View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3565_low_3 (Length: 439)
Name: NF3565_low_3
Description: NF3565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3565_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Complemental strand, 6379935 - 6379527
Alignment:
| Q |
13 |
aatattaacgttaatggtgatagtgtgtgtccaattcgtaagataaggttgagagatggtgacccaatgtcaccctatctttttattatgtgtgacaaga |
112 |
Q |
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| T |
6379935 |
aatattaacgttaatggtgatagtgtgtgtccaattcgtaagataaggttgagagatggtgacccaatgtcaccctatcttgttattatgtgtgacaaga |
6379836 |
T |
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| Q |
113 |
atttacctgctttacttaaaacaacatgggcaatatacatggtatcaaggtttctagggaagctttatttttcacacaccttttatttattgaaaatttc |
212 |
Q |
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| T |
6379835 |
atttacctgctttacttaaaacaacataggcaatatacatggtatcaag-tttgtacggaagctttatttttcacacaccttttatttattgaaaacttc |
6379737 |
T |
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| Q |
213 |
tttcattattgcagagataccattaatgaatgtactaagttgaatgagatattagaagtgtatgaagaggtgtatggtcaagctatcaatcttcaaaaat |
312 |
Q |
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| T |
6379736 |
tttcattattgcagagataccattaatgaatgtactaagttgaatgagatattacaagtgtatgaaaaggtgtatgatcaagctatcaatcttcaaaaat |
6379637 |
T |
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| Q |
313 |
cataaatcttttttagcacgaattacacctcggtggaagatagataagacattagaaatattctaaatatgttagaaatcttagtgtcgaaaatttgtct |
412 |
Q |
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| T |
6379636 |
cataaatcttttttagcacgaattacacctcggtggaagatagataagacattagaaatattctaaatatgctagaaatcttagtgtcggaaatttgtct |
6379537 |
T |
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| Q |
413 |
gggtctagtg |
422 |
Q |
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| T |
6379536 |
gggtctagtg |
6379527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 129 - 305
Target Start/End: Original strand, 6379072 - 6379248
Alignment:
| Q |
129 |
taaaacaacatgggcaatatacatggtatcaaggtttctagggaagctttatttttcacacaccttttatttattgaaaatttctttcattattgcagag |
228 |
Q |
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| T |
6379072 |
taaaagaacataggcaatatacatggtatcaaggtctctagggaagcttcatttctcacacgccttttatttatagaaaattgttttctttattgcagag |
6379171 |
T |
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| Q |
229 |
ataccattaatgaatgtactaagttgaatgagatattagaagtgtatgaagaggtgtatggtcaagctatcaatctt |
305 |
Q |
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| T |
6379172 |
ataccattaatgaaagtactaagttgaaggagatattacaggtgtatgaagaggtgtatgatcaagctatcaatctt |
6379248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 6377277 - 6377384
Alignment:
| Q |
11 |
agaatattaacgttaatggtgatagtgtgtgtccaat---tcgtaagataaggttgagagatggtgacccaatgtcaccctatctttttattatgtgtga |
107 |
Q |
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| T |
6377277 |
agaatattaacgttaatggtgatagtgtgggtccaatgatttctaagataaggttgagagagggtgactcaatgtcaccctatctttttattatgtgtga |
6377376 |
T |
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| Q |
108 |
caagaatt |
115 |
Q |
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||||||| |
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| T |
6377377 |
taagaatt |
6377384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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