View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3565_high_2 (Length: 455)

Name: NF3565_high_2
Description: NF3565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3565_high_2
NF3565_high_2
[»] chr2 (28 HSPs)
chr2 (9-335)||(28438566-28438892)
chr2 (335-448)||(5031995-5032108)
chr2 (336-445)||(34134658-34134767)
chr2 (336-445)||(25086396-25086504)
chr2 (333-437)||(23352792-23352895)
chr2 (342-440)||(2842771-2842872)
chr2 (336-448)||(2221065-2221176)
chr2 (341-445)||(5054683-5054786)
chr2 (334-445)||(15269936-15270046)
chr2 (335-404)||(1907650-1907719)
chr2 (335-445)||(34119539-34119648)
chr2 (332-402)||(44050132-44050202)
chr2 (336-445)||(42866825-42866933)
chr2 (341-437)||(22525889-22525984)
chr2 (342-445)||(9377531-9377633)
chr2 (342-445)||(29712053-29712154)
chr2 (366-445)||(40936982-40937060)
chr2 (333-403)||(31296654-31296724)
chr2 (340-402)||(44977391-44977453)
chr2 (388-437)||(6895977-6896026)
chr2 (40-101)||(13518652-13518713)
chr2 (341-445)||(14233611-14233715)
chr2 (340-445)||(17394967-17395072)
chr2 (388-445)||(29361095-29361152)
chr2 (341-406)||(44254715-44254779)
chr2 (366-406)||(5200144-5200183)
chr2 (341-405)||(9634329-9634392)
chr2 (341-445)||(36211953-36212056)
[»] chr6 (18 HSPs)
chr6 (333-440)||(34570479-34570586)
chr6 (19-159)||(11005066-11005205)
chr6 (22-139)||(24322427-24322544)
chr6 (335-402)||(33656888-33656955)
chr6 (336-445)||(13143270-13143378)
chr6 (334-445)||(32459402-32459512)
chr6 (335-445)||(18141188-18141297)
chr6 (336-445)||(868840-868948)
chr6 (344-445)||(26832721-26832821)
chr6 (341-445)||(1369435-1369538)
chr6 (333-433)||(6531065-6531164)
chr6 (334-445)||(35213447-35213557)
chr6 (341-403)||(31749482-31749543)
chr6 (336-401)||(3832582-3832646)
chr6 (335-403)||(11547416-11547483)
chr6 (15-144)||(26271054-26271183)
chr6 (334-439)||(31883189-31883293)
chr6 (342-445)||(2688958-2689061)
[»] chr5 (19 HSPs)
chr5 (334-445)||(18695393-18695504)
chr5 (336-445)||(6940037-6940146)
chr5 (334-445)||(9939317-9939428)
chr5 (15-138)||(19963974-19964097)
chr5 (334-445)||(41175592-41175702)
chr5 (341-445)||(15952938-15953041)
chr5 (367-440)||(10865398-10865471)
chr5 (333-445)||(10649510-10649621)
chr5 (15-135)||(27248057-27248177)
chr5 (336-445)||(8675321-8675429)
chr5 (10-138)||(15434918-15435046)
chr5 (336-437)||(36321684-36321785)
chr5 (341-406)||(2224905-2224969)
chr5 (340-406)||(24859246-24859312)
chr5 (341-435)||(38704090-38704183)
chr5 (335-445)||(43441813-43441922)
chr5 (388-445)||(9226375-9226432)
chr5 (388-445)||(20770206-20770263)
chr5 (333-445)||(189588-189699)
[»] chr4 (37 HSPs)
chr4 (333-440)||(3078792-3078899)
chr4 (336-445)||(42815479-42815588)
chr4 (342-445)||(37514025-37514128)
chr4 (8-139)||(17263254-17263384)
chr4 (15-131)||(44810502-44810618)
chr4 (333-445)||(12138928-12139039)
chr4 (334-440)||(1815887-1815992)
chr4 (335-439)||(50831642-50831745)
chr4 (333-405)||(32696673-32696745)
chr4 (341-445)||(46405867-46405970)
chr4 (344-440)||(52895308-52895404)
chr4 (345-440)||(13104279-13104373)
chr4 (341-440)||(56271440-56271538)
chr4 (335-445)||(22819724-22819833)
chr4 (340-409)||(1140720-1140789)
chr4 (36-137)||(12880060-12880161)
chr4 (334-406)||(54669470-54669541)
chr4 (367-439)||(10474031-10474102)
chr4 (336-440)||(13086102-13086205)
chr4 (343-403)||(23662211-23662271)
chr4 (15-103)||(28571771-28571859)
chr4 (333-397)||(33423461-33423525)
chr4 (91-135)||(48747466-48747510)
chr4 (335-402)||(21025719-21025786)
chr4 (335-445)||(2999187-2999296)
chr4 (332-402)||(35936083-35936153)
chr4 (340-434)||(42491160-42491253)
chr4 (333-379)||(52895397-52895443)
chr4 (17-138)||(18464168-18464289)
chr4 (333-402)||(27371258-27371327)
chr4 (388-445)||(28458316-28458373)
chr4 (388-445)||(38338861-38338918)
chr4 (340-445)||(54802567-54802672)
chr4 (341-406)||(55601601-55601665)
chr4 (333-405)||(17683456-17683527)
chr4 (366-406)||(31076167-31076206)
chr4 (333-445)||(51887738-51887848)
[»] chr8 (14 HSPs)
chr8 (336-445)||(10644689-10644798)
chr8 (9-137)||(10647298-10647427)
chr8 (336-445)||(30439394-30439502)
chr8 (333-445)||(6445252-6445366)
chr8 (334-445)||(36885374-36885484)
chr8 (334-445)||(24795323-24795434)
chr8 (333-445)||(29440407-29440519)
chr8 (15-78)||(14625879-14625942)
chr8 (333-439)||(13106561-13106666)
chr8 (335-437)||(22960305-22960407)
chr8 (342-403)||(888150-888211)
chr8 (336-445)||(31597023-31597131)
chr8 (340-381)||(33958007-33958048)
chr8 (340-404)||(5740677-5740741)
[»] chr3 (17 HSPs)
chr3 (333-445)||(29573240-29573352)
chr3 (15-145)||(32197680-32197809)
chr3 (336-440)||(27718673-27718777)
chr3 (340-445)||(45754713-45754819)
chr3 (332-445)||(51465798-51465910)
chr3 (66-138)||(10942367-10942439)
chr3 (336-445)||(49761382-49761490)
chr3 (334-437)||(6999253-6999355)
chr3 (336-437)||(24095294-24095394)
chr3 (388-445)||(26672473-26672530)
chr3 (335-409)||(9158759-9158833)
chr3 (334-406)||(35201426-35201497)
chr3 (334-402)||(9311158-9311226)
chr3 (341-445)||(21196199-21196302)
chr3 (16-88)||(27820497-27820569)
chr3 (340-428)||(29373735-29373823)
chr3 (333-401)||(46965985-46966053)
[»] chr7 (20 HSPs)
chr7 (346-445)||(46829554-46829653)
chr7 (336-445)||(1471178-1471287)
chr7 (334-437)||(33775022-33775125)
chr7 (335-445)||(7817711-7817820)
chr7 (340-439)||(10700078-10700175)
chr7 (19-124)||(9788744-9788849)
chr7 (341-445)||(3062405-3062508)
chr7 (335-445)||(4225827-4225937)
chr7 (335-433)||(41458683-41458780)
chr7 (11-79)||(24234920-24234988)
chr7 (333-403)||(19785964-19786033)
chr7 (366-445)||(42926214-42926292)
chr7 (333-406)||(26041205-26041277)
chr7 (335-445)||(28036819-28036928)
chr7 (336-402)||(35600789-35600855)
chr7 (340-445)||(6109862-6109967)
chr7 (388-445)||(35588830-35588887)
chr7 (341-445)||(10055525-10055628)
chr7 (342-406)||(15565025-15565089)
chr7 (367-407)||(47078171-47078210)
[»] chr1 (32 HSPs)
chr1 (336-445)||(46281511-46281620)
chr1 (336-445)||(35136919-35137027)
chr1 (332-406)||(51436654-51436728)
chr1 (336-445)||(47721484-47721592)
chr1 (336-445)||(47728476-47728584)
chr1 (336-445)||(48220032-48220140)
chr1 (341-445)||(33358051-33358154)
chr1 (12-131)||(25784284-25784403)
chr1 (91-140)||(36976830-36976880)
chr1 (340-406)||(41507086-41507151)
chr1 (335-445)||(50328028-50328137)
chr1 (335-445)||(50775043-50775152)
chr1 (335-445)||(50881997-50882106)
chr1 (336-445)||(8200150-8200258)
chr1 (336-445)||(10889934-10890042)
chr1 (342-435)||(43769703-43769796)
chr1 (347-440)||(45417852-45417944)
chr1 (336-445)||(48326043-48326150)
chr1 (335-439)||(11597718-11597821)
chr1 (333-445)||(40316829-40316940)
chr1 (333-445)||(48624951-48625061)
chr1 (334-445)||(36577298-36577408)
chr1 (340-406)||(4629640-4629706)
chr1 (335-445)||(50824816-50824925)
chr1 (336-445)||(13489737-13489845)
chr1 (388-445)||(18336221-18336278)
chr1 (336-445)||(52362557-52362665)
chr1 (341-401)||(2211085-2211144)
chr1 (331-403)||(4514337-4514408)
chr1 (366-406)||(47214321-47214360)
chr1 (366-406)||(51286286-51286325)
chr1 (340-404)||(51571238-51571302)
[»] scaffold0532 (1 HSPs)
scaffold0532 (333-445)||(11039-11150)
[»] scaffold0136 (1 HSPs)
scaffold0136 (333-445)||(38500-38611)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 28438892 - 28438566
Alignment:
Q  9 agcaaaggtatgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaattacatat 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28438892 agcaaagatatgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaattacatac 28438793  T
Q  109 gagagagtaagtccccgccttaataactatccgaccatttacggaatcctataggattgacgaccttgtacccgtataacctttagaatgattgaggagt 208  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28438792 gagagagtaagtccctgccttaataactatccgaccatttacgaaatcctataggattgacgaccttgtacccgtatgacctttagaatgattgaggagt 28438693  T
Q  209 acttgaaatatggaaggacgctaaattccatcaaaataaccacttaaacgagacttctcatttaaccttgtcatgtacaaccaatttggagaaaagatat 308  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28438692 acttgacatatggaaggacgctaaattccatcagaataaccacttaaacgagacttctcatttaaccttgtcatgtacaaccaatttggagaaaagctat 28438593  T
Q  309 ataaacaaggtgatgcctatagacaaa 335  Q
    |||||||||||||||||||||||||||    
T  28438592 ataaacaaggtgatgcctatagacaaa 28438566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 335 - 448
Target Start/End: Complemental strand, 5032108 - 5031995
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5032108 agagatgtgttatttgaacaaccttttgatagacaacttatttgacaaccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagtaatag 5032009  T
Q  435 agagatgaagtgaa 448  Q
    |||||| |||||||    
T  5032008 agagataaagtgaa 5031995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 34134658 - 34134767
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| || |||| |||||  ||| || ||||||||||||||    
T  34134658 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaaggaagagtaggttttgacacgaaaatcaaagcaataga 34134757  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  34134758 gagataaagt 34134767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 336 - 445
Target Start/End: Complemental strand, 25086504 - 25086396
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||||||||||||||||||| | |||||| |||||||||||||||| ||||||| ||| |||| ||||||| || || | ||||| || ||||||||| |    
T  25086504 gaggtgtgttatttgaacaa-catttgattgacaacttatttgacaaccataaaattataaagtaaaagtatgtattggaacaaaaataaaagcaataaa 25086406  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  25086405 gagataaagt 25086396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 437
Target Start/End: Original strand, 23352792 - 23352895
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaat 432  Q
    ||||||| ||||||||||||||| | |||| | ||||||||||  |||| |||||| ||||||||||||||||| || || |||| || | |||||||||    
T  23352792 aaagaggagtgttatttgaacaaccatttggttgacaacttatgggacaaccataa-tttacaaagaaaaagtatgtatttgcacgaaaaccaaagcaat 23352890  T
Q  433 agaga 437  Q
    |||||    
T  23352891 agaga 23352895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 440
Target Start/End: Original strand, 2842771 - 2842872
Alignment:
Q  342 tgttatttgaacaatcttttgatagacaacttatttgacagccataaatt---tacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagag 438  Q
    ||||||||||| || | ||||||||||||||||||| ||| |||||||||   || |||||||| ||| ||||| ||||||| ||||  |||||||||||    
T  2842771 tgttatttgaataaccatttgatagacaacttatttaacaaccataaatttaataaaaagaaaatgtaggttttggcacaaaaatcattgcaatagagag 2842870  T
Q  439 at 440  Q
    ||    
T  2842871 at 2842872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 448
Target Start/End: Complemental strand, 2221176 - 2221065
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||||||||||  |||  | |||||||||| ||| | |||||| |||| |||||||||||| || || ||||  | ||||||||||||||    
T  2221176 gaggagtgttatttgaacaataattttgttgacaacttatgtgataaccataa-tttataaagaaaaagtaggtatttgcacggaaatcaaagcaataga 2221078  T
Q  436 gagatgaagtgaa 448  Q
    ||||| |||||||    
T  2221077 gagataaagtgaa 2221065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 445
Target Start/End: Complemental strand, 5054786 - 5054683
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagat 440  Q
