View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3566_high_9 (Length: 297)

Name: NF3566_high_9
Description: NF3566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3566_high_9
NF3566_high_9
[»] chr7 (38 HSPs)
chr7 (2-293)||(43118703-43118994)
chr7 (73-198)||(16979934-16980059)
chr7 (43-223)||(19676962-19677142)
chr7 (70-220)||(23142646-23142796)
chr7 (97-221)||(34993148-34993272)
chr7 (84-177)||(8896605-8896698)
chr7 (71-200)||(37928290-37928419)
chr7 (75-165)||(18220984-18221074)
chr7 (91-204)||(25530559-25530672)
chr7 (80-198)||(30027956-30028076)
chr7 (84-220)||(12810154-12810289)
chr7 (70-187)||(16685734-16685853)
chr7 (70-187)||(17659970-17660089)
chr7 (73-192)||(43626345-43626464)
chr7 (43-177)||(8746149-8746282)
chr7 (48-221)||(31850719-31850893)
chr7 (72-199)||(1521199-1521323)
chr7 (73-187)||(1309720-1309834)
chr7 (68-187)||(41064292-41064415)
chr7 (92-187)||(31487725-31487820)
chr7 (70-125)||(34993091-34993146)
chr7 (47-177)||(26241575-26241705)
chr7 (60-187)||(42888306-42888433)
chr7 (47-141)||(18756912-18757006)
chr7 (81-135)||(31249568-31249622)
chr7 (76-177)||(45907033-45907134)
chr7 (72-156)||(39786447-39786531)
chr7 (78-177)||(21515032-21515131)
chr7 (110-165)||(23080658-23080713)
chr7 (118-173)||(23317839-23317894)
chr7 (45-179)||(24937843-24937976)
chr7 (78-148)||(18037851-18037921)
chr7 (70-220)||(41760332-41760482)
chr7 (103-220)||(7833770-7833887)
chr7 (70-175)||(47445349-47445454)
chr7 (84-172)||(8117451-8117539)
chr7 (78-178)||(11740362-11740462)
chr7 (72-116)||(30095394-30095438)
[»] chr8 (40 HSPs)
chr8 (70-199)||(44648931-44649060)
chr8 (42-182)||(3137408-3137548)
chr8 (71-187)||(10029165-10029281)
chr8 (44-221)||(20542356-20542533)
chr8 (70-212)||(600350-600492)
chr8 (73-187)||(18200677-18200791)
chr8 (73-187)||(35901412-35901526)
chr8 (72-156)||(3347506-3347590)
chr8 (44-181)||(42361481-42361618)
chr8 (75-220)||(17720176-17720322)
chr8 (44-223)||(11150890-11151068)
chr8 (49-199)||(27506920-27507068)
chr8 (75-177)||(547075-547181)
chr8 (67-160)||(18045313-18045406)
chr8 (73-198)||(41726888-41727013)
chr8 (70-198)||(40489842-40489969)
chr8 (84-220)||(43917557-43917693)
chr8 (70-177)||(6270143-6270249)
chr8 (45-181)||(23425231-23425371)
chr8 (91-222)||(34678221-34678351)
chr8 (77-187)||(32881116-32881226)
chr8 (84-195)||(1342317-1342427)
chr8 (136-211)||(23725684-23725759)
chr8 (89-168)||(25250321-25250401)
chr8 (78-222)||(33621340-33621478)
chr8 (72-146)||(12981605-12981679)
chr8 (91-157)||(37561513-37561579)
chr8 (70-156)||(40607332-40607418)
chr8 (83-165)||(44947372-44947453)
chr8 (70-179)||(18131203-18131311)
chr8 (45-170)||(39534107-39534231)
chr8 (91-147)||(12201835-12201891)
chr8 (91-147)||(12446263-12446319)
chr8 (86-198)||(18647470-18647581)
chr8 (95-179)||(44655252-44655336)
chr8 (70-157)||(4989728-4989815)
chr8 (86-220)||(31330970-31331105)
chr8 (73-114)||(40604241-40604282)
chr8 (129-177)||(10652793-10652841)
chr8 (91-210)||(23797507-23797626)
[»] chr3 (32 HSPs)
chr3 (70-213)||(49261757-49261900)
chr3 (73-194)||(44698214-44698335)
chr3 (72-179)||(4020109-4020216)
chr3 (43-187)||(6785760-6785905)
