View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3565_low_23 (Length: 226)

Name: NF3565_low_23
Description: NF3565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3565_low_23
NF3565_low_23
[»] chr4 (3 HSPs)
chr4 (14-208)||(9363355-9363547)
chr4 (14-47)||(36193436-36193469)
chr4 (15-47)||(22851334-22851366)
[»] chr1 (1 HSPs)
chr1 (14-48)||(3167365-3167399)
[»] chr6 (1 HSPs)
chr6 (14-46)||(24209325-24209357)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 9363355 - 9363547
Alignment:
Q  14 aatatacttataaccaaattaattttatagaggccnnnnnnnnnncaccaaattttttgaagcataaagcccttgtttgggttgcttgaccgttaggccg 113  Q
    |||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9363355 aatatacttataaccaaattaattttatagaggcctttttttt--caccaaattttttgaagcataaagcccttgtttgggttgcttgaccgttaggccg 9363452  T
Q  114 ggccagtcagcttgtgtttacaaatattgttctcaccaaatgagaataaagtagtaataactaataagcatatatgtgcagtttgatgagtgtaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9363453 ggccagtcagcttgtgtttacaaatattgttctcaccaaatgagaataaagtagtaataactaataagcatatatgtgcagtttgatgagagtaa 9363547  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 36193436 - 36193469
Alignment:
Q  14 aatatacttataaccaaattaattttatagaggc 47  Q
    |||||||||||||||||||||||||| |||||||    
T  36193436 aatatacttataaccaaattaattttttagaggc 36193469  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 22851334 - 22851366
Alignment:
Q  15 atatacttataaccaaattaattttatagaggc 47  Q
    ||||||||||||||||||||||||| |||||||    
T  22851334 atatacttataaccaaattaattttttagaggc 22851366  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 3167399 - 3167365
Alignment:
Q  14 aatatacttataaccaaattaattttatagaggcc 48  Q
    |||||||||||||||||||||||||| ||||||||    
T  3167399 aatatacttataaccaaattaattttttagaggcc 3167365  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 24209325 - 24209357
Alignment:
Q  14 aatatacttataaccaaattaattttatagagg 46  Q
    |||||||||||||||||||||||||| ||||||    
T  24209325 aatatacttataaccaaattaattttttagagg 24209357  T

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