    |||||||||||| ||   |||| | |||||||||| ||||| | |||| ||||||||||||||||| || || |||| || |||||||||||||||||||    
T  5054786 gtgttatttgaataactatttggttgacaacttatgtgacaacaataa-tttacaaagaaaaagtaggtatttgcacgaaaatcaaagcaatagagagat 5054688  T
Q  441 gaagt 445  Q
     ||||    
T  5054687 aaagt 5054683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 445
Target Start/End: Complemental strand, 15270046 - 15269936
Alignment:
Q  334 aagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaata 433  Q
    |||||| ||||||||||||||  | |||| | || ||||| | ||| | |||||| ||||||||||||||||| || || |||| || ||||||||||||    
T  15270046 aagaggagtgttatttgaacatccatttggttgataacttttatgataaccataa-tttacaaagaaaaagtaggtatttgcacgaaaatcaaagcaata 15269948  T
Q  434 gagagatgaagt 445  Q
    ||||||| ||||    
T  15269947 gagagataaagt 15269936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 404
Target Start/End: Original strand, 1907650 - 1907719
Alignment:
Q  335 agaggtgtgttatttgaacaatctttt-gatagacaacttatttgacagccataaatttacaaagaaaaag 404  Q
    |||| |||||||||||||||||| ||| ||| |||||||| | ||||| ||||||||||||||||||||||    
T  1907650 agagttgtgttatttgaacaatcatttagat-gacaacttgtatgacaaccataaatttacaaagaaaaag 1907719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 445
Target Start/End: Original strand, 34119539 - 34119648
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    ||||| |||| |||||||||| | |||| | ||||||||||  ||||  ||||| |||||||||||||||||||| ||  ||| || |||||| ||||||    
T  34119539 agaggagtgtaatttgaacaaccatttggttgacaacttatgagacactcataa-tttacaaagaaaaagtaagtattcacacgaaaatcaaaacaatag 34119637  T
Q  435 agagatgaagt 445  Q
    |||||| ||||    
T  34119638 agagataaagt 34119648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 402
Target Start/End: Complemental strand, 44050202 - 44050132
Alignment:
Q  332 caaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaa 402  Q
    |||||||||||||||||||||||| | ||||   |||||||| |  |||| ||||||||||||||||||||    
T  44050202 caaagaggtgtgttatttgaacaaccatttgtgcgacaacttttgagacaaccataaatttacaaagaaaa 44050132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 445
Target Start/End: Complemental strand, 42866933 - 42866825
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||| ||||| | |||||| |||||||||  |||||  ||||| ||||||||||||||||   | || |||| || ||||||||||||||    
T  42866933 gaggagtgttattttaacaaccatttgatcgacaacttacgtgacaatcataa-tttacaaagaaaaagtggatatttgcacgaagatcaaagcaataga 42866835  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  42866834 gagataaagt 42866825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 437
Target Start/End: Original strand, 22525889 - 22525984
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagaga 437  Q
    ||||||||||||||| | |||||| || ||||| |  |||| |||||| ||||||||||||||||| |  || |||| || ||||||||||||||||    
T  22525889 gtgttatttgaacaaccatttgattgataacttttgagacaaccataa-tttacaaagaaaaagtaggcatttgcacgaaaatcaaagcaatagaga 22525984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 445
Target Start/End: Complemental strand, 9377633 - 9377531
Alignment:
Q  342 tgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagatg 441  Q
    |||||||||||||| | |||  | ||||||||||  ||||| ||||| |||||||||||||||||  | || |||| || | |||||||||||||||||     
T  9377633 tgttatttgaacaaccatttagttgacaacttatgagacagtcataa-tttacaaagaaaaagtagatatttgcacgaaaaccaaagcaatagagagata 9377535  T
Q  442 aagt 445  Q
    ||||    
T  9377534 aagt 9377531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 445
Target Start/End: Complemental strand, 29712154 - 29712053
Alignment:
Q  342 tgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagatg 441  Q
    |||||||||||||| | |||| | || ||||||  ||||| |||||| ||||||||||||||||| || || ||| ||| | |||||||||||||||||     
T  29712154 tgttatttgaacaaccatttggttga-aacttacatgacaaccataa-tttacaaagaaaaagtaggtatttgcataaaaaccaaagcaatagagagata 29712057  T
Q  442 aagt 445  Q
    ||||    
T  29712056 aagt 29712053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 40936982 - 40937060
Alignment:
Q  366 gacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagatgaagt 445  Q
    ||||| |||| ||||| |||||| ||||||||||||||||  || || |||| || ||||||||||||||||||| ||||    
T  40936982 gacaatttatgtgacaaccataa-tttacaaagaaaaagtgggtatttgcacgaaaatcaaagcaatagagagataaagt 40937060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 403
Target Start/End: Complemental strand, 31296724 - 31296654
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaa 403  Q
    |||||| |||||||||||||||| | || |   |||||||| | ||||| |||||||||||||||||||||    
T  31296724 aaagagatgtgttatttgaacaaccattagtgtgacaacttttatgacaaccataaatttacaaagaaaaa 31296654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 402
Target Start/End: Original strand, 44977391 - 44977453
Alignment:
Q  340 tgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaa 402  Q
    |||||||||||||||| | |||||  || |||||||  |||| ||||||||||||||||||||    
T  44977391 tgtgttatttgaacaaccatttgaacgaaaacttatgagacaaccataaatttacaaagaaaa 44977453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 437
Target Start/End: Complemental strand, 6896026 - 6895977
Alignment:
Q  388 aatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagaga 437  Q
    |||||||||||||||||||||| || ||||| | |||||| |||||||||    
T  6896026 aatttacaaagaaaaagtaagtatttgcacagaaatcaaaacaatagaga 6895977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 13518652 - 13518713
Alignment:
Q  40 ataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaat 101  Q
    |||||||||| ||||| |||| ||||| ||||||||||| | |||||||| |||| ||||||    
T  13518652 ataggtaaaagtggttcctttagatgataatttaggaatttctactatgtttatgtttcaat 13518713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 445
Target Start/End: Original strand, 14233611 - 14233715
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagt-aagttttagcacaaatatcaaagcaatagagaga 439  Q
    ||||||||||||||| | |||  | |||||||||   |||| |||||| |||||||||||||||| || | || ||||||| | ||||||||||||||||    
T  14233611 gtgttatttgaacaaccattttgttgacaacttacaagacaaccataa-tttacaaagaaaaagttaaatatttgcacaaaaaccaaagcaatagagaga 14233709  T
Q  440 tgaagt 445  Q
    | ||||    
T  14233710 taaagt 14233715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 445
Target Start/End: Original strand, 17394967 - 17395072
Alignment:
Q  340 tgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagaga 439  Q
    ||||||||||||||||  |||||   |||||||||||||||| |||||  |||| |||||||| ||| || ||  ||| || |||||| ||||||| |||    
T  17394967 tgtgttatttgaacaactttttgggtgacaacttatttgacaaccatagttttataaagaaaacgtaggtattgacacgaaaatcaaaacaatagaaaga 17395066  T
Q  440 tgaagt 445  Q
    | ||||    
T  17395067 taaagt 17395072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 445
Target Start/End: Complemental strand, 29361152 - 29361095
Alignment:
Q  388 aatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagatgaagt 445  Q
    |||||| |||||||||||| || || | ||||| ||||||||||||||||||| ||||    
T  29361152 aatttataaagaaaaagtaggtatttgtacaaaaatcaaagcaatagagagataaagt 29361095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 406
Target Start/End: Complemental strand, 44254779 - 44254715
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagta 406  Q
    ||||||||||||||| | |||||| ||||||||||  || | |||| |||||||||||||||||||    
T  44254779 gtgttatttgaacaaccatttgattgacaacttatgggataaccat-aatttacaaagaaaaagta 44254715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 406
Target Start/End: Original strand, 5200144 - 5200183
Alignment:
Q  366 gacaacttatttgacagccataaatttacaaagaaaaagta 406  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  5200144 gacaacttatttgacaaccat-aatttacaaagaaaaagta 5200183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 405
Target Start/End: Original strand, 9634329 - 9634392
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagt 405  Q
    ||||||||||||||||| |||| | |||||||| ||  ||| |||| ||||||||||||||||||    
T  9634329 gtgttatttgaacaatcatttggttgacaactttttgaacaaccat-aatttacaaagaaaaagt 9634392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 445
Target Start/End: Original strand, 36211953 - 36212056
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagat 440  Q
    ||||||||||||||| | |||| | || || |||| |||||  ||||| |||| ||||||||||||| | || |||| || ||||||| |||||||||||    
T  36211953 gtgttatttgaacaaccatttggttgataaattatgtgacaatcataa-tttataaagaaaaagtaaatatttgcacgaaaatcaaagtaatagagagat 36212051  T
Q  441 gaagt 445  Q
     ||||    
T  36212052 aaagt 36212056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 333 - 440
Target Start/End: Original strand, 34570479 - 34570586
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaat 432  Q
    |||||||||||||||||||| || |||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  34570479 aaagaggtgtgttatttgaataaccttttgatagacaatttatttgacaaccataaatttataaagaaaaaataagttttagcacaaatatcaaagcaat 34570578  T
Q  433 agagagat 440  Q
    ||| ||||    
T  34570579 agaaagat 34570586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 11005066 - 11005205
Alignment:
Q  19 tgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaattacatatgagagagtaa 118  Q
    |||||||||||||| |||||||||||||||| ||||| |||| ||||||| ||||||||||| || ||||  |||  |||| |||| || ||||| ||||    
T  11005066 tgtggtgaaattctaagattcataggtaaaagtggttcctttagatgacactttaggaatatcta-tatgcttatatttcagttacctacgagagtgtaa 11005164  T
Q  119 gtccccgccttaataactatccgaccatttacggaatccta 159  Q
     ||||| |||| ||||||||| |||||| |||| |||||||    
T  11005165 ctccccaccttgataactatctgaccatgtacgaaatccta 11005205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 24322427 - 24322544
Alignment:
Q  22 ggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaattacatatgagagagtaagtc 121  Q
    ||||||||| | || ||||||| ||||| |||||  ||| ||||||||||||||| ||| |||||||| |||| ||||||||||| ||| ||  ||||||    
T  24322427 ggtgaaattataagtttcatagataaaagtggttcatttagatgacaatttaggactatctactatgtttatgtttcaattacatgtgaaagtataagtc 24322526  T
Q  122 cccgccttaataactatc 139  Q
     || ||||||||||||||    
T  24322527 tccaccttaataactatc 24322544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 402
Target Start/End: Complemental strand, 33656955 - 33656888
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaa 402  Q
    |||| |||||||||||||||| | |||||| ||||| |||||||||| ||||||||||||||| ||||    
T  33656955 agagatgtgttatttgaacaaccatttgattgacaatttatttgacaaccataaatttacaaaaaaaa 33656888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 13143270 - 13143378
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||||||||| | |||| | |||||||| |  |||| |||||| ||||||||||||||||  || || |||| || ||||||||||||||    
T  13143270 gaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataa-tttacaaagaaaaagtttgtatttgcacgaaaatcaaagcaataga 13143368  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  13143369 gagataaagt 13143378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 445
Target Start/End: Original strand, 32459402 - 32459512
Alignment:
Q  334 aagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaata 433  Q
