View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3565_low_15 (Length: 250)

Name: NF3565_low_15
Description: NF3565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3565_low_15
NF3565_low_15
[»] chr4 (6 HSPs)
chr4 (113-244)||(9363061-9363193)
chr4 (1-49)||(9363258-9363306)
chr4 (3-49)||(25505321-25505367)
chr4 (3-49)||(36193334-36193380)
chr4 (1-49)||(12885671-12885719)
chr4 (3-49)||(30563692-30563738)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-49)||(2298-2346)
[»] chr7 (2 HSPs)
chr7 (1-49)||(7738809-7738857)
chr7 (3-49)||(24504386-24504431)
[»] chr6 (3 HSPs)
chr6 (1-49)||(33106041-33106089)
chr6 (3-47)||(24209225-24209269)
chr6 (1-49)||(2603793-2603841)
[»] chr5 (3 HSPs)
chr5 (1-49)||(37941245-37941293)
chr5 (5-49)||(41732264-41732308)
chr5 (3-49)||(28440852-28440898)
[»] chr2 (8 HSPs)
chr2 (1-49)||(11033121-11033169)
chr2 (3-49)||(8267472-8267518)
chr2 (3-49)||(39303510-39303556)
chr2 (1-49)||(36076451-36076499)
chr2 (6-49)||(20506687-20506729)
chr2 (6-49)||(36520902-36520944)
chr2 (3-49)||(37605900-37605946)
chr2 (5-42)||(13536968-13537005)
[»] chr1 (6 HSPs)
chr1 (1-49)||(46150019-46150067)
chr1 (3-49)||(3167455-3167501)
chr1 (2-47)||(23288690-23288735)
chr1 (4-49)||(34771296-34771341)
chr1 (3-49)||(4941766-4941812)
chr1 (1-49)||(13269287-13269335)
[»] chr8 (6 HSPs)
chr8 (2-49)||(1214335-1214382)
chr8 (1-49)||(28430031-28430079)
chr8 (1-49)||(42573218-42573266)
chr8 (1-49)||(17844920-17844968)
chr8 (5-49)||(17856875-17856919)
chr8 (1-49)||(25382280-25382328)
[»] chr3 (6 HSPs)
chr3 (3-49)||(26104462-26104508)
chr3 (1-49)||(29019936-29019984)
chr3 (1-49)||(26536471-26536519)
chr3 (3-49)||(53461656-53461702)
chr3 (155-203)||(6133246-6133295)
chr3 (2-34)||(52032844-52032876)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 113 - 244
Target Start/End: Complemental strand, 9363193 - 9363061
Alignment:
Q  113 gcctcttaatctgttgggtcggccctacca-gttgaataatagcctatgagaacatagcttgatttctatcatccaattttcttctcaactgttatcatc 211  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9363193 gcctcttaatctgttgggtcggccctaccaagttaaataatagcctatgagaacatagcttgatttctatcatccaattttcttcttaactgttatcatc 9363094  T
Q  212 caaatattctaaactgaccaacacctttgcttc 244  Q
    ||||||||||||||| ||||||||||| |||||    
T  9363093 caaatattctaaacttaccaacaccttggcttc 9363061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9363306 - 9363258
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9363306 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 9363258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 25505321 - 25505367
Alignment:
Q  3 tcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25505321 tcaattactcttggtcatgaattcaaattttgatctccacaaaattg 25505367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 36193380 - 36193334
Alignment:
Q  3 tcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  36193380 tcaattactcttgatcatgaattcaaattttgatctccacaaaattg 36193334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12885671 - 12885719
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||||||||||||||| | ||||||||||||  |||||||||||||    
T  12885671 cctcaattactcttggtcaaggattcaaattttggactccacaaaattg 12885719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 30563692 - 30563738
Alignment:
Q  3 tcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    |||||| |||||| ||||||||||| |||||| ||||||||||||||    
T  30563692 tcaatttctcttgctcatgaattcagattttggtctccacaaaattg 30563738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2298 - 2346
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||    
T  2298 cctcaattactcttggtcatgaattcaaattttgatctctataaaattg 2346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7738857 - 7738809
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  7738857 cctcaattactcttggtcatgaattcaaattttggtttccacaaaattg 7738809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 24504431 - 24504386
Alignment:
Q  3 tcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||||    
T  24504431 tcaattattcttg-tcatgaattcaaattttggtctccacaaaattg 24504386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33106041 - 33106089
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  33106041 cctcaattactctaggtcatgaattcaaattttggtctccacaaaattg 33106089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 24209269 - 24209225
Alignment:
Q  3 tcaattactcttggtcatgaattcaaattttgatctccacaaaat 47  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||    
T  24209269 tcaattactattggtcatgaattcaaattttaatctcaacaaaat 24209225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2603841 - 2603793
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    |||| |||||| ||| |||||||||||||||| | ||||||||||||||    
T  2603841 cctctattacttttgatcatgaattcaaatttcggtctccacaaaattg 2603793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37941293 - 37941245
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||    
T  37941293 cctcaattactcttggtcatgaattcaaattttggtctcaacaaaattg 37941245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 41732308 - 41732264
Alignment:
Q  5 aattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  41732308 aattactcttggtcatgaattcaaattttgatctccataaaattg 41732264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 28440852 - 28440898
Alignment:
Q  3 tcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||    
T  28440852 tcaattactcttggtcataaattcaaattttaatctccacaaaattg 28440898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11033169 - 11033121
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  11033169 cctcaattactcttgatcatgaattcaaattttggtctccacaaaattg 11033121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 8267472 - 8267518
Alignment:
Q  3 tcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  8267472 tcaattactcttggtcatgaattcaaatttaggtctccacaaaattg 8267518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 39303510 - 39303556