chr3 (91-220)||(48338783-48338912)
chr3 (77-177)||(29032425-29032525)
chr3 (42-221)||(42437681-42437858)
chr3 (90-193)||(50958857-50958960)
chr3 (72-198)||(635700-635826)
chr3 (70-221)||(38359016-38359167)
chr3 (68-198)||(11676727-11676857)
chr3 (83-199)||(54801336-54801452)
chr3 (70-187)||(28709559-28709676)
chr3 (108-220)||(4128724-4128836)
chr3 (43-222)||(44291197-44291374)
chr3 (84-187)||(55446736-55446838)
chr3 (77-187)||(12109653-12109763)
chr3 (78-219)||(34145906-34146046)
chr3 (73-177)||(8326151-8326254)
chr3 (72-146)||(1711919-1711993)
chr3 (72-187)||(26613060-26613176)
chr3 (103-187)||(31494031-31494115)
chr3 (91-187)||(25319466-25319562)
chr3 (91-178)||(2379619-2379705)
chr3 (78-157)||(25958060-25958139)
chr3 (132-187)||(53818829-53818884)
chr3 (45-98)||(27144092-27144145)
chr3 (84-143)||(3215088-3215147)
chr3 (70-172)||(15671110-15671212)
chr3 (119-173)||(37043028-37043082)
chr3 (76-172)||(17109533-17109630)
chr3 (107-187)||(33051578-33051658)
[»] chr2 (33 HSPs)
chr2 (70-220)||(40574136-40574286)
chr2 (47-200)||(13717168-13717320)
chr2 (73-181)||(40346717-40346825)
chr2 (72-181)||(23453353-23453463)
chr2 (75-187)||(4978750-4978862)
chr2 (71-195)||(6462586-6462709)
chr2 (75-187)||(13738393-13738505)
chr2 (75-187)||(18717853-18717965)
chr2 (72-220)||(41436295-41436443)
chr2 (45-211)||(4557550-4557717)
chr2 (83-187)||(4996666-4996770)
chr2 (73-195)||(1004771-1004892)
chr2 (72-157)||(4186405-4186490)
chr2 (86-187)||(38024190-38024290)
chr2 (71-221)||(8580481-8580631)
chr2 (45-177)||(1870462-1870593)
chr2 (107-211)||(6315866-6315970)
chr2 (43-225)||(3689585-3689765)
chr2 (72-187)||(18857437-18857552)
chr2 (76-192)||(32909404-32909523)
chr2 (45-172)||(19889763-19889891)
chr2 (111-179)||(27896474-27896542)
chr2 (42-149)||(13835877-13835984)
chr2 (73-171)||(3201134-3201232)
chr2 (93-187)||(28331270-28331364)
chr2 (143-200)||(42251597-42251654)
chr2 (70-177)||(7932884-7932991)
chr2 (72-187)||(42551958-42552072)
chr2 (128-179)||(43131810-43131861)
chr2 (45-126)||(36087407-36087488)
chr2 (67-187)||(43080296-43080415)
chr2 (73-187)||(17641177-17641291)
chr2 (73-125)||(7669194-7669246)
[»] chr1 (30 HSPs)
chr1 (44-213)||(46295838-46296007)
chr1 (72-223)||(13969094-13969245)
chr1 (70-197)||(26829485-26829612)
chr1 (45-198)||(8001715-8001868)
chr1 (72-200)||(33148126-33148254)
chr1 (79-177)||(10226464-10226562)
chr1 (44-177)||(27688492-27688625)
chr1 (73-200)||(17169266-17169393)
chr1 (47-177)||(11449073-11449203)
chr1 (42-157)||(48282856-48282971)
chr1 (78-220)||(32187024-32187165)
chr1 (123-213)||(34347556-34347646)
chr1 (74-196)||(30941466-30941588)
chr1 (70-178)||(52429639-52429748)
chr1 (72-177)||(40699263-40699368)
chr1 (72-177)||(49731157-49731262)
chr1 (110-181)||(38597489-38597560)
chr1 (70-177)||(39238844-39238951)
chr1 (94-231)||(8279695-8279832)
chr1 (72-122)||(39993446-39993496)
chr1 (73-198)||(50015771-50015896)
chr1 (80-187)||(30109229-30109337)
chr1 (155-196)||(17644831-17644872)
chr1 (50-146)||(11065840-11065936)
chr1 (78-172)||(40391218-40391313)
chr1 (75-157)||(48579929-48580011)
chr1 (103-144)||(15398275-15398316)
chr1 (43-99)||(27160276-27160332)