    |||||| |||||||||||||||   |||||| |||||||| |  |||| |||||| ||||||||||||||||  || || |||| || | ||||||||||    
T  32459402 aagaggagtgttatttgaacaacaatttgattgacaacttttaggacaaccataa-tttacaaagaaaaagttggtatttgcacgaaaaccaaagcaata 32459500  T
Q  434 gagagatgaagt 445  Q
    ||||||| ||||    
T  32459501 gagagataaagt 32459512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 445
Target Start/End: Original strand, 18141188 - 18141297
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    ||||| ||||||||||||||| | |||| | |||||||| | ||||| |||| ||||||||||||| ||||  || |  |||| || |||||||||||||    
T  18141188 agaggagtgttatttgaacaaccatttggttgacaacttttgtgacaaccat-aatttacaaagaataagttggtatgtgcacgaaaatcaaagcaatag 18141286  T
Q  435 agagatgaagt 445  Q
    |||||| ||||    
T  18141287 agagataaagt 18141297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 868840 - 868948
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||||||||| | |||| | |||| ||||  ||| | |||||| |||||||||||||||||||| || | ||||| | |||| |||||||    
T  868840 gaggagtgttatttgaacaaccatttggttgacaccttacatgataaccataa-tttacaaagaaaaagtaagtatttgtacaaaaaccaaatcaataga 868938  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  868939 gagataaagt 868948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 344 - 445
Target Start/End: Complemental strand, 26832821 - 26832721
Alignment:
Q  344 ttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagatgaa 443  Q
    |||||||||||| | |||||| |||||||||| ||||| |||| ||||||| |||||||| || || || |||| || | |||| |||||||||||| ||    
T  26832821 ttatttgaacaaccatttgattgacaacttatgtgacaaccat-aatttacgaagaaaaactatgtatttgcacgaaaaccaaaacaatagagagataaa 26832723  T
Q  444 gt 445  Q
    ||    
T  26832722 gt 26832721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 445
Target Start/End: Complemental strand, 1369538 - 1369435
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagat 440  Q
    ||||||||||||||| | |||| | ||||| || |  |||| |||||| ||||||||||||||||  || || |||| || |||||||||||||||||||    
T  1369538 gtgttatttgaacaaccatttggttgacaatttttgagacaaccataa-tttacaaagaaaaagttggtatttgcacgaaaatcaaagcaatagagagat 1369440  T
Q  441 gaagt 445  Q
     ||||    
T  1369439 aaagt 1369435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 433
Target Start/End: Original strand, 6531065 - 6531164
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaat 432  Q
    ||||||| ||||||||||||||| | |||| | || |||| ||  |||| |||||| ||||||||||||||||| || || |||| || |||||||||||    
T  6531065 aaagaggagtgttatttgaacaaccatttggttgataactaatgggacaaccataa-tttacaaagaaaaagtatgtatttgcacgaaaatcaaagcaat 6531163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 445
Target Start/End: Original strand, 35213447 - 35213557
Alignment:
Q  334 aagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaata 433  Q
    |||||| ||||||||||||||| | |||| | |||||||| |  ||||  ||||| ||||||||||||||||  || || |||| || | ||||||||||    
T  35213447 aagaggagtgttatttgaacaaccatttggttgacaacttttgggacaatcataa-tttacaaagaaaaagttggtatttgcacgaaaaccaaagcaata 35213545  T
Q  434 gagagatgaagt 445  Q
    ||||||| ||||    
T  35213546 gagagataaagt 35213557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 403
Target Start/End: Complemental strand, 31749543 - 31749482
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaa 403  Q
    ||||||||||||||||| |||||| |||||||||   |||| |||| ||||||||||||||||    
T  31749543 gtgttatttgaacaatcatttgattgacaacttaagagacaaccat-aatttacaaagaaaaa 31749482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 401
Target Start/End: Complemental strand, 3832646 - 3832582
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaa 401  Q
    |||| ||||||||||||||| | |||||| ||||||||||  |||| |||| ||||||||||||||    
T  3832646 gaggagtgttatttgaacaaccatttgattgacaacttatgggacaaccat-aatttacaaagaaa 3832582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 403
Target Start/End: Original strand, 11547416 - 11547483
Alignment:
Q  335 agaggtgtgttatttgaacaatc-ttttgatagacaacttatttgacagccataaatttacaaagaaaaa 403  Q
    ||||| |||||||||||||||||  |||| | ||||| ||||||||||||||| ||||||||||||||||    
T  11547416 agaggagtgttatttgaacaatcaatttggt-gacaatttatttgacagccat-aatttacaaagaaaaa 11547483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 26271054 - 26271183
Alignment:
Q  15 ggtatgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaattacatatgagaga 114  Q
    |||||||||||||||||| |||||| || |||||| |||||  ||| ||| | |||| |||||| | || |||| ||||  ||||||||| | |||| ||    
T  26271054 ggtatgtggtgaaattctaagattcctaagtaaaagtggttcatttagattaaaattaaggaatttctattatgcctatatttcaattacctgtgaggga 26271153  T
Q  115 gtaagtccccgccttaataactatccgacc 144  Q
    |||| | ||| |||||  |||||| |||||    
T  26271154 gtaatttcccaccttatcaactattcgacc 26271183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 439
Target Start/End: Original strand, 31883189 - 31883293
Alignment:
Q  334 aagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaata 433  Q
    ||||| ||| ||||||||||||   |||||| ||||| || |  |||| |||||| ||||||||||||||| | || ||  |||||| ||||||||||||    
T  31883189 aagagttgtattatttgaacaactatttgattgacaatttttgggacaaccataattttacaaagaaaaag-aggtcttgacacaaaaatcaaagcaata 31883287  T
Q  434 gagaga 439  Q
    ||||||    
T  31883288 gagaga 31883293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 445
Target Start/End: Original strand, 2688958 - 2689061
Alignment:
Q  342 tgttatttgaacaatct-tttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagat 440  Q
    ||||||||||||||||  |||| | |||||||| | ||||| |||||| |||| |||||||||||| || || ||||| | | |||| ||||||||||||    
T  2688958 tgttatttgaacaatcaatttggttgacaacttttgtgacaaccataa-tttataaagaaaaagtaggtatttgcacataaaccaaaacaatagagagat 2689056  T
Q  441 gaagt 445  Q
     ||||    
T  2689057 aaagt 2689061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 334 - 445
Target Start/End: Complemental strand, 18695504 - 18695393
Alignment:
Q  334 aagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaata 433  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| || ||||||||||||    
T  18695504 aagaggtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaaggaaaagtaggttttagcacgaaaatcaaagcaata 18695405  T
Q  434 gagagatgaagt 445  Q
    ||||||| ||||    
T  18695404 gagagataaagt 18695393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 6940037 - 6940146
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||| || ||||||||||||||    
T  6940037 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaaggaaaagtaggttttggcacgaaaatcaaagcaataga 6940136  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  6940137 gagataaagt 6940146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 334 - 445
Target Start/End: Original strand, 9939317 - 9939428
Alignment:
Q  334 aagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaata 433  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||| |||||||||||||||| ||||||| ||||| |||| || ||||||||||||    
T  9939317 aagaggtgtgttatttgaacaaccatttgatagacaatttatttgacaaccataaatttacaaaggaaaagtaggttttggcacgaaaatcaaagcaata 9939416  T
Q  434 gagagatgaagt 445  Q
    ||||||| ||||    
T  9939417 gagagataaagt 9939428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 19964097 - 19963974
Alignment:
Q  15 ggtatgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaattacatatgagaga 114  Q
    |||||||||||||||||| |||||  ||||||||| | ||||| || ||||||||||||| ||| | || ||||  |||  ||||||||| | |||||||    
T  19964097 ggtatgtggtgaaattctaagatttctaggtaaaagttgtttccttagatgacaatttagaaatttctattatgcttataattcaattacctgtgagaga 19963998  T
Q  115 gtaagtccccgccttaataactat 138  Q
    ||||||| || |||||||||||||    
T  19963997 gtaagtctccaccttaataactat 19963974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 445
Target Start/End: Original strand, 41175592 - 41175702
Alignment:
Q  334 aagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaata 433  Q
    |||||| ||||||||||||||| | |||| | |||||||||| ||||| |||||| ||||||||||||||||  || || |||| || ||||||||||||    
T  41175592 aagaggagtgttatttgaacaaccatttggttgacaacttatgtgacaaccataa-tttacaaagaaaaagtgggtatttgcacgaagatcaaagcaata 41175690  T
Q  434 gagagatgaagt 445  Q
    ||||||| ||||    
T  41175691 gagagataaagt 41175702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 445
Target Start/End: Original strand, 15952938 - 15953041
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagat 440  Q
    ||||||||||||||| | |||| | |||||||||| ||||| |||||| ||||||||||||||||  || || |||| || |||||||||||||||||||    
T  15952938 gtgttatttgaacaaccatttggttgacaacttatgtgacaaccataa-tttacaaagaaaaagtgggtatttgcacgaaaatcaaagcaatagagagat 15953036  T
Q  441 gaagt 445  Q
     ||||    
T  15953037 aaagt 15953041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 440
Target Start/End: Complemental strand, 10865471 - 10865398
Alignment:
Q  367 acaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagat 440  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| ||  ||| || ||||||| |||||||||||    
T  10865471 acaacttatttgacaaccatagatttacaaagaaaaagtaagtattgacacgaaaatcaaagtaatagagagat 10865398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 445
Target Start/End: Complemental strand, 10649621 - 10649510
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaat 432  Q
    ||||||| ||||||||||||||| | |||| | |||||||| | ||||| |||| ||||||||||||||||||  || |  |||| || |||||||||||    
T  10649621 aaagaggagtgttatttgaacaaccatttggttgacaacttttgtgacaaccat-aatttacaaagaaaaagttggtatgtgcacgaaaatcaaagcaat 10649523  T
Q  433 agagagatgaagt 445  Q
    |||||||| ||||    
T  10649522 agagagataaagt 10649510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 27248057 - 27248177
Alignment:
Q  15 ggtatgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaattacatatgagaga 114  Q
    |||||||||||||||| | |||||| ||||||||| ||||| ||||  ||  |||||||||||| | |||||||  |||| ||||||| ||| |||||||    
T  27248057 ggtatgtggtgaaattttaagattcttaggtaaaagtggttcctttatatatcaatttaggaatttatactatgcatatgtttcaattgcatgtgagaga 27248156  T
Q  115 gtaagtccccgccttaataac 135  Q
      ||||| ||| |||||||||    
T  27248157 caaagtctccgtcttaataac 27248177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 8675321 - 8675429
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||||||||| | |||| | |||||||| |  |||| |||||| ||||||||||||||||  || || |||| || ||||||||||||||    
T  8675321 gaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataa-tttacaaagaaaaagttggtatttgcacgaaaatcaaagcaataga 8675419  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  8675420 gagataaagt 8675429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 15434918 - 15435046
Alignment:
Q  10 gcaaaggtatgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaattacatatg 109  Q
    |||| ||||||| || ||||||| ||||||||| | |||| || || |||| ||||| |||||||||||||  ||| ||  |||| ||||||||  ||||    
T  15434918 gcaagggtatgtcgtcaaattctaagattcatacgcaaaagtgattcctttagatgaaaatttaggaatatcaactctgcttatgtttcaattatctatg 15435017  T
Q  110 agagagtaagtccccgccttaataactat 138  Q
    |||| |||||| | || ||||||||||||    
T  15435018 agagtgtaagttctcgtcttaataactat 15435046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 437