Alignment:
Q  3 tcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  39303510 tcaattactctaggtcatcaattcaaattttgatctccacaaaattg 39303556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36076451 - 36076499
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  36076451 cctcagttactcttggtcttgaattcaaattttgatctccacacaattg 36076499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 20506687 - 20506729
Alignment:
Q  6 attactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    |||||||||| |||||||||||||||||| ||||||||||||||    
T  20506687 attactcttg-tcatgaattcaaattttggtctccacaaaattg 20506729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 36520944 - 36520902
Alignment:
Q  6 attactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    |||||||||| |||||||||||||||||| ||||||||||||||    
T  36520944 attactcttg-tcatgaattcaaattttggtctccacaaaattg 36520902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 37605946 - 37605900
Alignment:
Q  3 tcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    |||||||||||| |||||||| |||||||||  ||||||||||||||    
T  37605946 tcaattactcttagtcatgaactcaaattttagtctccacaaaattg 37605900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 13536968 - 13537005
Alignment:
Q  5 aattactcttggtcatgaattcaaattttgatctccac 42  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  13536968 aattactcatggtcatgaattcaaattttggtctccac 13537005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46150019 - 46150067
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  46150019 cctcaattacttttggtcatgaattcaaattttggtctccacaaaattg 46150067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 3167455 - 3167501
Alignment:
Q  3 tcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||    
T  3167455 tcaattactcttagtcatgaattcaaattttggtctccacaaaattg 3167501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 23288690 - 23288735
Alignment:
Q  2 ctcaattactcttggtcatgaattcaaattttgatctccacaaaat 47  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||    
T  23288690 ctcaattactcttgatcatgaattcaaattttgatctctacaaaat 23288735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 34771341 - 34771296
Alignment:
Q  4 caattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||    
T  34771341 caattactcttggtcatgaattcaaattttgttatgcacaaaattg 34771296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 4941766 - 4941812
Alignment:
Q  3 tcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||| |||||||||||||||||||||||  |||||||| |||||    
T  4941766 tcaattattcttggtcatgaattcaaattttagtctccacacaattg 4941812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13269335 - 13269287
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    |||| ||||||||| ||||||||||||||||||  |||||||| |||||    
T  13269335 cctctattactcttcgtcatgaattcaaatttttgtctccacacaattg 13269287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 1214335 - 1214382
Alignment:
Q  2 ctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  1214335 ctcaattactcttggtcatgaattcaatttttggtctccacaaaattg 1214382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28430079 - 28430031
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  28430079 cctcaattactcttggtaatgaatttaaattttggtctccacaaaattg 28430031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42573266 - 42573218
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||||||||||||||||||||| ||||||||||||| | |||||||    
T  42573266 cctcaattactcttggtcatgaatttaaattttgatctctataaaattg 42573218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17844968 - 17844920
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||||||||||| ||||||| | ||||||||||||| |||||||||    
T  17844968 cctcaattactcttgatcatgaaattaaattttgatctctacaaaattg 17844920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 17856875 - 17856919
Alignment:
Q  5 aattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    |||||||||||||||| ||||||||||||| ||| |||| |||||    
T  17856875 aattactcttggtcataaattcaaattttggtcttcacataattg 17856919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25382328 - 25382280
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||||||||||| | |||||||||||||||  ||| ||||||||||    
T  25382328 cctcaattactcttgataatgaattcaaattttagtcttcacaaaattg 25382280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 26104508 - 26104462
Alignment:
Q  3 tcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||    
T  26104508 tcaattactcttggtcatgaattcaaattttaatctccacacaattg 26104462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29019936 - 29019984
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||||||    
T  29019936 cctcaattactcttggtcatgaattcaaatttcggtctcctcaaaattg 29019984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26536471 - 26536519
Alignment:
Q  1 cctcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||||||| |||||||| ||||||| ||||| ||||||||||||||    
T  26536471 cctcaattacttttggtcataaattcaagttttggtctccacaaaattg 26536519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 53461702 - 53461656
Alignment:
Q  3 tcaattactcttggtcatgaattcaaattttgatctccacaaaattg 49  Q
    ||||||| |||||||||| ||||||||||||| | ||||||||||||    
T  53461702 tcaattattcttggtcataaattcaaattttggtatccacaaaattg 53461656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 6133295 - 6133246
Alignment:
Q  155 cctatgagaa-catagcttgatttctatcatccaattttcttctcaactg 203  Q
    |||||||||| |||||||||  |||||||||||||||||||||| |||||    
T  6133295 cctatgagaatcatagcttggattctatcatccaattttcttcttaactg 6133246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 52032876 - 52032844
Alignment:
Q  2 ctcaattactcttggtcatgaattcaaattttg 34  Q
    ||||||| |||||||||||||||||||||||||    
T  52032876 ctcaattgctcttggtcatgaattcaaattttg 52032844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University