chr1 (105-149)||(38169094-38169138)
chr1 (91-179)||(50127362-50127450)
[»] chr4 (35 HSPs)
chr4 (44-193)||(12094955-12095104)
chr4 (70-222)||(27284040-27284192)
chr4 (75-197)||(2824814-2824936)
chr4 (67-221)||(31991448-31991602)
chr4 (67-187)||(12076418-12076538)
chr4 (70-222)||(48419041-48419193)
chr4 (70-192)||(13967842-13967965)
chr4 (91-198)||(28740277-28740384)
chr4 (68-225)||(20775037-20775194)
chr4 (70-171)||(31089778-31089878)
chr4 (109-177)||(19480550-19480618)
chr4 (105-225)||(39810731-39810850)
chr4 (73-220)||(28176746-28176892)
chr4 (88-176)||(44190235-44190321)
chr4 (46-198)||(52837233-52837388)
chr4 (84-176)||(2565418-2565510)
chr4 (75-178)||(22019615-22019718)
chr4 (55-177)||(22611875-22611998)
chr4 (54-168)||(7437806-7437920)
chr4 (42-187)||(27133552-27133697)
chr4 (75-179)||(19147146-19147250)
chr4 (67-178)||(51100016-51100128)
chr4 (72-187)||(16341097-16341212)
chr4 (45-196)||(41142262-41142413)
chr4 (73-156)||(45921335-45921418)
chr4 (154-223)||(36506747-36506816)
chr4 (91-179)||(30694297-30694382)
chr4 (78-160)||(31861429-31861511)
chr4 (107-171)||(44639887-44639951)
chr4 (88-171)||(37431793-37431876)
chr4 (70-177)||(55090794-55090900)
chr4 (84-194)||(55126785-55126896)
chr4 (44-116)||(2908178-2908250)
chr4 (128-160)||(3708722-3708754)
chr4 (121-177)||(36752696-36752752)
[»] chr5 (22 HSPs)
chr5 (42-220)||(22293954-22294131)
chr5 (72-198)||(11815903-11816029)
chr5 (70-200)||(27544579-27544709)
chr5 (75-187)||(30840596-30840707)
chr5 (75-197)||(30293821-30293943)
chr5 (73-169)||(36482072-36482168)
chr5 (43-179)||(14863347-14863483)
chr5 (72-169)||(14044677-14044772)
chr5 (77-150)||(18242479-18242552)
chr5 (47-219)||(8151765-8151940)
chr5 (75-190)||(41645034-41645147)
chr5 (71-177)||(1447548-1447654)
chr5 (70-172)||(2611141-2611244)
chr5 (70-148)||(6102870-6102948)
chr5 (111-192)||(6646286-6646367)
chr5 (132-220)||(7609595-7609682)
chr5 (37-220)||(8435027-8435210)
chr5 (111-181)||(1056818-1056888)
chr5 (42-148)||(12036273-12036379)
chr5 (71-121)||(34346951-34347001)
chr5 (132-220)||(7319228-7319316)
chr5 (91-199)||(27365985-27366093)
[»] scaffold0002 (1 HSPs)
scaffold0002 (71-213)||(120646-120788)
[»] chr6 (21 HSPs)
chr6 (77-187)||(5611129-5611239)
chr6 (72-198)||(32134038-32134164)
chr6 (70-220)||(227303-227455)
chr6 (72-187)||(19659610-19659724)
chr6 (44-220)||(31223165-31223330)
chr6 (45-177)||(33121279-33121411)
chr6 (68-177)||(2911458-2911567)
chr6 (42-187)||(2470354-2470499)
chr6 (78-179)||(10008204-10008304)
chr6 (70-187)||(17834969-17835086)
chr6 (105-178)||(18493255-18493328)
chr6 (45-177)||(19320239-19320372)
chr6 (118-192)||(8636785-8636859)
chr6 (78-187)||(17345843-17345952)
chr6 (72-220)||(30929465-30929615)
chr6 (128-179)||(27082322-27082373)
chr6 (75-177)||(12677833-12677935)
chr6 (46-150)||(17453942-17454046)
chr6 (91-145)||(2613366-2613420)
chr6 (73-158)||(2398040-2398125)
chr6 (45-157)||(17506299-17506411)
[»] scaffold0204 (1 HSPs)
scaffold0204 (73-225)||(15362-15514)
[»] scaffold0039 (1 HSPs)
scaffold0039 (78-178)||(29988-30088)
[»] scaffold0329 (1 HSPs)
scaffold0329 (73-151)||(7398-7475)
[»] scaffold0079 (1 HSPs)
