View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3565_high_4 (Length: 386)
Name: NF3565_high_4
Description: NF3565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3565_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 29050449 - 29050816
Alignment:
| Q |
1 |
atgggaatgtgatgcacttgataaagatcaacacaccatgagttgactcttgttgacccacttggaaaaagaccagcattgctcatgttgtaaaaagagt |
100 |
Q |
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| T |
29050449 |
atgggaatgtgatgcacttgataaagatcaacacaccatgagttgactcttgttgacccacttggaaaaagaccagcattgctcatgttgtaaaaagagt |
29050548 |
T |
|
| Q |
101 |
gaaaaaaggttctgtgtatttggaaggattgtgacaatgtgttaatgtgcaactcagataccagacaacatatccttaactatgttgtctctcaagttca |
200 |
Q |
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| T |
29050549 |
gaaaaaaggttctgtgtatttggaaggattgtgacaatgtgttaatgtgcaactcagataccagacaacatatccttaactatgttgtctctcaagttca |
29050648 |
T |
|
| Q |
201 |
cttaacgaatgtacatgaaacaactttggtccactgaaactagttgtatttgtatcattattacgacattcaatcattgatgatgaaatgcacatgttca |
300 |
Q |
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| T |
29050649 |
cttaacgaatgtacatgaaacaactttggtccactgaaagtagttgtatttgtatcattattacgacattcgatcattgatgatgaaatgcacatgttca |
29050748 |
T |
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| Q |
301 |
atcatgtaactttatggataaaaagccttgtttgtgtaacaactttgtctacgaggaaattcctgttt |
368 |
Q |
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| T |
29050749 |
atcatgtaactttatggataaaaagccttgtttgtgtaacaactttgtctgcgaggaaattcctgttt |
29050816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 29053637 - 29053964
Alignment:
| Q |
1 |
atgggaatgtgatgcacttgataaagatcaacacaccatgagttgactcttgttgacccacttggaaaaagaccagcattgctcatgttgtaaaaagagt |
100 |
Q |
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|||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| |
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| T |
29053637 |
atgggaatttgatgcacttgataaagatcaactccccatgaattgactcttgttgacccactgggaaaaagaccaacattactcatgttgtaaaaagagt |
29053736 |
T |
|
| Q |
101 |
gaaaaaag-gttctgtgtatttggaaggattgtgacaatgtgttaatgtgcaactcagataccagacaacatatccttaactatgttgtctctcaagttc |
199 |
Q |
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||||||| ||| |||||||| ||||||| ||||||| ||| | ||| |||||| |||||||||||| |||||||||||| |||||||||||||||| |
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| T |
29053737 |
gaaaaaaatgttatgtgtattaggaaggagtgtgacactgt----acgtgtaactcatataccagacaacttatccttaactaggttgtctctcaagttc |
29053832 |
T |
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| Q |
200 |
acttaacgaatgtacatgaaacaactttggtccactgaaactagttgtatttgtatcattattacgacattcaatcattgatgatgaaatgcacatgttc |
299 |
Q |
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| T |
29053833 |
agttaacgaatgtacatgaaaccgttttggtccactaaaaggagttgtatttgtatcattattacggcgttcaatcattgatgattaaatgcagatgttc |
29053932 |
T |
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| Q |
300 |
aatcatgtaactttatggataaaaagccttgt |
331 |
Q |
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| T |
29053933 |
attcatgtaactctccggataaaaagccttgt |
29053964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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