View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3565_low_8 (Length: 340)
Name: NF3565_low_8
Description: NF3565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3565_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 42465196 - 42465453
Alignment:
| Q |
1 |
tcctggatcagtctccatgtaactacatcattggctagcaatactgtttctagacaataacttaacaaaaaatatacaaacaaacaaacatcatcagtaa |
100 |
Q |
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| T |
42465196 |
tcctggatcattctccatgtaactacatcattggctagcaatactgtttctagacaataacttaacaaaaaatatacaaacaaacaaacaacatcagtaa |
42465295 |
T |
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| Q |
101 |
tattgttgactagcaaagatagagacatattcgtgggattcacgaaggcaacttctttcaattagtgacgtgctactgaaattgaaagttatatataaga |
200 |
Q |
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| T |
42465296 |
tattgttgactagcaaagatagagacatattcgtgggattcacgaaggcaacttctttcaattagtgacgtgcaactgaaattgaaagttatatataaga |
42465395 |
T |
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| Q |
201 |
acacatgtacaagtacaaatcaatgagcatccattaatcacattcattaatttataca |
258 |
Q |
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| T |
42465396 |
acacatgtacaagtacaaatcaatgagcatccattaatcacattcattaatttataca |
42465453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 42465427 - 42465492
Alignment:
| Q |
257 |
cattaatcacattcattactttatacagaatcttaacaatggctgcaatctatcaatactgtagct |
322 |
Q |
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| T |
42465427 |
cattaatcacattcattaatttatacagaatcttaacaatggctgcaatctatcaatattgtagct |
42465492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 157 - 255
Target Start/End: Original strand, 23919948 - 23920046
Alignment:
| Q |
157 |
ttcaattagtgacgtgctactgaaattgaaagttatatataagaacacatgtacaagtacaaatcaatgagcatccattaatcacattcattaatttat |
255 |
Q |
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| T |
23919948 |
ttcaattagttacgtgcaactggtattggtggttatatataagaacacacgtacaagtacaaatcaatgagcatccattaatcccattcattaatttat |
23920046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 23920023 - 23920071
Alignment:
| Q |
257 |
cattaatcacattcattactttatacagaatcttaacaatggctgcaat |
305 |
Q |
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| T |
23920023 |
cattaatcccattcattaatttatccagaatcttaacaatggttgcaat |
23920071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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