scaffold0079 (72-187)||(51649-51764)
[»] scaffold0036 (1 HSPs)
scaffold0036 (54-157)||(36565-36668)
[»] scaffold0283 (1 HSPs)
scaffold0283 (83-165)||(3350-3432)
[»] scaffold0006 (1 HSPs)
scaffold0006 (45-169)||(38822-38946)
[»] scaffold0299 (1 HSPs)
scaffold0299 (75-197)||(18014-18137)
[»] scaffold1372 (1 HSPs)
scaffold1372 (42-116)||(1237-1310)
[»] scaffold0957 (1 HSPs)
scaffold0957 (84-182)||(1921-2018)
[»] scaffold0117 (1 HSPs)
scaffold0117 (85-179)||(16838-16932)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 2 - 293
Target Start/End: Complemental strand, 43118994 - 43118703
Alignment:
Q  2 ttaaaatcaatgaagcttcgattgtgctttatagataaagaaagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaatt 101  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  43118994 ttaaaatcaatgaagattcgattgtgctttatagataaagaaagggtcttgttaaccggtgcctccagggcaatggttaagaaatctacaaatataaatt 43118895  T
Q  102 ctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaa 201  Q
     |||||||||||||||||||||||||||||||||| || ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43118894 ttgtcttgaaaatatgagatgttacatttgatcaaatagtaattacgcaattttttcattaaaacttacttgttttggatgattaagcattgcccttgaa 43118795  T
Q  202 gcactggttaaccttctccataaagaaatgattatcgccaaggagtatgaagaaaattaacaaagtggctcttctctctccctttgctactc 293  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  43118794 gcacttgttaaccttctccataaagaaatgattatcgccaaggagtatgaagaaaatttacaaagtggctcttctctctccctttggtactc 43118703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 16980059 - 16979934
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    |||||||||  ||| ||||| |||||||| |||||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||| |||| ||||||    
T  16980059 aatggttaaagaatttacaattagaaattttgtcttgaaaatataagatgttacttttgatcgagtaataatcacacaactttttcataaaaatttactt 16979960  T
Q  173 gttttggatgattaagcattgccctt 198  Q
    |||||||||| |||| || |||||||    
T  16979959 gttttggatgcttaaccaatgccctt 16979934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 43 - 223
Target Start/End: Complemental strand, 19677142 - 19676962
Alignment:
Q  43 aagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaata 142  Q
    |||||||||| |||||  ||||  || |||| |||||||| |||| ||||||||||||| |||||||||||||| ||||||||| |||||| |||||||     
T  19677142 aagggtcttgctaaccaatgccctcagggcattggttaaggaatcgacaaatagaaattttgtcttgaaaatataagatgttacttttgattaagtaatg 19677043  T
Q  143 attacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcactggttaaccttctccata 223  Q
    |||||||| ||||| ||  ||||||| ||||||| ||||| |||| || ||||||||  ||||| |||| | |||||||||    
T  19677042 attacacaccttttacaccaaaacttgcttgtttaggatgcttaaccaatgcccttggggcactagttagcattctccata 19676962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 23142646 - 23142796
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaac-tttttcattaaaactt 168  Q
    ||||||| |||| ||||||||||||||||||| ||| ||| |||||| ||||||||  |||||||||||||| |||||||||| |||||||| |||||||    
T  23142646 ggcaatgattaataaatctacaaatagaaattttgt-ttggaaatataagatgttatttttgatcaagtaattattacacaacttttttcataaaaactt 23142744  T
Q  169 acttgttttggatgattaagcattgcccttgaagcactggttaaccttctcc 220  Q
