View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3566_high_11 (Length: 290)

Name: NF3566_high_11
Description: NF3566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3566_high_11
NF3566_high_11
[»] chr4 (4 HSPs)
chr4 (15-84)||(54157870-54157939)
chr4 (97-160)||(54157969-54158032)
chr4 (205-269)||(54158077-54158141)
chr4 (235-269)||(6137250-6137284)
[»] scaffold0086 (1 HSPs)
scaffold0086 (235-269)||(8598-8632)
[»] scaffold0001 (1 HSPs)
scaffold0001 (235-269)||(392396-392430)
[»] chr8 (4 HSPs)
chr8 (235-269)||(12176338-12176372)
chr8 (235-269)||(12420766-12420800)
chr8 (235-269)||(23472505-23472539)
chr8 (235-269)||(39590008-39590042)
[»] chr3 (1 HSPs)
chr3 (235-269)||(21395996-21396030)
[»] scaffold0057 (1 HSPs)
scaffold0057 (235-268)||(74975-75008)
[»] chr7 (1 HSPs)
chr7 (235-267)||(41585997-41586029)


Alignment Details
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 54157870 - 54157939
Alignment:
Q  15 taggctaatatgaagaacctgaaaagagaagtatggaagcttttgaaaattgaaagaaataaaaagggtt 84  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  54157870 taggctaatatgaagaacctgaaaagagaagtatgaaagcttttgaaaattgaaagaaataaaaagggtt 54157939  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 54157969 - 54158032
Alignment:
Q  97 agaataaaggaacgattattgcctggattgtcgtgggcttgaaaggagttaaaaacaccccacc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54157969 agaataaaggaacgattattgcctggattgtcgtgggcttgaaaggagttaaaaacaccccacc 54158032  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 54158077 - 54158141
Alignment:
Q  205 aatgaagggtcaggatttggagcaagtctttatatatagggttttgctagaagacgccttttatg 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  54158077 aatgaagggtcaggatttggagcaagtctttatatatagggttttgctagaagacaccttttatg 54158141  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 6137250 - 6137284
Alignment:
Q  235 tatatatagggttttgctagaagacgccttttatg 269  Q
    ||||||||||||||||||||||||| |||||||||    
T  6137250 tatatatagggttttgctagaagacaccttttatg 6137284  T

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Target: scaffold0086 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 8632 - 8598
Alignment:
Q  235 tatatatagggttttgctagaagacgccttttatg 269  Q
    |||||||| ||||||||||||||||||||||||||    
T  8632 tatatatatggttttgctagaagacgccttttatg 8598  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 392396 - 392430
Alignment:
Q  235 tatatatagggttttgctagaagacgccttttatg 269  Q
    ||||||||||||||||||||||||| |||||||||    
T  392396 tatatatagggttttgctagaagacaccttttatg 392430  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 12176372 - 12176338
Alignment:
Q  235 tatatatagggttttgctagaagacgccttttatg 269  Q
    ||||||||||||||||||||||||| |||||||||    
T  12176372 tatatatagggttttgctagaagacaccttttatg 12176338  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 12420800 - 12420766
Alignment:
Q  235 tatatatagggttttgctagaagacgccttttatg 269  Q
    ||||||||||||||||||||||||| |||||||||    
T  12420800 tatatatagggttttgctagaagacaccttttatg 12420766  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 23472505 - 23472539
Alignment:
Q  235 tatatatagggttttgctagaagacgccttttatg 269  Q
    ||||||||||||||||||||||||| |||||||||    
T  23472505 tatatatagggttttgctagaagacaccttttatg 23472539  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 39590042 - 39590008
Alignment:
Q  235 tatatatagggttttgctagaagacgccttttatg 269  Q
    ||||||||||||||||||||||||| |||||||||    
T  39590042 tatatatagggttttgctagaagacaccttttatg 39590008  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 21396030 - 21395996
Alignment:
Q  235 tatatatagggttttgctagaagacgccttttatg 269  Q
    ||||||||||||||||||||||||| |||||||||    
T  21396030 tatatatagggttttgctagaagacaccttttatg 21395996  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 74975 - 75008
Alignment:
Q  235 tatatatagggttttgctagaagacgccttttat 268  Q
    ||||||||||||||||||||||||||| ||||||    
T  74975 tatatatagggttttgctagaagacgctttttat 75008  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 41586029 - 41585997
Alignment:
Q  235 tatatatagggttttgctagaagacgcctttta 267  Q
    ||||||||||||||||||||||||| |||||||    
T  41586029 tatatatagggttttgctagaagacacctttta 41585997  T

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