View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3565_high_5 (Length: 363)
Name: NF3565_high_5
Description: NF3565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3565_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 52263210 - 52262879
Alignment:
| Q |
16 |
aaacctttgagtttatatgcagagaacttgattcaacagtcaccaagaaaaacacgacgctccgcgacgctgttcctctccggcagcgagtggcggcttg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
52263210 |
aaacctttgagtttatatgcagagaacttgattcaactgtcaccaagaaaaacacgacgctccgcgacgctattcctctccggcagcgagtagcggcttg |
52263111 |
T |
|
| Q |
116 |
tatttggagacttgccacaggtgatccttataggcttgtttcagaacgatttggtttgggtttatccacatgtcacaagctcgttctagatgtttgctct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52263110 |
tatttggagacttgccacaggtgatccttataggcttgtttcagaacgatttggtttgggtttatccacatgtcacaagctcgttctagatgtttgctct |
52263011 |
T |
|
| Q |
216 |
gcaataaaaaccgttcttatgccaaagttcattctatggccagatgaaaataacatgatattggttaaacaagagtttgagggtctttctggaataccaa |
315 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52263010 |
gaaataaaaaccgttcttatgccaaagttcattctatggccagatgaaaataacatgatattggttaaacaagagtttgagggtctttctggaataccaa |
52262911 |
T |
|
| Q |
316 |
atgttggtggttcagtttatactactcatatt |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
52262910 |
atgttggtggttcagtttatactactcatatt |
52262879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 96 - 347
Target Start/End: Complemental strand, 52251485 - 52251234
Alignment:
| Q |
96 |
cggcagcgagtggcggcttgtatttggagacttgccacaggtgatccttataggcttgtttcagaacgatttggtttgggtttatccacatgtcacaagc |
195 |
Q |
| |
|
|||||||| ||||||| |||||| |||||||| ||||| ||||||||| ||||| |||||| | | || ||||||||| ||||||| ||||| |||| |
|
|
| T |
52251485 |
cggcagcgcgtggcggtttgtatctggagactcgccaccggtgatcctctaaggctggtttcaaagaggttcggtttgggtatatccacctgtcataagc |
52251386 |
T |
|
| Q |
196 |
tcgttctagatgtttgctctgcaataaaaaccgttcttatgccaaagttcattctatggccagatgaaaataacatgatattggttaaacaagagtttga |
295 |
Q |
| |
|
| ||||| || ||||| ||||||| || | ||||||||||||||||| ||| ||||| ||||||||||| |||| ||| |||||||||||||||| |
|
|
| T |
52251385 |
tggttcttgaggtttgtgctgcaatcaagaaagttcttatgccaaagtttattacttggcctgatgaaaataagatgaatttgattaaacaagagtttga |
52251286 |
T |
|
| Q |
296 |
gggtctttctggaataccaaatgttggtggttcagtttatactactcatatt |
347 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| | ||||| || |||||| |
|
|
| T |
52251285 |
gggtctttttggaatgccaaatgttggtggttcaatgtataccacacatatt |
52251234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University