View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3566_high_3 (Length: 433)
Name: NF3566_high_3
Description: NF3566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3566_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 42645076 - 42645328
Alignment:
| Q |
16 |
cactaattagtgtaaaggacgagagagaga----catattcnnnnnnnntaaggacgtatattactcatttacccttccacaaaagggagaagtgcttaa |
111 |
Q |
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| T |
42645076 |
cactaattagtgtaaaggacgagagagagagagacatattaaaaaaaaataaggacgtatattactcatttacccttccacaaaagggagaagagcttaa |
42645175 |
T |
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| Q |
112 |
aaggataattgactttagaccatagattgcaataattgaagagcatttttcatcgatcaggtttgattctgccaggcctaaaaagtattattacgacatt |
211 |
Q |
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| T |
42645176 |
aaggataattgactttagaccatagattgcaataattgaagagcatttttcatcgatcaggtttgattctgccaagcctaaaaagtattattacgacatt |
42645275 |
T |
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| Q |
212 |
gcattagatttgagagcttat----agttggcttaagcttatttgtttgagag |
260 |
Q |
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| T |
42645276 |
gcattagatttgagagcttatattgagttggcttaagcttatttgtttgagag |
42645328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 252 - 425
Target Start/End: Original strand, 42646087 - 42646261
Alignment:
| Q |
252 |
gtttgagagtaatggtaccaatagtactagtattattttcgtaaagaagccacacacattaaaatatgtgcctaaagtatatactcagtattctgtacaa |
351 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42646087 |
gtttgagagtaatggtaccaatagtactagtactattttcgtaaagaagccacacacattaaaatatgtgcctaaagtatatactcagtattatgtacaa |
42646186 |
T |
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| Q |
352 |
tacccaaataaaaataacagggtcacaatgaaaaacagggtcattcatt-cctattcccgttgaatacctatgct |
425 |
Q |
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| T |
42646187 |
tacccaaataaaaaaaacagggtcacaatgaaaaacagggtcattcattccctattcccgttgaatatctatgct |
42646261 |
T |
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