    |||| ||||||||| |||| || ||| |||||  |||| |||||| ||||||    
T  23142745 acttattttggatgtttaaccaatgctcttgagacactcgttaacattctcc 23142796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 221
Target Start/End: Original strand, 34993148 - 34993272
Alignment:
Q  97 aaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagcattgccc 196  Q
    ||||| |||||| ||||||| ||||||||| |||||| || ||||||||||||||||||||||| |||||||||||| ||| |||| |||| |||||| |    
T  34993148 aaattttgtcttaaaaatataagatgttacttttgataaaataataattacacaactttttcatgaaaacttacttgatttagatgcttaatcattgctc 34993247  T
Q  197 ttgaagcactggttaaccttctcca 221  Q
    ||   |||||||||||| |||||||    
T  34993248 ttagggcactggttaacattctcca 34993272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 177
Target Start/End: Original strand, 8896605 - 8896698
Alignment:
Q  84 aatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgtttt 177  Q
    |||||||||||| ||||| |||||| ||||||| ||||||||| |||||||| ||||| ||||||||| |||||||| ||||||||||||||||    
T  8896605 aatctacaaatataaattttgtcttaaaaatataagatgttacttttgatcaggtaatgattacacaattttttcatgaaaacttacttgtttt 8896698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 37928419 - 37928290
Alignment:
Q  71 gcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttac 170  Q
    |||||||||||  |||||| ||||| ||||| | |||||||||||| | ||||||  |||||| ||||||| ||||||||||||||| || |||||||||    
T  37928419 gcaatggttaaagaatctataaatataaattttatcttgaaaatataaaatgttatttttgataaagtaattattacacaacttttttataaaaacttac 37928320  T
Q  171 ttgttttggatgattaagcattgcccttga 200  Q
    || ||||||||| |||| || || ||||||    
T  37928319 ttattttggatgtttaaccaatgtccttga 37928290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 18220984 - 18221074
Alignment:
Q  75 tggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaa 165  Q
    |||||||| ||||||| ||||||| || || |||| |||||| |||||||||||||||| |||||||||||| ||||||||||||| ||||    
T  18220984 tggttaaggaatctactaatagaagttttgacttggaaatataagatgttacatttgattaagtaataattatacaactttttcataaaaa 18221074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 25530559 - 25530672
Alignment:
Q  91 aaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagca 190  Q
    ||||||||||| | ||||  |||||| | |||||||||||||| ||||||| ||||||||| |||||||| |||||||| |||||||||||| | || ||    
T  25530559 aaatagaaattttatcttagaaatataaaatgttacatttgataaagtaatgattacacaattttttcataaaaacttatttgttttggatgctgaacca 25530658  T
Q  191 ttgcccttgaagca 204  Q
    || | |||||||||    
T  25530659 ttactcttgaagca 25530672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 30028076 - 30027956
Alignment:
Q  80 aagaaatctacaaatagaaattctgtcttgaaaatatg--agatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgtttt 177  Q
    ||||||||||||  |||||||| |||| |||||||||   ||||||||| |||||| ||||||| || ||||||||||||||| ||| |||||||||| |    
T  30028076 aagaaatctacagttagaaattttgtcatgaaaatatataagatgttacttttgataaagtaatgatcacacaactttttcatgaaatcttacttgttat 30027977  T
Q  178 ggatgattaagcattgccctt 198  Q
    ||||| |||| |||| |||||    
T  30027976 ggatgtttaaccattaccctt 30027956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 12810154 - 12810289
Alignment:
