgattataaaaaataatgttttacttggattaattagtggaattaattaatttcatctattttaattaatttgtttctcatgatcatgtaggaa |
33432454 |
T |
|
| Q |
184 |
gatccaagaatacaaacaccatattcatcaataccatcat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33432455 |
gatccaagaatacaaacaccatattcatcaataccatcat |
33432494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 33432274 - 33432323
Alignment:
| Q |
1 |
atgtaagcttcttaaattctctcttcttttgctcaaatcaaactactcta |
50 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33432274 |
atgtaagcttcttaaattctctcttcttttgctcaaatcaaaccactcta |
33432323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University