Target Start/End: Original strand, 36321684 - 36321785
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||||||||||||||||||| | ||||||  ||||||||||  | | ||||| |||||||||||||||  | || ||  |||||| || |||||||||||    
T  36321684 gaggtgtgttatttgaacaaccatttgattaacaacttattgaaaaaccatagatttacaaagaaaaatcatgtattgacacaaaaataaaagcaataga 36321783  T
Q  436 ga 437  Q
    ||    
T  36321784 ga 36321785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 406
Target Start/End: Complemental strand, 2224969 - 2224905
Alignment:
Q  341 gtgttatttgaacaatct-tttgatagacaacttatttgacagccataaatttacaaagaaaaagta 406  Q
    ||||||||||||||| |  |||||| |||||||||||||||| |||||| |||||||||||||||||    
T  2224969 gtgttatttgaacaaccaatttgat-gacaacttatttgacaaccataa-tttacaaagaaaaagta 2224905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 24859246 - 24859312
Alignment:
Q  340 tgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagta 406  Q
    ||||||||||||| |||  |||| | ||||||||||||||||  |||| ||||||||| ||||||||    
T  24859246 tgtgttatttgaataattatttggttgacaacttatttgacaatcatatatttacaaataaaaagta 24859312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 435
Target Start/End: Original strand, 38704090 - 38704183
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    ||||||||||||||| | ||||||  ||||||| |  |||| |||||| ||||||||||||||||  || || |||| || ||||||||||||||    
T  38704090 gtgttatttgaacaaccatttgattaacaacttttgggacaaccataa-tttacaaagaaaaagttggtatttgcacgaaaatcaaagcaataga 38704183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 445
Target Start/End: Complemental strand, 43441922 - 43441813
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    ||||| ||||||||||||||| | |||| | |||||||| |  |||| |||| |||||||||||||||| |  || || |||| || | |||||||||||    
T  43441922 agaggagtgttatttgaacaaccatttggttgacaacttttaagacaaccat-aatttacaaagaaaaaattggtatttgcacgaaaaccaaagcaatag 43441824  T
Q  435 agagatgaagt 445  Q
    |||||| ||||    
T  43441823 agagataaagt 43441813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 445
Target Start/End: Complemental strand, 9226432 - 9226375
Alignment:
Q  388 aatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagatgaagt 445  Q
    |||||||||||||||||||||| || ||||  | |||||| |||||||||||| ||||    
T  9226432 aatttacaaagaaaaagtaagtatttgcacggaaatcaaaacaatagagagataaagt 9226375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 445
Target Start/End: Complemental strand, 20770263 - 20770206
Alignment:
Q  388 aatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagatgaagt 445  Q
    ||||||||||||||||||| || ||  ||| || ||||||||||||||||||| ||||    
T  20770263 aatttacaaagaaaaagtaggtattgacacgaaaatcaaagcaatagagagataaagt 20770206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 445
Target Start/End: Original strand, 189588 - 189699
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaat 432  Q
    ||||||| ||||||||||||||||| |||| | |||||||| |  ||||  ||| |||||| |||||||||||   | || |||| || | |||||||||    
T  189588 aaagaggagtgttatttgaacaatcatttggttgacaacttttgggacaatcat-aatttataaagaaaaagttgatatttgcacgaaaaccaaagcaat 189686  T
Q  433 agagagatgaagt 445  Q
    |||||||| ||||    
T  189687 agagagataaagt 189699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 333 - 440
Target Start/End: Original strand, 3078792 - 3078899
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaat 432  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||| || |||||||||||    
T  3078792 aaagaggtgtcttatttgaacaatcatttgatagacaacttatttgacaaccataaatttacaaaggaaaagtaggttttggcacgaaaatcaaagcaat 3078891  T
Q  433 agagagat 440  Q
    ||||||||    
T  3078892 agagagat 3078899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 336 - 445
Target Start/End: Complemental strand, 42815588 - 42815479
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||| || ||||||||||||||    
T  42815588 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaaggaaaagtaggtttttgcacgaaaatcaaagcaataga 42815489  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  42815488 gagataaagt 42815479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 342 - 445
Target Start/End: Original strand, 37514025 - 37514128
Alignment:
Q  342 tgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagatg 441  Q
    |||||||||||||| | ||||||||| || |||||||||| |||||||||||||||||||||||| ||||| |||| || |||||||||||||||||||     
T  37514025 tgttatttgaacaaccatttgatagagaatttatttgacaaccataaatttacaaagaaaaagtaggttttggcacgaaaatcaaagcaatagagagata 37514124  T
Q  442 aagt 445  Q
    ||||    
T  37514125 aagt 37514128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 17263384 - 17263254
Alignment:
Q  8 tagcaaaggtatgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaattacata 107  Q
    |||||| |||||||| ||||||||| |||||| ||||||||| ||||| ||||  | |||||||||||||| | |||||||||||||  |||||||| |     
T  17263384 tagcaagggtatgtgatgaaattctaagattcctaggtaaaagtggtt-ctttaaacgacaatttaggaatttctactatgtctatgtatcaattacttg 17263286  T
Q  108 tgagagagtaagtccccgccttaataactatc 139  Q
    ||||||||||||||||| |  |||||||||||    
T  17263285 tgagagagtaagtccccacaataataactatc 17263254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 44810618 - 44810502
Alignment:
Q  15 ggtatgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaattacatatgagaga 114  Q
    |||||||||| ||||||| |||||||||||| ||| |||||||||| ||||| ||||||| ||||| |||||||  |||| ||||||||  ||||||||     
T  44810618 ggtatgtggtaaaattctaagattcataggtgaaagtggtttctttagatgaaaatttagaaatatctactatgcttatgtttcaattatctatgagagt 44810519  T
Q  115 gtaagtccccgccttaa 131  Q
    |||||||| || |||||    
T  44810518 gtaagtcctcgtcttaa 44810502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 445
Target Start/End: Complemental strand, 12139039 - 12138928
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaat 432  Q
    |||||||  |||||||||||||| | |||||| || ||||||| | ||| |||||| ||||||||||||||||| || || ||||||| ||||||| |||    
T  12139039 aaagaggaatgttatttgaacaaccatttgattgataacttatgtaacaaccataa-tttacaaagaaaaagtaggtatttgcacaaaaatcaaagtaat 12138941  T
Q  433 agagagatgaagt 445  Q
    |||||||| ||||    
T  12138940 agagagataaagt 12138928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 440
Target Start/End: Original strand, 1815887 - 1815992
Alignment:
Q  334 aagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaata 433  Q
    |||||| ||||||||||||||| | | || | |||||||||| |||||||||| ||||||||||||||||||   | || ||||||| |||||| |||||    
T  1815887 aagaggagtgttatttgaacaaccatctggttgacaacttatgtgacagccat-aatttacaaagaaaaagtggatatttgcacaaaaatcaaaacaata 1815985  T
Q  434 gagagat 440  Q
    |||||||    
T  1815986 gagagat 1815992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 439
Target Start/End: Original strand, 50831642 - 50831745
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    |||| |||||||||||||||| | |||||| |||||||| |  |||| |||||| ||||||||||||||| | || ||  |||||| |||||||||||||    
T  50831642 agagttgtgttatttgaacaaccatttgattgacaacttttgggacaaccataattttacaaagaaaaag-aggtcttgacacaaaaatcaaagcaatag 50831740  T
Q  435 agaga 439  Q
    |||||    
T  50831741 agaga 50831745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 32696673 - 32696745
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagt 405  Q
    ||||||||||||||||||||||| | |||| | ||||| |||||  ||| |||||||||||||||| ||||||    
T  32696673 aaagaggtgtgttatttgaacaaccatttggttgacaatttattgtacaaccataaatttacaaagtaaaagt 32696745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 445
Target Start/End: Original strand, 46405867 - 46405970
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagat 440  Q
    ||||||||||||||||| |||| | || || || || |||| |||||| ||||||||||||||||  || || |||| || |||||||||||||||||||    
T  46405867 gtgttatttgaacaatcatttggttgataattttttggacaaccataa-tttacaaagaaaaagttggtatttgcacgaaaatcaaagcaatagagagat 46405965  T
Q  441 gaagt 445  Q
     ||||    
T  46405966 aaagt 46405970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 440
Target Start/End: Complemental strand, 52895404 - 52895308
Alignment:
Q  344 ttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagat 440  Q
    |||||||||||| | |||||| ||||||| |||||||| ||||  |||||||||||||| |||  | ||  ||| || |||||||||||||||||||    
T  52895404 ttatttgaacaaccatttgattgacaactcatttgacaaccatggatttacaaagaaaatgtagatattgacacgaaaatcaaagcaatagagagat 52895308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 440
Target Start/End: Original strand, 13104279 - 13104373
Alignment:
Q  345 tatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagat 440  Q
    ||||||||||| | |||||| |||||||||  ||||| |||||| |||||||||||||||||  | || ||||||| | |||||||||||| ||||    
T  13104279 tatttgaacaaccatttgattgacaacttacatgacaaccataa-tttacaaagaaaaagtagatatttgcacaaacaccaaagcaatagaaagat 13104373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 440
Target Start/End: Complemental strand, 56271538 - 56271440
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagat 440  Q
    ||||||||||||||  | |||| | |||||||| | ||||| |||||| ||||||||||||||||| || || |||| || | |||||||||||||||||    
T  56271538 gtgttatttgaacatccatttgtttgacaacttttatgacaaccataa-tttacaaagaaaaagtaggtatttgcacgaaaaccaaagcaatagagagat 56271440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 445
Target Start/End: Complemental strand, 22819833 - 22819724
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    ||||| ||||||||||||||| | |||| | |||||||| |  |||| |||||| ||||||||||||||||  || || |||| || ||||||||||||     
T  22819833 agaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataa-tttacaaagaaaaagttggtatttgcacgaaaatcaaagcaataa 22819735  T
Q  435 agagatgaagt 445  Q
    |||||| ||||    
T  22819734 agagataaagt 22819724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 1140789 - 1140720
Alignment:
Q  340 tgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagt 409  Q
    |||||||||||||||||  ||| ||   |||||||| ||||| ||||| |||||||||||||||||||||    
T  1140789 tgtgttatttgaacaattattttattcgcaacttatgtgacaaccatagatttacaaagaaaaagtaagt 1140720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 12880161 - 12880060
Alignment:
Q  36 attcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaattacatatgagagagtaagtccccgccttaataac 135  Q
    |||||||||||||| | |||  ||| ||||||||||||| ||||| |||||||  |||  ||||||||| | |||||| |||  ||| ||||||||||||    
T  12880161 attcataggtaaaagttgttcatttagatgacaatttagaaatatctactatgcttatatttcaattacttgtgagagtgtagctcctcgccttaataac 12880062  T
Q  136 ta 137  Q
    ||    
T  12880061 ta 12880060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 54669470 - 54669541
Alignment:
Q  334 aagaggtgtgttatttgaacaatct-tttgatagacaacttatttgacagccataaatttacaaagaaaaagta 406  Q
    |||||| ||||||||||||||| |  |||||| |||||||||||||||| |||| |||||||||||||||||||    
T  54669470 aagaggagtgttatttgaacaaccaatttgat-gacaacttatttgacaaccat-aatttacaaagaaaaagta 54669541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 439
Target Start/End: Original strand, 10474031 - 10474102
Alignment:
Q  367 acaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagaga 439  Q
