View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3565_low_16 (Length: 250)
Name: NF3565_low_16
Description: NF3565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3565_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 39790900 - 39790996
Alignment:
| Q |
137 |
gaagtttctcttagaagcggaaaattaaatataaaattcaaaagaccaaggctcttggccctcaacaaaaacataatcacagtcaatttaaaatgca |
233 |
Q |
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| T |
39790900 |
gaagtttctcttaaaagcggaaatttaaatataaaattccaaagaccaaggctcttggccctcaacaaaaacataatcagagtcaatttaaaatgca |
39790996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 39790636 - 39790726
Alignment:
| Q |
138 |
aagtttctcttagaagcggaaaattaaatataaaattcaaaagaccaaggctcttggccctcaacaaaaacataatcacagtcaatttaaa |
228 |
Q |
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| T |
39790636 |
aagtttctcttagaagcggagaattaaatataaaattcctaagaccaaggctcttggccctcaacagaaacataatcacggtcaatttaaa |
39790726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 39790780 - 39790843
Alignment:
| Q |
16 |
atgtaatattggaaattttgggacattatattaagaaattctgagcgaaaaaagatgaactattg |
80 |
Q |
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| T |
39790780 |
atgtaatattggaaattttggaacattatattaagaaattctgagcg-aaaaagatgaactattg |
39790843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 39790516 - 39790575
Alignment:
| Q |
16 |
atgtaatattggaaattttgggacattatattaagaaattctgagcgaaaaaagatgaacta |
77 |
Q |
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| T |
39790516 |
atgtaacattgggaattttggaacactatattaagaaattctga--gaaaaaagatgaacta |
39790575 |
T |
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