Q  84 aatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatga 183  Q
    |||||| ||||  ||||| |||||| ||||||| |||| |||| |||||  |||||||||||||||||||||||||| ||| | | |||||||| ||||     
T  12810154 aatctataaatgaaaattttgtcttaaaaatataagatattacttttgacaaagtaataattacacaactttttcatgaaagcatgcttgttttagatgt 12810253  T
Q  184 ttaagcattgcccttgaagcactggttaaccttctcc 220  Q
    |||| ||||||||||| | ||| ||||||| ||||||    
T  12810254 ttaaccattgcccttgga-caccggttaacattctcc 12810289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 16685853 - 16685734
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttaca-tttgatcaagtaataattacacaacttttt-cattaaaact 167  Q
    |||| |||||||| ||||||| ||||||| || ||||||  |||||| |||||||||  |||||||||||||| |||||||||||||||  || ||||||    
T  16685853 ggcattggttaaggaatctactaatagaagttttgtctttgaaatataagatgttactctttgatcaagtaatgattacacaactttttaaataaaaact 16685754  T
Q  168 tacttgttttggatgattaa 187  Q
    ||||| ||||||||| ||||    
T  16685753 tacttattttggatgcttaa 16685734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 17660089 - 17659970
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttaca-tttgatcaagtaataattacacaacttttt-cattaaaact 167  Q
    |||| |||||||| ||||||| ||||||| || ||||||  |||||| |||||||||  |||||||||||||| |||||||||||||||  || ||||||    
T  17660089 ggcattggttaaggaatctactaatagaagttttgtctttgaaatataagatgttactctttgatcaagtaatgattacacaactttttaaataaaaact 17659990  T
Q  168 tacttgttttggatgattaa 187  Q
    ||||| ||||||||| ||||    
T  17659989 tacttattttggatgcttaa 17659970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 43626464 - 43626345
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    |||| ||||||||||| |||||| ||||| ||||||||||| || ||||||||  ||| || ||||||||||||||||| |||||||| |||| ||| ||    
T  43626464 aatgattaagaaatcttcaaataaaaattttgtcttgaaaaaattagatgttattttttataaagtaataattacacaattttttcataaaaatttattt 43626365  T
Q  173 gttttggatgattaagcatt 192  Q
     |||| |||| |||| ||||    
T  43626364 attttagatgtttaaccatt 43626345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 43 - 177
Target Start/End: Complemental strand, 8746282 - 8746149
Alignment:
Q  43 aagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaata 142  Q
    ||||||||||||||| ||| |   ||||||| |||||||| || |||| |||| ||||| ||||||| ||||||   ||||||| ||||||||| ||||     
T  8746282 aagggtcttgttaactggtactctcaaggcattggttaaggaa-ctactaataaaaattttgtcttgtaaatatagaatgttacttttgatcaaataatg 8746184  T
Q  143 attacacaactttttcattaaaacttacttgtttt 177  Q
    |||| ||||||||||||| ||||||||||| ||||    
T  8746183 attatacaactttttcataaaaacttacttatttt 8746149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 221
Target Start/End: Original strand, 31850719 - 31850893
Alignment:
Q  48 tcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattac 147  Q
    ||||| |||||||||||  ||  ||||||||||| ||||| | ||||| ||||| ||||||  |||||| ||||||||| ||| || || |||| |||||    
T  31850719 tcttgctaaccggtgccctcagagcaatggttaaaaaatccataaataaaaattttgtcttagaaatataagatgttacttttaataaaataatgattac 31850818  T
Q  148 acaactttttcat-taaaacttacttgttttggatgattaagcattgcccttgaagcactggttaaccttctcca 221  Q
    | || ||||||||  |||||||||||||||| |||| |||| |||| || ||| ||||||  ||||| |||||||    
