View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3566_high_20 (Length: 228)

Name: NF3566_high_20
Description: NF3566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3566_high_20
NF3566_high_20
[»] chr4 (1 HSPs)
chr4 (12-218)||(13893606-13893812)
[»] chr1 (2 HSPs)
chr1 (1-218)||(44306134-44306350)
chr1 (5-167)||(22893811-22893974)
[»] chr2 (2 HSPs)
chr2 (1-218)||(6049917-6050126)
chr2 (5-209)||(26661517-26661720)
[»] scaffold0586 (1 HSPs)
scaffold0586 (5-167)||(9601-9760)
[»] chr8 (2 HSPs)
chr8 (5-167)||(32717779-32717938)
chr8 (5-167)||(10637656-10637815)
[»] chr6 (2 HSPs)
chr6 (5-167)||(19701168-19701332)
chr6 (5-209)||(21481435-21481638)
[»] chr7 (3 HSPs)
chr7 (5-190)||(33430156-33430346)
chr7 (5-121)||(13331531-13331646)
chr7 (5-121)||(13342446-13342561)
[»] chr5 (1 HSPs)
chr5 (5-121)||(5672002-5672117)
[»] chr3 (1 HSPs)
chr3 (15-121)||(15761973-15762079)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 13893812 - 13893606
Alignment:
Q  12 tggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13893812 tggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagat 13893713  T
Q  112 ttggtgattgatatcattatctcattattttttggtctactgttgttgcttattgccttctctcaactcatttttgttcctgttttgagaaatttaaccc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13893712 ttggtgattgatatcattatctcattattttttggtctactgttgttgcttattgccttctatcaactcatttttgttcctgttttgagaaatttaaccc 13893613  T
Q  212 acctttg 218  Q
    |||||||    
T  13893612 acctttg 13893606  T

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Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 44306134 - 44306350
Alignment:
Q  1 catcatctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44306134 catcatctttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatt-cttttcaattcttccattac 44306232  T
Q  101 tcaacatagatttggtgattgatatcattatctcattattttttggtctactgttgttgcttattgccttctctcaactcatttttgttcctgttttgag 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44306233 tcaacatagatttggtcattgatatcattatctcattattttttggtgtactgttgttgcttattgccttctctcaactcatttttgttccttttttgag 44306332  T
Q  201 aaatttaacccacctttg 218  Q
    ||||||||||||||||||    
T  44306333 aaatttaacccacctttg 44306350  T

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Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 22893811 - 22893974
Alignment:
Q  5 atctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaa 104  Q
    |||||||| |||||||||||||||||| | |||  ||| |||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||    
T  22893811 atctttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtaacatctaatttcattttaattcttccattactcaa 22893910  T
Q  105 catagatttggtgattgatatca-ttatctcattattttttggtctactgttgttgcttattgc 167  Q
    |||||||||||||||| |||||| || |||  || |||||| |||| ||| |||||||||||||    
T  22893911 catagatttggtgatttatatcatttctctgtttttttttttgtcttctgatgttgcttattgc 22893974  T

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Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 6049917 - 6050126
Alignment:
Q  1 catcatctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6049917 catcatctttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattac 6050016  T
Q  101 tcaacatagatttggtgattgatatcattatctcattattttttggtctactgttgttgcttattgccttctctcaactcatttttgttcctgttttgag 200  Q
    ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6050017 tcaacatagatttggtgattgata--------tcattattttttggtctactgttgttgcttattgccttctctcaactcatttgtgttcctgttttgag 6050108  T
Q  201 aaatttaacccacctttg 218  Q
    ||||||||||||||||||    
T  6050109 aaatttaacccacctttg 6050126  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 26661517 - 26661720
Alignment:
Q  5 atctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaa 104  Q
    ||||||||| ||| |||||||||||||  | || |||| | |||||||||||||| ||||||||| |||| |||||| |   ||||||||||||||||||    
T  26661517 atctttgtg-tgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaa 26661615  T
Q  105 catagatttggtgattgatatcattatctcattattttttggtctactg-ttgttgcttattgccttctctcaactcatttttgttcctgttt--tgaga 201  Q
    ||||||||||||||||||||||| | ||||  | |||||| |||| ||| |||||||||||||| || ||||||| ||||||||||| | |||  |||||    
T  26661616 catagatttggtgattgatatcaat-tctc--tgtttttttgtctgctgtttgttgcttattgctttgtctcaacccatttttgttcattttttatgaga 26661712  T
Q  202 aatttaac 209  Q
    ||||||||    
T  26661713 aatttaac 26661720  T

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Target: scaffold0586 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 9601 - 9760
Alignment:
Q  5 atctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaa 104  Q
    |||||||| |||||||||||||||||||| |||  ||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  9601 atctttgtagtgttcatcaactgcttgttgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaa 9700  T
Q  105 catagatttggtgattgatatcattatctcattattttttggtctactgttgttgcttattgc 167  Q
    |||||||||||||||| |||||||| ||||  | |||||| |||| ||| |||||||||||||    
T  9701 catagatttggtgatttatatcatt-tctc--tgtttttttgtcttctgatgttgcttattgc 9760  T