    ||||||| | ||||| |||||||||||||||||||||| |||| ||  |||||| ||||||| ||||||||||    
T  10474031 acaacttttatgacaaccataaatttacaaagaaaaag-aagtattgacacaaaaatcaaagtaatagagaga 10474102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 440
Target Start/End: Complemental strand, 13086205 - 13086102
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||||||||| | ||||||  | ||||| |  |||| |||||| ||||||||||||||||  || || |||| || ||||||||||||||    
T  13086205 gaggagtgttatttgaacaaccgtttgattaataacttttgggacaaccataa-tttacaaagaaaaagttggtatttgcacgaaaatcaaagcaataga 13086107  T
Q  436 gagat 440  Q
    |||||    
T  13086106 gagat 13086102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 23662211 - 23662271
Alignment:
Q  343 gttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaa 403  Q
    ||||||||||||| | ||| || ||||| |||||||| | |||||||||||||||||||||    
T  23662211 gttatttgaacaaccatttaattgacaatttatttgataaccataaatttacaaagaaaaa 23662271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 28571859 - 28571771
Alignment:
Q  15 ggtatgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaatta 103  Q
    |||||||||||||||||| | |||  ||||||||| ||||| |||| ||||| ||||||||||| | ||  ||| ||||| ||||||||    
T  28571859 ggtatgtggtgaaattctaaaatttctaggtaaaagtggttcctttagatgataatttaggaatttctatcatgcctatgtttcaatta 28571771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 33423525 - 33423461
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaa 397  Q
    |||||| ||||||||||| |||| | ||| || |||||||||||||| | |||||||||||||||    
T  33423525 aaagagatgtgttatttgcacaaccattttatggacaacttatttgataaccataaatttacaaa 33423461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 48747510 - 48747466
Alignment:
Q  91 tatggttcaattacatatgagagagtaagtccccgccttaataac 135  Q
    |||| ||||||||  ||||||||||||||||||||||||||||||    
T  48747510 tatgtttcaattatctatgagagagtaagtccccgccttaataac 48747466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 402
Target Start/End: Complemental strand, 21025786 - 21025719
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaa 402  Q
    |||||||||||||||||||||||  ||||  |||||||| | ||||| |||  |||||||||||||||    
T  21025786 agaggtgtgttatttgaacaatcaattgagtgacaacttttgtgacaaccactaatttacaaagaaaa 21025719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 445
Target Start/End: Complemental strand, 2999296 - 2999187
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    ||||| ||||||||||||||| | ||| || |||||||| |  |||| |||| ||||||||||||||||||  || || |||  || | |||||||||||    
T  2999296 agaggagtgttatttgaacaaccatttaattgacaacttttaggacaaccat-aatttacaaagaaaaagttggtatttgcatgaaaaccaaagcaatag 2999198  T
Q  435 agagatgaagt 445  Q
    |||||| ||||    
T  2999197 agagataaagt 2999187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 402
Target Start/End: Complemental strand, 35936153 - 35936083
Alignment:
Q  332 caaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaa 402  Q
    |||||||||||||||||||||||||| ||||   |||||||| |  |||| ||||| ||| ||||||||||    
T  35936153 caaagaggtgtgttatttgaacaatcatttgtgtgacaacttttaggacaaccatacattcacaaagaaaa 35936083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 434
Target Start/End: Complemental strand, 42491253 - 42491160
Alignment:
Q  340 tgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    |||||||||||||||| | |||||| |||||||| |  |||| |||||| || |||||||||||| | || || ||||||| | |||||||||||    
T  42491253 tgtgttatttgaacaaccatttgattgacaacttttgggacaaccataatttcacaaagaaaaag-aggtattggcacaaaaaccaaagcaatag 42491160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 52895443 - 52895397
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttga 379  Q
    |||||| |||||||||||||||| | |||||| ||||||||||||||    
T  52895443 aaagagttgtgttatttgaacaaccatttgattgacaacttatttga 52895397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 18464289 - 18464168
Alignment:
Q  17 tatgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaattacatatgagagagt 116  Q
    ||||| |||||||| | ||||| |||||||||| ||||| || | |||| |||||||| ||||| ||| ||   || | ||||||||| |||| ||| ||    
T  18464289 tatgttgtgaaattttaagattaataggtaaaattggttcctctagatgtcaatttagaaatatctacaatacttaagtttcaattacctatgggagtgt 18464190  T
Q  117 aagtccccgccttaataactat 138  Q
    |||||   ||||||||||||||    
T  18464189 aagtctttgccttaataactat 18464168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 402
Target Start/End: Complemental strand, 27371327 - 27371258
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaa 402  Q
    |||||||||||||||||||||||   |||  | || |||||||  |||| ||||||||||||||||||||    
T  27371327 aaagaggtgtgttatttgaacaacaatttatttgagaacttatgagacaaccataaatttacaaagaaaa 27371258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 445
Target Start/End: Original strand, 28458316 - 28458373
Alignment:
Q  388 aatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagatgaagt 445  Q
    ||||||||||||||||||| || ||  ||| || ||||||||||||||||||| ||||    
T  28458316 aatttacaaagaaaaagtaggtattgacacgaaaatcaaagcaatagagagataaagt 28458373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 445
Target Start/End: Original strand, 38338861 - 38338918
Alignment:
Q  388 aatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagatgaagt 445  Q
    |||||| ||||||||| || || || ||||||| ||||||||||||||||||| ||||    
T  38338861 aatttataaagaaaaaataggtatttgcacaaaaatcaaagcaatagagagataaagt 38338918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 445
Target Start/End: Original strand, 54802567 - 54802672
Alignment:
Q  340 tgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagaga 439  Q
    ||||||||||||||||  |||||   |||||||||||||||| | |||  |||| ||||||||| || || ||  ||| || || |||||||||||||||    
T  54802567 tgtgttatttgaacaactttttgggtgacaacttatttgacaactatagttttataaagaaaaaataggtattgacacgaaaattaaagcaatagagaga 54802666  T
Q  440 tgaagt 445  Q
    | ||||    
T  54802667 taaagt 54802672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 406
Target Start/End: Original strand, 55601601 - 55601665
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagta 406  Q
    |||||||||||||||||  ||    |||||||||||||||| ||| ||||||||||||||||||||    
T  55601601 gtgttatttgaacaatcaattttgtgacaacttatttgacaacca-aaatttacaaagaaaaagta 55601665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 17683527 - 17683456
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagt 405  Q
    ||||||| ||||||||||||||| | |||| | |||||||| |  |||| |||| ||||||||||||||||||    
T  17683527 aaagaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccat-aatttacaaagaaaaagt 17683456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 31076206 - 31076167
Alignment:
Q  366 gacaacttatttgacagccataaatttacaaagaaaaagta 406  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  31076206 gacaacttatttgacaaccataa-tttacaaagaaaaagta 31076167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 445
Target Start/End: Complemental strand, 51887848 - 51887738
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaat 432  Q
    ||||||| ||||||||||||||| | ||| || ||||||||||  |||| |||| ||||| |||||||| | || || || |||| || |||||| ||||    
T  51887848 aaagaggagtgttatttgaacaa-cctttaattgacaacttataggacaaccat-aatttgcaaagaaagaatatgtatttgcacgaaaatcaaaacaat 51887751  T
Q  433 agagagatgaagt 445  Q
    |||||||| ||||    
T  51887750 agagagataaagt 51887738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 10644689 - 10644798
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||| || || |||||||||||    
T  10644689 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaaggaaaagtaggttttggcacgaaaattaaagcaataga 10644788  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  10644789 gagataaagt 10644798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 10647427 - 10647298
Alignment:
Q  9 agcaaaggtatgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaattacatat 108  Q
    ||||| ||||||||||||||||   ||||||||| |||||| |||||||||| ||||||||||||||||||| |||||||  | || ||||||||| |||    
T  10647427 agcaagggtatgtggtgaaatttgaagattcatatgtaaaagtggtttctttagatgacaatttaggaatatatactatgattctgtttcaattacctat 10647328  T
Q  109 gagagag-taagtccccgccttaataacta 137  Q
    ||||||| ||||||||| ||||||||||||    
T  10647327 gagagagttaagtccccaccttaataacta 10647298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 30439394 - 30439502
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||||||||| | |||| | || ||||||| ||||| |||||| |||||||||||||| | ||| || |||| || ||||||||||||||    
T  30439394 gaggagtgttatttgaacaaccatttggttgataacttatgtgacaaccataa-tttacaaagaaaaaatgagtatttgcacgaaaatcaaagcaataga 30439492  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  30439493 gagataaagt 30439502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 445
Target Start/End: Complemental strand, 6445366 - 6445252
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaa--gtaagttttagcacaaatatcaaagca 430  Q
    |||||| |||||||||||||| | | |||||| ||||||||||  |||| ||||||||||||||| |||||  |||  | ||| |||||| |||||| ||    
T  6445366 aaagagatgtgttatttgaacgaccatttgattgacaacttatgggacaaccataaatttacaaaaaaaaaaggtagatattaacacaaaaatcaaaaca 6445267  T
Q  431 atagagagatgaagt 445  Q
    |||||||||| ||||    
T  6445266 atagagagataaagt 6445252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 445
Target Start/End: Original strand, 36885374 - 36885484
Alignment:
Q  334 aagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaata 433  Q
    |||||| ||||||||||||||| | |||| | ||||||||||  |||| |||||| ||||||||||||||||| || ||  ||| || ||||||||||||    
T  36885374 aagaggagtgttatttgaacaaccatttggtggacaacttatgggacaaccataa-tttacaaagaaaaagtaggtattgacacgaaaatcaaagcaata 36885472  T
Q  434 gagagatgaagt 445  Q
     |||||| ||||    
T  36885473 aagagataaagt 36885484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 445
Target Start/End: Complemental strand, 24795434 - 24795323
Alignment:
Q  334 aagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaata 433  Q
    ||||||| ||||||||||||||   |||| | ||||||||||  |||| ||||||||||| |||| | ||||| || ||| ||| ||  |||||||||||    
T  24795434 aagaggtatgttatttgaacaactatttgtttgacaacttatgagacaaccataaatttataaaggagaagtaggtattaacactaaagtcaaagcaata 24795335  T
Q  434 gagagatgaagt 445  Q
    ||||||| ||||    
T  24795334 gagagataaagt 24795323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 445
Target Start/End: Original strand, 29440407 - 29440519
Alignment:
Q  333 aaagaggtgtgttatttgaacaatct-tttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaa 431  Q
    ||||||| |||||||||||||||||  |||||| ||||| |||  ||||| |||||| |||| | ||||||||||||| || ||||  | |||||| |||    
T  29440407 aaagaggagtgttatttgaacaatcaatttgattgacaatttacgtgacaaccataa-tttatacagaaaaagtaagtatttgcacggaaatcaaaacaa 29440505  T
Q  432 tagagagatgaagt 445  Q
    ||||||||| ||||    
T  29440506 tagagagataaagt 29440519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 14625942 - 14625879
Alignment:
Q  15 ggtatgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaat 78  Q
    |||||||||||||||||| |||||||||  ||||| ||||| |  | |||||||||||||||||    
T  14625942 ggtatgtggtgaaattctaagattcatatttaaaagtggttccgatagatgacaatttaggaat 14625879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 439
