View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3566_high_8 (Length: 298)
Name: NF3566_high_8
Description: NF3566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3566_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 98 - 289
Target Start/End: Original strand, 28599052 - 28599243
Alignment:
| Q |
98 |
aaccttctaattcctttgctcaaattccgtctcatgatgttttcatgcaaaaaactcaacatgttcaaattggtggaagtggaagtgcaatttcaatgca |
197 |
Q |
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| T |
28599052 |
aaccttctaattcctttgctcaaattccgtctcatgatgttttcatgcaaaaaactcaacatgctcaaattggtggaagtggaagtgcaatttcaatgca |
28599151 |
T |
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| Q |
198 |
tgcacattcaatggatcaattgcttctaatgcaacacccttttgatgtgagtgttctacttgagaataagatgataagtggtgatggtgatg |
289 |
Q |
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| T |
28599152 |
tgcacattcaatggatcaattgcttctaattcaacacccttttgatgtgagtgttctacttgagaataagatgataagtggtggtggtgatg |
28599243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 28598975 - 28599025
Alignment:
| Q |
18 |
agaaaaagcatttaatgctgccaaagaaagagtaataatgatgttgtcctc |
68 |
Q |
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| T |
28598975 |
agaaaaagcatttaatgctgccaaagaaagagtaatgatgatgttgtcctc |
28599025 |
T |
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