View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3565_low_10 (Length: 271)
Name: NF3565_low_10
Description: NF3565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3565_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 25658919 - 25659158
Alignment:
| Q |
18 |
caccaattacccgcgttttgatttcactgcaagcaacttccgatgaacagcgccgcttattctgccggtgtctcaccgccgaatgaggccgatatcgatt |
117 |
Q |
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| T |
25658919 |
caccaattacacgcgttttgatttcattgcaa----cttccgatgaacagcgccgcttattctgccggagtctcgccgtcgaatgaggcggatatcgatt |
25659014 |
T |
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| Q |
118 |
gggagatgcgtcccggcggtatgttcgtacagagacgcgaatcaggtgacgatgatcataccgatggacccatgatcaacatcagtgttgcatatggttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
25659015 |
gggagatgcgtcccggcggtatgttcgtacagagacgcgaatcaggtgacgatgatcataccgacggaccgatgatcaacatcagtgttgcatatggttc |
25659114 |
T |
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| Q |
218 |
ttctcagcatgaagtttatcttccagctcaatcctctttctgtg |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25659115 |
ttctcagcatgaagtttatcttccagctcaatcctctttctgtg |
25659158 |
T |
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