Target Start/End: Complemental strand, 13106666 - 13106561
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaat 432  Q
    |||||| |||||||||||||||| | |||    |||||||| | | ||| |||||||||||||||||||||| | || ||  |||||| | |||||||||    
T  13106666 aaagagttgtgttatttgaacaaccatttaggtgacaacttttataacaaccataaatttacaaagaaaaag-aggtattgacacaaaaagcaaagcaat 13106568  T
Q  433 agagaga 439  Q
    |||||||    
T  13106567 agagaga 13106561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 437
Target Start/End: Original strand, 22960305 - 22960407
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    |||| |||||||||| |||||   |||||| |||||||||||||||| ||||  |||||||||| |||| |  || ||  ||||||  ||||||||||||    
T  22960305 agagatgtgttatttaaacaacaatttgattgacaacttatttgacaaccattgatttacaaaggaaaaatgggtattgacacaaaagtcaaagcaatag 22960404  T
Q  435 aga 437  Q
    |||    
T  22960405 aga 22960407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 403
Target Start/End: Original strand, 888150 - 888211
Alignment:
Q  342 tgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaa 403  Q
    ||||||||||||||| |||||   |||||||||||||||| | |||| |||| |||||||||    
T  888150 tgttatttgaacaattttttgggtgacaacttatttgacaactataattttataaagaaaaa 888211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 445
Target Start/End: Complemental strand, 31597131 - 31597023
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||||||||| | |||||| || ||||| |  ||||  ||||| ||||||||||||||||  || || ||||||| | |||| |||||||    
T  31597131 gaggagtgttatttgaacaaccatttgattgataacttttgagacaatcataa-tttacaaagaaaaagttggtatttgcacaaaaaccaaaacaataga 31597033  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  31597032 gagataaagt 31597023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 33958007 - 33958048
Alignment:
Q  340 tgtgttatttgaacaatcttttgatagacaacttatttgaca 381  Q
    |||||||||||||||||| |||| | ||||||||||||||||    
T  33958007 tgtgttatttgaacaatcctttggttgacaacttatttgaca 33958048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 404
Target Start/End: Original strand, 5740677 - 5740741
Alignment:
Q  340 tgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaag 404  Q
    |||||||||||||||  | ||| ||||||||||| |  |||| |||||| |||||||||||||||    
T  5740677 tgtgttatttgaacagccattttatagacaacttttaggacaaccataattttacaaagaaaaag 5740741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 333 - 445
Target Start/End: Original strand, 29573240 - 29573352
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaat 432  Q
    |||||||| |||||||||||||| | |||||||||||| |||||||||| |||||||||||||||| ||||||| ||||| |||| || |||||||||||    
T  29573240 aaagaggtatgttatttgaacaaccatttgatagacaatttatttgacaaccataaatttacaaaggaaaagtaggttttggcacgaaaatcaaagcaat 29573339  T
Q  433 agagagatgaagt 445  Q
    |||||||| ||||    
T  29573340 agagagataaagt 29573352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 32197809 - 32197680
Alignment:
Q  15 ggtatgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaattacatatgagaga 114  Q
    |||||||||||||||||| || ||| || ||||   ||||| |||| ||| ||||||||||||| | ||||||||||||| || |||||| | |||||||    
T  32197809 ggtatgtggtgaaattctaaggttcctatgtaacg-tggttcctttagattacaatttaggaatttctactatgtctatgttttaattacctgtgagaga 32197711  T
Q  115 gtaagtccccgccttaataactatccgacca 145  Q
    |||||||||| ||||||||||||||||||||    
T  32197710 gtaagtccccaccttaataactatccgacca 32197680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 336 - 440
Target Start/End: Original strand, 27718673 - 27718777
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||||||||||||||||||| | |||||||| |||| ||||||||| |||||||||||||||| ||||||| ||||| |||  || |||||| |||||||    
T  27718673 gaggtgtgttatttgaacaaccatttgatagccaacatatttgacaaccataaatttacaaaggaaaagtaggttttggcatgaaaatcaaaacaataga 27718772  T
Q  436 gagat 440  Q
    |||||    
T  27718773 gagat 27718777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 340 - 445
Target Start/End: Complemental strand, 45754819 - 45754713
Alignment:
Q  340 tgtgttatttgaacaatcttttgatagacaacttatttgacagccataaa-tttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagag 438  Q
    |||||||||||||||| | |||||| || |||||||| |||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||  |||||||    
T  45754819 tgtgttatttgaacaaccatttgattgataacttattagacaaccataaaatttacaaagaaaaagtaggttttagcacaaaaatcaaagcggtagagag 45754720  T
Q  439 atgaagt 445  Q
    || ||||    
T  45754719 ataaagt 45754713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 445
Target Start/End: Original strand, 51465798 - 51465910
Alignment:
Q  332 caaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaa 431  Q
    |||||||| ||||||||||||||| | |||| | |||||||| |  |||| |||||| ||||||||||||||||  || || |||| || ||||||||||    
T  51465798 caaagaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataa-tttacaaagaaaaagttggtatttgcacgaaaatcaaagcaa 51465896  T
Q  432 tagagagatgaagt 445  Q
    ||||||||| ||||    
T  51465897 tagagagataaagt 51465910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 10942439 - 10942367
Alignment:
Q  66 acaatttaggaatatttactatgtctatggttcaattacatatgagagagtaagtccccgccttaataactat 138  Q
    |||||||||||||||| |||  || | || ||||||||| ||||||||||||||||||| |||||||||||||    
T  10942439 acaatttaggaatattaacttcgtttttgtttcaattacctatgagagagtaagtccccaccttaataactat 10942367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 445
Target Start/End: Complemental strand, 49761490 - 49761382
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||||||||||| |||  | |||||||||  |||||  ||||| |||| |||||||||||| || || ||||||| | ||||||||||||    
T  49761490 gaggagtgttatttgaacaatcatttagttgacaacttacatgacaatcataa-tttataaagaaaaagtaggtatttgcacaaaaaccaaagcaataga 49761392  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  49761391 gagataaagt 49761382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 437
Target Start/End: Complemental strand, 6999355 - 6999253
Alignment:
Q  334 aagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaata 433  Q
    |||||| ||||||||||||||| | |||| | ||||||||||  |||| |||| ||||||||| |||||| || || || |||| || ||||||||||||    
T  6999355 aagaggagtgttatttgaacaaccatttggttgacaacttatgggacaaccat-aatttacaatgaaaaaatatgtatttgcacgaaaatcaaagcaata 6999257  T
Q  434 gaga 437  Q
    ||||    
T  6999256 gaga 6999253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 437
Target Start/End: Original strand, 24095294 - 24095394
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||||||||  | |||| | |||||||| | ||||| |||||| ||||||||||||||||| || || |||| || | ||||||||||||    
T  24095294 gaggagtgttatttgaacatccatttggttgacaacttttatgacaaccataa-tttacaaagaaaaagtaggtatttgcacgaaaaccaaagcaataga 24095392  T
Q  436 ga 437  Q
    ||    
T  24095393 ga 24095394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 445
Target Start/End: Complemental strand, 26672530 - 26672473
Alignment:
Q  388 aatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagatgaagt 445  Q
    |||||||||||||||||||||| || ||||| | |||||| |||||||||||| ||||    
T  26672530 aatttacaaagaaaaagtaagtatttgcacagaaatcaaaacaatagagagataaagt 26672473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 409
Target Start/End: Original strand, 9158759 - 9158833
Alignment:
Q  335 agaggtgtgttatttgaacaa-tcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagt 409  Q
    ||||| ||||||||||||||| |  |||| | |||||||||| ||||| |||||| ||||||||||||||||||||    
T  9158759 agaggagtgttatttgaacaactaatttggttgacaacttatgtgacaaccataa-tttacaaagaaaaagtaagt 9158833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 35201426 - 35201497
Alignment:
Q  334 aagaggtgtgttatttgaacaatc-ttttgatagacaacttatttgacagccataaatttacaaagaaaaagta 406  Q
    |||||| |||||||||||||||||  |||| | ||||||||||||||||  ||| |||||||||||||||||||    
T  35201426 aagaggagtgttatttgaacaatcaatttggt-gacaacttatttgacaatcat-aatttacaaagaaaaagta 35201497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 402
Target Start/End: Complemental strand, 9311226 - 9311158
Alignment:
Q  334 aagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaa 402  Q
    ||||| |||||||||||||||||| |||| |  |||||||||  |||| ||||| ||||| ||||||||    
T  9311226 aagagttgtgttatttgaacaatcatttgttgaacaacttatgggacaaccatatatttaaaaagaaaa 9311158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 445
Target Start/End: Complemental strand, 21196302 - 21196199
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagat 440  Q
    ||||||||||||||| | |||||| ||||| ||||  || |  ||| |||||||||||||||| || || || |||| || ||||||| |||||||||||    
T  21196302 gtgttatttgaacaaccatttgattgacaatttatgggataatcat-aatttacaaagaaaaaatatgtatttgcacgaaaatcaaagtaatagagagat 21196204  T
Q  441 gaagt 445  Q
     ||||    
T  21196203 aaagt 21196199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 27820497 - 27820569
Alignment:
Q  16 gtatgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatg 88  Q
    |||| |||||||||||| |||||  ||||||||| |||||  ||| ||||||||||||| ||| | |||||||    
T  27820497 gtatctggtgaaattctaagatttttaggtaaaagtggttcttttagatgacaatttagaaatttctactatg 27820569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 428
Target Start/End: Original strand, 29373735 - 29373823
Alignment:
Q  340 tgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaag 428  Q
    |||||||||||||||| |  ||||| |||||||||||  ||| ||||| ||||| ||||||||| || || ||  |||||| |||||||    
T  29373735 tgtgttatttgaacaaccacttgattgacaacttattgaacaaccatatatttataaagaaaaaataggtattgacacaaaaatcaaag 29373823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 401
Target Start/End: Original strand, 46965985 - 46966053
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaa 401  Q
    ||||||||||||||||||||||| | ||||   |||||||| |  ||||  ||||||||||||||||||    
T  46965985 aaagaggtgtgttatttgaacaaccatttgtgtgacaacttttcggacaatcataaatttacaaagaaa 46966053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 346 - 445
Target Start/End: Complemental strand, 46829653 - 46829554
Alignment:
Q  346 atttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagatgaagt 445  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||| ||||    
T  46829653 atttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaagaaaaagtaggttttggcacgaaaatcaaagcaatagagagataaagt 46829554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 1471178 - 1471287
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    ||||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||| |||||  |||| |||| || ||||||||||||||    
T  1471178 gaggtgtgttatttgaacaactatttgatagacaacttatttgacaaccataaatttacaaagaagaagtagattttggcacgaaaatcaaagcaataga 1471277  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  1471278 gagataaagt 1471287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 437
Target Start/End: Complemental strand, 33775125 - 33775022
Alignment:
Q  334 aagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaata 433  Q
    ||||| |||||||||||||||||| |||||| |||||||||||||||| |||| |||||| |||  ||||||| || || | ||||| ||||| ||||||    
T  33775125 aagagatgtgttatttgaacaatcgtttgattgacaacttatttgacaaccatgaatttataaaagaaaagtaggtattggtacaaaaatcaatgcaata 33775026  T
