View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3566_high_16 (Length: 243)
Name: NF3566_high_16
Description: NF3566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3566_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 8522398 - 8522183
Alignment:
| Q |
9 |
gagtgagatgaaggacaagaatgacgaggaaccatagttcaatcacgaatcagaattaga------tggtgcaaatgtcgtagttttattgttgtaatta |
102 |
Q |
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| T |
8522398 |
gagtgaaaagaaggacaagaatgacgaggaaccaaagttcaatcacgaatcagaatcagaatcagatggtgcaaatgtcgtagttttgttgttgtaatta |
8522299 |
T |
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| Q |
103 |
ttttctcttttgtctgttgggtttttactttctgttaaaacaagcttgactcttttgatcttgctagtttgattttcagttgtaagtttgtggtctcagg |
202 |
Q |
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| T |
8522298 |
ttttctcttttgtctgttgggtttttactttctgttaaaacaagcttgactcttttgatcttgctagtttgattttcagttgtaagtttatggtctcagg |
8522199 |
T |
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| Q |
203 |
tctgtttataagtgca |
218 |
Q |
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| T |
8522198 |
tctgtttataagtgca |
8522183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 42122739 - 42122646
Alignment:
| Q |
45 |
gttcaatcacgaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttctgtt |
138 |
Q |
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| T |
42122739 |
gttcaaccatgaatcagaatcagatggtgcaaatgtcatagttttattgttgtagttactttatctgttgtgtgttggttttttactttctgtt |
42122646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 42116966 - 42116886
Alignment:
| Q |
55 |
gaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttct |
135 |
Q |
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| T |
42116966 |
gaatcagaatcagatggtgcaaatgtcatagttttattgttgttgttattttctctattgtgtgttagttttttactttct |
42116886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 42128134 - 42128044
Alignment:
| Q |
45 |
gttcaatcacgaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttct |
135 |
Q |
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| T |
42128134 |
gttcaaccatgaatcagaatcagatggtgcaaatgtcatagttttattgttctagttattttctctattgtgtattagttttttactttct |
42128044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 41572860 - 41572910
Alignment:
| Q |
61 |
gaattagatggtgcaaatgtcgtagttttattgttgtaattattttctctt |
111 |
Q |
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| T |
41572860 |
gaattagatggtgcagatgtgatagttttattgttctgattattttctctt |
41572910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 11117396 - 11117289
Alignment:
| Q |
45 |
gttcaatcacgaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttctg-ttaaaac |
143 |
Q |
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| T |
11117396 |
gttcaaacatgaatcagaatcagatggtgcaaatgtcatagttttattgtcgtagttactttctccgttgggtgttggttttttactttctgtttaaaat |
11117297 |
T |
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| Q |
144 |
aagcttga |
151 |
Q |
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| T |
11117296 |
aagcttga |
11117289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 25523884 - 25523943
Alignment:
| Q |
55 |
gaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgt |
115 |
Q |
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| T |
25523884 |
gaatcagaatcagatgatgcaaatgtcatagttt-attgttttagttattttctcttttgt |
25523943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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