View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3565_low_1 (Length: 516)
Name: NF3565_low_1
Description: NF3565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3565_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Original strand, 43610285 - 43610696
Alignment:
| Q |
7 |
tcgaagaatatggttggatattcgaatcaacttcaactttaaatttctcgcctaagcccaaatcctcattaggcttcaccacaaattagatgccgaaata |
106 |
Q |
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| T |
43610285 |
tcgaacaatatggttggatatccaaatcaactttaacttcaaatttctcgcctaagcccaaatcctcattaggcttcaccacaaattagatgttgaaata |
43610384 |
T |
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| Q |
107 |
cgcatgtaacctcatcggcaagtaatcatatgcatcaggagaaacatgtacacactctataataaaatcctctcactcatctcattcataagctaatttg |
206 |
Q |
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| T |
43610385 |
cacatgtaacctcatcggcaagtaatcatatgcatcaggagaaacatgtacacactcta--ataaaatcctctctctcatctcattcataagctaatttg |
43610482 |
T |
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| Q |
207 |
agtgtctaagttattgcacgttccactctctccaatcattgtcctactcacaccgatgagctcagcttaactatcgtcctacgccgtgcactgcatcaac |
306 |
Q |
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| T |
43610483 |
agtgtctaagtgattgcacattccactctctccaatcgttgtcctactcacaccgatgagctcagcttaactgtcgtcctacgccgtgcaccgcatcaac |
43610582 |
T |
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| Q |
307 |
tctgatcatcgatattgatctacttcagatcatgagctcgagaacttcccatccaacacctaaagaaaaactcaaccttctcgaacagtagcaaggttaa |
406 |
Q |
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| T |
43610583 |
tctgatcatcgatattgatctacttcagatcatgagctcgagaacttcccatccaacacctaaagaaaaactcgaccttctcgaacagtagcaaggttaa |
43610682 |
T |
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| Q |
407 |
aagaagaagtccta |
420 |
Q |
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| T |
43610683 |
aagaagaagtccta |
43610696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 417 - 497
Target Start/End: Original strand, 43610804 - 43610884
Alignment:
| Q |
417 |
cctacatccttaaaaccttcattagcaagtcaatccctcaaacctggagtgcaacaaaacttaagaagtactataaagtta |
497 |
Q |
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| T |
43610804 |
cctacatccttaaaaccttcctcagcaagtcaatccctcaaacctggattgcaacaaaacttaagaagtactataaagtta |
43610884 |
T |
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