View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3566_high_22 (Length: 215)
Name: NF3566_high_22
Description: NF3566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3566_high_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 38052390 - 38052192
Alignment:
| Q |
1 |
cctacggagcccatcaaacaatatcataatcactaggttgtatgctttttaatataattaaatcccaatttaaagagcaccaaaacatcaacttacagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38052390 |
cctacggagcccatcaaacaatatcataatcactaggttgtatgctttttaatataattaaatcccaatttaaagagcaccaaaacatcaacttacagag |
38052291 |
T |
|
| Q |
101 |
atttaaacaatttgttatggtttgtattttagtttcagactctatcaaaaagtttgatggaactatgtttaaaatccggcggttttggagatacttttt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38052290 |
atttaaacaatttgttatggtttgtattttagtttcagactctatcaaaaagtttgatggaactatgtttaaaatccggcagttttggagatacttttt |
38052192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University