Q  434 gaga 437  Q
    ||||    
T  33775025 gaga 33775022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 445
Target Start/End: Complemental strand, 7817820 - 7817711
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    ||||| ||||||||||||||| | |||| | |||||||||| ||||| |||| ||||||||||||||||||   | || |||| || |||||||||||||    
T  7817820 agaggagtgttatttgaacaaccatttggttgacaacttatgtgacaaccat-aatttacaaagaaaaagtggatatttgcacgaaaatcaaagcaatag 7817722  T
Q  435 agagatgaagt 445  Q
    |||||| ||||    
T  7817721 agagataaagt 7817711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 439
Target Start/End: Original strand, 10700078 - 10700175
Alignment:
Q  340 tgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagaga 439  Q
    |||||||||||||||||| |||||| |||||||| |  |||| |||||| |||| |||||||||  |||| ||  |||||| ||||||||||||||||||    
T  10700078 tgtgttatttgaacaatcatttgattgacaacttttgggacaaccataattttataaagaaaaa--aagtcttgacacaaaaatcaaagcaatagagaga 10700175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 9788744 - 9788849
Alignment:
Q  19 tgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaattacatatgagagagtaa 118  Q
    |||| ||||||| | ||| ||||| ||||||||| || |||| ||||| ||||||| ||| | |||||||  |||| ||||||||| |||||||||||||    
T  9788744 tgtgatgaaattttaagactcataagtaaaaatgtttcctttagatgataatttagaaatctctactatgattatgtttcaattacctatgagagagtaa 9788843  T
Q  119 gtcccc 124  Q
     |||||    
T  9788844 ctcccc 9788849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 445
Target Start/End: Complemental strand, 3062508 - 3062405
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagat 440  Q
    ||||||||||||||| | |||| | |||||||||  ||||| |||||| |||||||||||||| || || || ||||||| | |||| ||||||||||||    
T  3062508 gtgttatttgaacaaccatttggttgacaacttacatgacaaccataa-tttacaaagaaaaaataggtatttgcacaaaaaccaaaacaatagagagat 3062410  T
Q  441 gaagt 445  Q
     ||||    
T  3062409 aaagt 3062405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 445
Target Start/End: Complemental strand, 4225937 - 4225827
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    |||| ||||||||||||||||| ||||    |||||||||||||||| |||||  |||| |||||||||||| || ||  ||| || | |||| ||||||    
T  4225937 agagatgtgttatttgaacaattttttaggtgacaacttatttgacaaccatagttttataaagaaaaagtaggtattgacacgaaaaccaaaacaatag 4225838  T
Q  435 agagatgaagt 445  Q
    |||||| ||||    
T  4225837 agagataaagt 4225827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 433
Target Start/End: Complemental strand, 41458780 - 41458683
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaata 433  Q
    ||||| ||||||||||||||| | |||| | |||||||||  ||||| |||||| |||| |||||||||||| || || ||||||| |||||| |||||    
T  41458780 agaggagtgttatttgaacaaccatttggttgacaacttacatgacaaccataa-tttataaagaaaaagtaggtatttgcacaaaaatcaaaacaata 41458683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 24234920 - 24234988
Alignment:
Q  11 caaaggtatgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaata 79  Q
    |||||||||||||||||||| | |||||||||  ||||| ||||||||||  ||| |||| ||||||||    
T  24234920 caaaggtatgtggtgaaattttaagattcatatataaaagtggtttctttatatggcaatgtaggaata 24234988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 403
Target Start/End: Original strand, 19785964 - 19786033
Alignment:
Q  333 aaagaggtgtgttatttgaacaatc-ttttgatagacaacttatttgacagccataaatttacaaagaaaaa 403  Q
    ||||||| |||||||||||||||||  |||||| |||||||||||||||| |||| | ||||||||||||||    
T  19785964 aaagaggagtgttatttgaacaatcaatttgat-gacaacttatttgacaaccat-attttacaaagaaaaa 19786033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 445
Target Start/End: Complemental strand, 42926292 - 42926214
Alignment:
Q  366 gacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagatgaagt 445  Q
    ||||| |||| ||||| |||||| |||||||||||||||||||| || | ||| | |||||| |||||||||||| ||||    
T  42926292 gacaatttatgtgacaaccataa-tttacaaagaaaaagtaagtatttgtacagaaatcaaaacaatagagagataaagt 42926214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 406
Target Start/End: Original strand, 26041205 - 26041277
Alignment:
Q  333 aaagaggtgtgttatttgaacaatct-tttgatagacaacttatttgacagccataaatttacaaagaaaaagta 406  Q
    ||||||| || ||||||||||||||  |||| | |||||||||||||||| |||| |||||||||||||||||||    
T  26041205 aaagaggagtattatttgaacaatcaatttggt-gacaacttatttgacaaccat-aatttacaaagaaaaagta 26041277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 445
Target Start/End: Complemental strand, 28036928 - 28036819
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    ||||| |||||| |||||||| | |||| | |||||||| |  |||| |||||| ||||||||||||||||  || || |||| || | |||||||||||    
T  28036928 agaggagtgttaattgaacaaccatttggttgacaacttttgggacaaccataa-tttacaaagaaaaagttggtatttgcacgaaaaccaaagcaatag 28036830  T
Q  435 agagatgaagt 445  Q
    |||||| ||||    
T  28036829 agagataaagt 28036819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 402
Target Start/End: Complemental strand, 35600855 - 35600789
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaa 402  Q
    |||||||||||||||||||| | |||||  |||||||| | ||||| |||  |||||||||||||||    
T  35600855 gaggtgtgttatttgaacaaccatttgagtgacaacttttgtgacaaccactaatttacaaagaaaa 35600789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 445
Target Start/End: Original strand, 6109862 - 6109967
Alignment:
Q  340 tgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagaga 439  Q
    ||||| |||||||||||| |||  | ||||||||||| ||||  |||| ||||||||||||||| || || ||  ||| || | |||| |||||||||||    
T  6109862 tgtgtgatttgaacaatcattttgttgacaacttattggacaatcatagatttacaaagaaaaattatgtattgacacgaaaaccaaaacaatagagaga 6109961  T
Q  440 tgaagt 445  Q
    | ||||    
T  6109962 taaagt 6109967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 445
Target Start/End: Original strand, 35588830 - 35588887
Alignment:
Q  388 aatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagatgaagt 445  Q
    ||||||||||||||||||  || || |||| || ||||||||||||||||||| ||||    
T  35588830 aatttacaaagaaaaagttggtatttgcacgaaaatcaaagcaatagagagataaagt 35588887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 445
Target Start/End: Original strand, 10055525 - 10055628
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagat 440  Q
    ||||||||| ||||| | |||| | ||||||||||  |||| | |||| ||||||||||||||||  || || | ||||| | |||||||||||||||||    
T  10055525 gtgttatttaaacaaccatttggttgacaacttatgggacaactataa-tttacaaagaaaaagttggtatttgtacaaaaaccaaagcaatagagagat 10055623  T
Q  441 gaagt 445  Q
     ||||    
T  10055624 aaagt 10055628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 406
Target Start/End: Complemental strand, 15565089 - 15565025
Alignment:
Q  342 tgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagta 406  Q
    |||||||| ||||| | |||| | |||||||||||||||| || ||  |||||||||||||||||    
T  15565089 tgttatttaaacaaccatttggttgacaacttatttgacaaccttagttttacaaagaaaaagta 15565025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 47078171 - 47078210
Alignment:
Q  367 acaacttatttgacagccataaatttacaaagaaaaagtaa 407  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  47078171 acaacttatttgacaacca-aaatttacaaagaaaaagtaa 47078210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 336 - 445
Target Start/End: Complemental strand, 46281620 - 46281511
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||||||||||||||||||| | ||||||||||||| ||||||||| |||||||||||||||| ||||||| ||||| |||  || ||||||||||||||    
T  46281620 gaggtgtgttatttgaacaaccatttgatagacaacatatttgacaaccataaatttacaaaggaaaagtaggttttggcatgaaaatcaaagcaataga 46281521  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  46281520 gagataaagt 46281511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 445
Target Start/End: Complemental strand, 35137027 - 35136919
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||||||||||| |||| | ||||| || |  |||| |||||| ||||||||||||||||  || || ||||||| ||||||||||||||    
T  35137027 gaggagtgttatttgaacaatcatttggttgacaatttttaggacaaccataa-tttacaaagaaaaagtttgtatttgcacaaaaatcaaagcaataga 35136929  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  35136928 gagataaagt 35136919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 332 - 406
Target Start/End: Original strand, 51436654 - 51436728
Alignment:
Q  332 caaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagta 406  Q
    |||||| || |||||||||||||||  |||| | |||||||||| ||||| ||||| ||||||||||||||||||    
T  51436654 caaagatgtatgttatttgaacaataatttggttgacaacttatatgacaaccatagatttacaaagaaaaagta 51436728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 445
Target Start/End: Complemental strand, 47721592 - 47721484
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||| ||||| | |||  | ||||||||||  |||| |||||| |||||||||||||||||||| ||  ||| || ||||||||||||||    
T  47721592 gaggagtgttatttaaacaaccatttagtggacaacttatgggacaaccataa-tttacaaagaaaaagtaagtattgacacgaaaatcaaagcaataga 47721494  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  47721493 gagataaagt 47721484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 445
Target Start/End: Complemental strand, 47728584 - 47728476
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||| ||||| | |||  | ||||||||||  |||| |||||| |||||||||||||||||||| ||  ||| || ||||||||||||||    
T  47728584 gaggagtgttatttaaacaaccatttagtggacaacttatgggacaaccataa-tttacaaagaaaaagtaagtattgacacgaaaatcaaagcaataga 47728486  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  47728485 gagataaagt 47728476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 48220032 - 48220140
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||||||||||| |||| | ||||||||||  || |||||| ||| | ||||||||||||  || || ||||||| ||||||| ||||||    
T  48220032 gaggagtgttatttgaacaatcatttggttgacaacttatgggaaagccat-aatcttcaaagaaaaagttggtatttgcacaaaaatcaaagaaataga 48220130  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  48220131 gagataaagt 48220140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 445
Target Start/End: Original strand, 33358051 - 33358154
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagat 440  Q
    ||||||||||||||| | |||| | |||||||||| ||||| |||| ||||||||||||||||||  || || |||| || |||||| |||| |||||||    
T  33358051 gtgttatttgaacaaccatttggttgacaacttatgtgacaaccat-aatttacaaagaaaaagtgggtatttgcacgaaaatcaaatcaattgagagat 33358149  T
Q  441 gaagt 445  Q
     ||||    
T  33358150 aaagt 33358154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 25784403 - 25784284
Alignment:
Q  12 aaaggtatgtggtgaaattctgagattcataggtaaaaatggtttcttttgatgacaatttaggaatatttactatgtctatggttcaattacatatgag 111  Q
    |||||||||||||  ||||   ||||| ||| |||||| ||||| |||| ||||||||||||||||| | | |||||| |||| |||||||||  || ||    
T  25784403 aaaggtatgtggtagaatttaaagattgataagtaaaagtggttcctttagatgacaatttaggaatttcttctatgtttatgtttcaattaccgatcag 25784304  T
Q  112 agagtaagtccccgccttaa 131  Q
    || ||||||||  |||||||    
T  25784303 agtgtaagtccatgccttaa 25784284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 36976880 - 36976830
Alignment:
