View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3566_high_12 (Length: 266)
Name: NF3566_high_12
Description: NF3566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3566_high_12 |
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| [»] scaffold0368 (1 HSPs) |
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Alignment Details
Target: scaffold0368 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 13361 - 13125
Alignment:
| Q |
11 |
cagagaaatcgattttccggcgagatgtgagaagaataaccctgtgtgttgtgttaggtcctcgttatgaatgtcgagactcagagctatggatctgccg |
110 |
Q |
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| T |
13361 |
cagagaaattgattttccggtgagatgtgagaagaataaccctgcgtgttgtgttaggtcctcgttatgaatgtcgagactcagagccatggatctgccg |
13262 |
T |
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| Q |
111 |
ccgagttcagcgccgctggagttgaaaagggaagaagcataagagtaagattaattttttgtcgacgagggataaatcagaggagtaaatggtggcgggt |
210 |
Q |
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| T |
13261 |
ccgagttcagcgccgctggagttgaaaagggaagaagcataagagtaagattaactttctgtcggcgagggataaatcagaggagtaaatggtggcgggt |
13162 |
T |
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| Q |
211 |
ttccagtgaggagatgatccataagggaggggatgag |
247 |
Q |
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| T |
13161 |
ttccagtgaggagatgatccataagggaggggatgag |
13125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 42837446 - 42837682
Alignment:
| Q |
11 |
cagagaaatcgattttccggcgagatgtgagaagaataaccctgtgtgttgtgttaggtcctcgttatgaatgtcgagactcagagctatggatctgccg |
110 |
Q |
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| T |
42837446 |
cagagaaattgattttccggtgagatgtgagaagaataaccctgcgtgttgtgttaggtcctcgttatgaatgtcgagactcagagccatggatctgccg |
42837545 |
T |
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| Q |
111 |
ccgagttcagcgccgctggagttgaaaagggaagaagcataagagtaagattaattttttgtcgacgagggataaatcagaggagtaaatggtggcgggt |
210 |
Q |
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| T |
42837546 |
ccgagttcagcgccgctggagttgaaaagggaagaagcataagagtaagattaactttctgtcggcgagggataaatcagaggagtaaatggtggcgggt |
42837645 |
T |
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| Q |
211 |
ttccagtgaggagatgatccataagggaggggatgag |
247 |
Q |
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| T |
42837646 |
ttccagtgaggagatgatccataagggaggggatgag |
42837682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 12347030 - 12346970
Alignment:
| Q |
176 |
cgagggataaatcagaggagtaaatggtggcgggtttccagtgaggagatgatccataagg |
236 |
Q |
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| T |
12347030 |
cgaggggtaaatccgaggagtaaatggtgtcagactttcagtgaggagatgatccagaagg |
12346970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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