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Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 167
Target Start/End: Complemental strand, 32717938 - 32717779
Alignment:
Q  5 atctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaa 104  Q
    |||||||| |||||||||||||||||| | |||  ||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  32717938 atctttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaa 32717839  T
Q  105 catagatttggtgattgatatcattatctcattattttttggtctactgttgttgcttattgc 167  Q
    |||||||||||||||| |||||||| ||||  | |||||| |||| ||| |||||||||||||    
T  32717838 catagatttggtgatttatatcatt-tctc--tgtttttttgtcttctgatgttgcttattgc 32717779  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 10637656 - 10637815
Alignment:
Q  5 atctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaa 104  Q
    |||||||| |||||||||||||||||| | |||  ||| |||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||    
T  10637656 atctttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtatcatctaatttcattttaattcttccattactcaa 10637755  T
Q  105 catagatttggtgattgatatcattatctcattattttttggtctactgttgttgcttattgc 167  Q
    |||||||||||||||| |||||||| ||||  | |||||| |||| ||| |||||||||||||    
T  10637756 catagatttggtgatttatatcatt-tctc--tgtttttttgtcttctgatgttgcttattgc 10637815  T

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Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 19701168 - 19701332
Alignment:
Q  5 atctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaa 104  Q
    |||||||| |||||||||||||||||| |||||  ||| ||||||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  19701168 atctttgtagtgttcatcaactgcttgctatttgagttttggatttcacttttctcttcaaggtaccatctaatttcattttaattcttccattactcaa 19701267  T
Q  105 catagatttggtgattgatatcatta-tctcattattttttg-gtctactgttgttgcttattgc 167  Q
    |||||||||| ||||| ||||||||  ||| ||| ||||||  |||| ||| |||||||||||||    
T  19701268 catagatttgttgatttatatcatttctctgatttttttttttgtcttctgatgttgcttattgc 19701332  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 21481435 - 21481638
Alignment:
Q  5 atctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaa 104  Q
    ||||||||| ||| |||||||| ||||  | || |||| | |||||||||||||| ||||||||| |||| |||||| |   ||||||||||||||||||    
T  21481435 atctttgtg-tgtgcatcaactacttgccaattgggtttttgatttcactcttctattcaaggtaacatctaatttcatcataattcttccattactcaa 21481533  T
Q  105 catagatttggtgattgatatcattatctcattattttttggtctactg-ttgttgcttattgccttctctcaactcatttttgttcctgttt--tgaga 201  Q
    ||||||||||||||||||||||| | ||||  | |||||| |||| ||| |||||||||||||| || ||||||| ||||||||||| | |||  |||||    
T  21481534 catagatttggtgattgatatcaat-tctc--tgtttttttgtctgctgtttgttgcttattgctttgtctcaacccatttttgttcattttttatgaga 21481630  T
Q  202 aatttaac 209  Q
    ||||||||    
T  21481631 aatttaac 21481638  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 33430346 - 33430156
Alignment:
Q  5 atctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattc-ttccattactca 103  Q
    ||||||| |||||||||||| || ||| ||||| | || || |||||||| ||||||||||||||||||| ||||| ||||  | || ||||||||||||    
T  33430346 atctttgaggtgttcatcaagtgtttgctatttggattttgaatttcactattctcttcaaggtaccatctaattttttttttaatcgttccattactca 33430247  T
Q  104 acatagatttggtgattgatatcattatctcattattttttg----gtctactgttgttgcttattgccttctctcaactcatttttgttc 190  Q
    || |||||||| ||||||| |||||| ||||||| ||||||     ||||| ||||||||||||||||||||||||||| |||||||||||    
T  33430246 acgtagatttgatgattgacatcattctctcattgttttttttattgtctattgttgttgcttattgccttctctcaacccatttttgttc 33430156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 13331646 - 13331531
Alignment:
Q  5 atctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaa 104  Q
    ||||||||| ||||||||||||||||| |  ||  ||| | ||||||||||||||||||||||||||||| |||||  | ||||||||||||||||||||    
T  13331646 atctttgtg-tgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaa 13331548  T
Q  105 catagatttggtgattg 121  Q
    |||||||||||||||||    
T  13331547 catagatttggtgattg 13331531  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 13342561 - 13342446
Alignment:
Q  5 atctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaa 104  Q
    ||||||||| ||||||||||||||||| |  ||  ||| | ||||||||||||||||||||||||||||| |||||  | ||||||||||||||||||||    
T  13342561 atctttgtg-tgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaa 13342463  T
Q  105 catagatttggtgattg 121  Q
    |||||||||||||||||    
T  13342462 catagatttggtgattg 13342446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 5672117 - 5672002
Alignment:
Q  5 atctttgtggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaa 104  Q
    ||||||||| ||||||||||||||||| |  ||  ||| | ||||||||||||||||||||||||||||| |||||  | ||||||||||||||||||||    
T  5672117 atctttgtg-tgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaa 5672019  T
Q  105 catagatttggtgattg 121  Q
    |||||||||||||||||    
T  5672018 catagatttggtgattg 5672002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 15762079 - 15761973
Alignment:
Q  15 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 114  Q
    ||||||||||||  ||| || ||||| | | ||||||||| |||| ||||| |||||||| |||||| | |||||||||| |||||||||||||||||||    
T  15762079 tgttcatcaactatttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttctattactcaacatagatttg 15761980  T
Q  115 gtgattg 121  Q
    |||||||    
T  15761979 gtgattg 15761973  T

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