Q  91 tatggttcaattacatatgagagagtaagtccccgccttaa-taactatcc 140  Q
    |||| ||||||||||| |||||||||||||||||||||||| |||||||||    
T  36976880 tatgtttcaattacatgtgagagagtaagtccccgccttaactaactatcc 36976830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 41507086 - 41507151
Alignment:
Q  340 tgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagta 406  Q
    |||||||||||||||| | |||| | |||||||||||||||| | || |||||||||||||||||||    
T  41507086 tgtgttatttgaacaaccatttggttgacaacttatttgacaactat-aatttacaaagaaaaagta 41507151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 445
Target Start/End: Original strand, 50328028 - 50328137
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    ||||| ||||||||||||||| | |||| | |||||||| |  |||| |||||| ||||||||||||||||  || || |||| || | |||||||||||    
T  50328028 agaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataa-tttacaaagaaaaagttggtatttgcacgaaaaccaaagcaatag 50328126  T
Q  435 agagatgaagt 445  Q
    |||||| ||||    
T  50328127 agagataaagt 50328137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 445
Target Start/End: Original strand, 50775043 - 50775152
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    |||| |||||||||||||| | | |||||| ||||| || | ||||| |||||| ||||||||||||||| | || ||  |||||| | |||||||||||    
T  50775043 agagttgtgttatttgaacgaccatttgattgacaaattttgtgacaaccataattttacaaagaaaaag-atgtgttgacacaaaaaccaaagcaatag 50775141  T
Q  435 agagatgaagt 445  Q
    |||||| ||||    
T  50775142 agagataaagt 50775152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 445
Target Start/End: Original strand, 50881997 - 50882106
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    ||||| ||||||||||||||| | |||||| ||||| |||| |||||  ||| |||||| ||||||||| | ||| || |||| || ||||||| |||||    
T  50881997 agaggagtgttatttgaacaaccatttgattgacaatttatgtgacaatcat-aatttataaagaaaaaatgagtatttgcacgaaaatcaaagtaatag 50882095  T
Q  435 agagatgaagt 445  Q
    |||||| ||||    
T  50882096 agagataaagt 50882106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 445
Target Start/End: Complemental strand, 8200258 - 8200150
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||||||||  |||||| | ||||||||||  |||| |||||| ||||||||||||||||| ||  | |||| || | ||||||||||||    
T  8200258 gaggagtgttatttgaacagccttttggttgacaacttatgggacaaccataa-tttacaaagaaaaagtacgtagttgcacgaaaaccaaagcaataga 8200160  T
Q  436 gagatgaagt 445  Q
    | ||| ||||    
T  8200159 gggataaagt 8200150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 10889934 - 10890042
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| |||||||||||||||   |||| | |||||||| | ||||| |||||| ||||||||||||||||  || |  |||| || ||||||||||||||    
T  10889934 gaggagtgttatttgaacaactatttggttgacaacttttgtgacaaccataa-tttacaaagaaaaagttggtatgtgcacgaaaatcaaagcaataga 10890032  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  10890033 gagataaagt 10890042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 43769796 - 43769703
Alignment:
Q  342 tgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    ||||||||||| |||| |||| | ||||||||||  |||| |||| |||||| ||||||||||||||| ||  || ||| | ||||||||||||    
T  43769796 tgttatttgaataatcatttggttgacaacttatgagacaaccattaatttataaagaaaaagtaagtattttcagaaaaaccaaagcaataga 43769703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 440
Target Start/End: Complemental strand, 45417944 - 45417852
Alignment:
Q  347 tttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagat 440  Q
    ||||||||| | |||||| |||||||||| ||||| |||||| |||| ||||||||| || || || |||| || |||||| ||||||||||||    
T  45417944 tttgaacaaccatttgattgacaacttatgtgacaaccataa-tttataaagaaaaaatatgtatttgcacgaaaatcaaaacaatagagagat 45417852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 445
Target Start/End: Complemental strand, 48326150 - 48326043
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||||||||| | |||| | |||||||| || |||| |||||| ||||||||||||||||  || || | || || ||||||||||||||    
T  48326150 gaggagtgttatttgaacaaccatttggttgacaactt-ttggacaaccataa-tttacaaagaaaaagttggtatttgtacgaaaatcaaagcaataga 48326053  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  48326052 gagataaagt 48326043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 439
Target Start/End: Complemental strand, 11597821 - 11597718
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    ||||||||||||||||||||  | |||| | ||||||||||  |||| ||||| |||||||||| |||||||  | ||||||| || | |||| ||||||    
T  11597821 agaggtgtgttatttgaacatccatttgcttgacaacttatgggacaaccatagatttacaaag-aaaagtagatattagcacgaaaaccaaaacaatag 11597723  T
Q  435 agaga 439  Q
    |||||    
T  11597722 agaga 11597718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 445
Target Start/End: Original strand, 40316829 - 40316940
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaat 432  Q
    ||||||| ||||||||||||||| | |||| | |||||||| |  |||| |||||| |||| |||||||||||  || || |||| || | |||||||||    
T  40316829 aaagaggagtgttatttgaacaaccatttggttgacaacttttaggacaaccataa-tttataaagaaaaagttggtatttgcacgaaaaccaaagcaat 40316927  T
Q  433 agagagatgaagt 445  Q
    |||||||| ||||    
T  40316928 agagagataaagt 40316940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 445
Target Start/End: Complemental strand, 48625061 - 48624951
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaat 432  Q
    ||||||| |||||||||||| |||  |||||| ||||||||||   ||| |||||| |||| |||||||||||| || || |||  || |||||||||||    
T  48625061 aaagaggagtgttatttgaa-aattatttgattgacaacttatgaaacaaccataa-tttataaagaaaaagtatgtatttgcatgaaaatcaaagcaat 48624964  T
Q  433 agagagatgaagt 445  Q
    |||||||| ||||    
T  48624963 agagagataaagt 48624951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 445
Target Start/End: Original strand, 36577298 - 36577408
Alignment:
Q  334 aagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaata 433  Q
    |||||| ||||||||||||||| | |||| | |||||||| |  |||| |||||| |||| |||||||||||  || || |||| || ||||||||||||    
T  36577298 aagaggagtgttatttgaacaaccatttggttgacaacttttaggacaaccataa-tttataaagaaaaagttggtatttgcacgaaaatcaaagcaata 36577396  T
Q  434 gagagatgaagt 445  Q
     |||||| ||||    
T  36577397 aagagataaagt 36577408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 4629640 - 4629706
Alignment:
Q  340 tgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagta 406  Q
    ||||||||||||||||   || ||| |||||||||||||||| ||| |  |||||||||||||||||    
T  4629640 tgtgttatttgaacaactattagattgacaacttatttgacaaccacatctttacaaagaaaaagta 4629706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 445
Target Start/End: Complemental strand, 50824925 - 50824816
Alignment:
Q  335 agaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatag 434  Q
    ||||| ||||||||||||||| | |||| | ||||||||||   ||| |||| ||||||||||||||||||| || ||  ||  || | |||||||||||    
T  50824925 agaggagtgttatttgaacaaccatttggtggacaacttatgatacaaccat-aatttacaaagaaaaagtaggtattgacatgaaaaccaaagcaatag 50824827  T
Q  435 agagatgaagt 445  Q
    |||||| ||||    
T  50824826 agagataaagt 50824816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 445
Target Start/End: Complemental strand, 13489845 - 13489737
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| |||||||||||||||   |||| | |||||||| |  |||| |||||| ||||||||||||||||  || || |||| || | ||||||||||||    
T  13489845 gaggagtgttatttgaacaactatttggttgacaacttctgggacaaccataa-tttacaaagaaaaagttggtatttgcacgaaaaccaaagcaataga 13489747  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  13489746 gagataaagt 13489737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 445
Target Start/End: Complemental strand, 18336278 - 18336221
Alignment:
Q  388 aatttacaaagaaaaagtaagttttagcacaaatatcaaagcaatagagagatgaagt 445  Q
    ||||||||||||||| ||| || |  ||||||| ||||||||||||||||||| ||||    
T  18336278 aatttacaaagaaaaggtaggtatctgcacaaaaatcaaagcaatagagagataaagt 18336221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 445
Target Start/End: Complemental strand, 52362665 - 52362557
Alignment:
Q  336 gaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaataga 435  Q
    |||| ||||||||||||||| | |||| | |||||||| |  |||| |||||| |||| |||||||||||  || || |||| || | ||||||||||||    
T  52362665 gaggagtgttatttgaacaaccatttggttgacaacttttaggacaaccataa-tttataaagaaaaagttggtatttgcacgaaaaccaaagcaataga 52362567  T
Q  436 gagatgaagt 445  Q
    ||||| ||||    
T  52362566 gagataaagt 52362557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 2211085 - 2211144
Alignment:
Q  341 gtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaa 401  Q
    ||||||||||||||| | |||||| ||||||||||  ||||||||| | ||||||||||||    
T  2211085 gtgttatttgaacaaccgtttgattgacaacttatgagacagccat-agtttacaaagaaa 2211144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 403
Target Start/End: Original strand, 4514337 - 4514408
Alignment:
Q  331 acaaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaa 403  Q
    ||||||||| |||||||||||||||||  || |  ||||||||||||||||  ||| | ||||||||||||||    
T  4514337 acaaagaggagtgttatttgaacaatcaatttagtgacaacttatttgacaaacat-attttacaaagaaaaa 4514408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 47214360 - 47214321
Alignment:
Q  366 gacaacttatttgacagccataaatttacaaagaaaaagta 406  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  47214360 gacaacttatttgacaacca-aaatttacaaagaaaaagta 47214321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 406
Target Start/End: Original strand, 51286286 - 51286325
Alignment:
Q  366 gacaacttatttgacagccataaatttacaaagaaaaagta 406  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  51286286 gacaacttatttgacaacca-aaatttacaaagaaaaagta 51286325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 404
Target Start/End: Original strand, 51571238 - 51571302
Alignment:
Q  340 tgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaag 404  Q
    |||||||||||||||| | |||||| ||||| || |  |||| |||||| |||||||||||||||    
T  51571238 tgtgttatttgaacaaccatttgattgacaatttttgggacaaccataattttacaaagaaaaag 51571302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 445
Target Start/End: Complemental strand, 11150 - 11039
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaat 432  Q
    ||||||| ||||||||||||||| |||||| | |||||||||| |||||  ||| ||||||||||||||||||  || || |||| || |||||| ||||    
T  11150 aaagaggagtgttatttgaacaaccttttggttgacaacttatgtgacaatcat-aatttacaaagaaaaagtgggtatttgcacgaaaatcaaaacaat 11052  T
Q  433 agagagatgaagt 445  Q
    |||||||| ||||    
T  11051 agagagataaagt 11039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 445
Target Start/End: Complemental strand, 38611 - 38500
Alignment:
Q  333 aaagaggtgtgttatttgaacaatcttttgatagacaacttatttgacagccataaatttacaaagaaaaagtaagttttagcacaaatatcaaagcaat 432  Q
    ||||||| ||||||||||||||| | |||  | |||||||| |  |||| | || ||||||||||||||||||  || || |||| || | |||||||||    
T  38611 aaagaggagtgttatttgaacaaccatttagttgacaacttttgggacaactat-aatttacaaagaaaaagttggtattcgcacgaaaaccaaagcaat 38513  T
Q  433 agagagatgaagt 445  Q
    |||||||| ||||    
T  38512 agagagataaagt 38500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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