View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3565_low_20 (Length: 237)
Name: NF3565_low_20
Description: NF3565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3565_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 48899802 - 48900007
Alignment:
| Q |
1 |
acatttaagtattaaatgaaccatattaccattgagttggtgatagagttcacatatacaatattgaaaaatactttgtctttactgaatagcttaaact |
100 |
Q |
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| T |
48899802 |
acatttaagtattaaatgaaccatattaccattgagttggtgatagagttcatatatacaatattgaaaaatactttgtctttactgaatagcttaaact |
48899901 |
T |
|
| Q |
101 |
tttggaatagtttgttcatgaagtagtatcacgggctttgatcaagtagttttgagtttgattcttgttgtgtattgtcgattattttctgttgttccag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48899902 |
tttggaatagtttgttcatgaagtagtatcacgggctttgatcaagtagttttgagtttgattcttgttgtgtattgtcgattattttctgttgttccag |
48900001 |
T |
|
| Q |
201 |
gggttc |
206 |
Q |
| |
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|||||| |
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| T |
48900002 |
gggttc |
48900007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 48865432 - 48865512
Alignment:
| Q |
40 |
gtgatagagttcacatatacaatattgaaaaatactt--tgtctttactgaatagcttaaacttttggaatagtttgttca |
118 |
Q |
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| T |
48865432 |
gtgatagagttcatttatacaatattgaaaaacaatttatgtcttcacataatagcttaaacttttggcataatttgttca |
48865512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 48872485 - 48872585
Alignment:
| Q |
40 |
gtgatagagttcacatatacaatattgaaaaatacttt--gtctttactgaatagcttaaacttttggaatagtttgttcatgaagtagtatcacgggct |
137 |
Q |
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| T |
48872485 |
gtgataaagttcatttatacaatattgaaaaacaatttatgtcttcaattattagcttaaacttttggcatagtttgttcacaaaatggtatcacgggct |
48872584 |
T |
|
| Q |
138 |
t |
138 |
Q |
| |
|
| |
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|
| T |
48872585 |
t |
48872585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 48877789 - 48877889
Alignment:
| Q |
40 |
gtgatagagttcacatatacaatattgaaaaatacttt--gtctttactgaatagcttaaacttttggaatagtttgttcatgaagtagtatcacgggct |
137 |
Q |
| |
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|||||| |||||| ||||||||||||||||| | ||| ||||| | | | |||||||||||||||| |||||||||||| || | |||||||||||| |
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| T |
48877789 |
gtgataaagttcatttatacaatattgaaaaacaatttatgtcttcaattattagcttaaacttttggcatagtttgttcacaaaatggtatcacgggct |
48877888 |
T |
|
| Q |
138 |
t |
138 |
Q |
| |
|
| |
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|
| T |
48877889 |
t |
48877889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 11014258 - 11014182
Alignment:
| Q |
99 |
cttttggaatagtttgttcatgaagtagtatcacgggctttgatcaagtagttttgagtttgattcttgttgtgtat |
175 |
Q |
| |
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||||||| |||||||||||||||| | ||||||| |||||||||||||| || | ||||||| |||||||||||||| |
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| T |
11014258 |
cttttggcatagtttgttcatgaaatggtatcacaggctttgatcaagtggtgtagagtttggttcttgttgtgtat |
11014182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 11014358 - 11014261
Alignment:
| Q |
37 |
ttggtgatagagttcacatatacaatattgaaaaatacttt--gtctttactgaatagcttaaacttttggaatagtttgttcatgaagtagtatcac |
132 |
Q |
| |
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||||||||| |||||| |||||||||||||||||| ||| ||||| ||| |||||||||||||| | | |||||||||| ||||| | ||||||| |
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| T |
11014358 |
ttggtgatatagttcatttatacaatattgaaaaattatttatgtcttcacttaatagcttaaacttgtagcatagtttgttgatgaaatggtatcac |
11014261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 11004725 - 11004677
Alignment:
| Q |
99 |
cttttggaatagtttgttcatgaagtagtatcacgggctttgatcaagt |
147 |
Q |
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||||||| |||||||||||||||| | ||||||| |||||||||||||| |
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| T |
11004725 |
cttttggcatagtttgttcatgaaatggtatcacaggctttgatcaagt |
11004677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 11023586 - 11023531
Alignment:
| Q |
77 |
tgtctttactgaatagcttaaacttttggaatagtttgttcatgaagtagtatcac |
132 |
Q |
| |
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|||||| ||| |||||||||||||||||| |||||||||| ||||| | ||||||| |
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| T |
11023586 |
tgtcttcacttaatagcttaaacttttggcatagtttgttgatgaaatggtatcac |
11023531 |
T |
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