T  31850819 ataattttttcataaaaaacttacttgttttagatgcttaaccattacctttggagcactaattaacattctcca 31850893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 1521199 - 1521323
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    |||||||||||||||||||| ||||||| ||| ||||| || ||| | ||||||| ||||||  |   || ||||| ||| ||||||||  |||||||||    
T  1521199 caatggttaagaaatctacagatagaaagtctttcttggaattataaaatgttacttttgataca---atgattacgcaattttttcatggaaacttact 1521295  T
Q  172 tgttttggatgattaagcattgcccttg 199  Q
    ||||||||||| |||| |||||||||||    
T  1521296 tgttttggatgtttaaccattgcccttg 1521323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 1309720 - 1309834
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    |||||||||| |||||||||||||||||| | |||| ||||||| | | ||||| ||| ||||| |||  ||||||||| |||||||| |||| ||| ||    
T  1309720 aatggttaaggaatctacaaatagaaattttatcttaaaaatataatacgttactttttatcaaataactattacacaattttttcataaaaatttattt 1309819  T
Q  173 gttttggatgattaa 187  Q
     ||||||||| ||||    
T  1309820 attttggatgtttaa 1309834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 187
Target Start/End: Original strand, 41064292 - 41064415
Alignment:
Q  68 aaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatg----agatgttacatttgatcaagtaataattacacaactttttcattaa 163  Q
    |||| ||||||||||  || || ||||||||||| | ||||||||||||     ||||||||| ||||||||||||||  ||| |||||||||| |||||    
T  41064292 aaggtaatggttaagggatttataaatagaaattttatcttgaaaatatatataagatgttacttttgatcaagtaatggttagacaacttttttattaa 41064391  T
Q  164 aacttacttgttttggatgattaa 187  Q
    |||||| || ||||||||| ||||    
T  41064392 aacttatttattttggatgcttaa 41064415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 31487725 - 31487820
Alignment:
Q  92 aatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaa 187  Q
    |||||||||| | ||||| |||||| ||||||||  ||| || ||||||||||||||||| |||||| | |||||||| || ||||||||| ||||    
T  31487725 aatagaaattttatcttggaaatataagatgttattttttattaagtaataattacacaattttttcttaaaaacttatttattttggatgtttaa 31487820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 34993091 - 34993146
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgtta 125  Q
    ||||||||||||| |||||||||||| ||||| |||||||||||||| ||||||||    
T  34993091 ggcaatggttaaggaatctacaaatataaattttgtcttgaaaatataagatgtta 34993146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 26241575 - 26241705
Alignment:
Q  47 gtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataatta 146  Q
    |||||| | ||||||||||  | |||||||||||||||||| | || ||||| || ||| ||| |||  | | ||||||||||||||||| |||||||||    
T  26241575 gtcttgcttaccggtgccttaagggcaatggttaagaaatccaaaagtagaagttttgttttggaaacgtaatatgttacatttgatcaaataataatta 26241674  T
Q  147 cacaactttttcattaaaacttacttgtttt 177  Q
     || |||||||  | |||| |||||||||||    
T  26241675 tactactttttattaaaaagttacttgtttt 26241705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 187
Target Start/End: Complemental strand, 42888433 - 42888306
Alignment:
Q  60 gtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttca 159  Q
    ||||| |||||  |||||||||| |||||||||||| |  || |  ||||||||||| ||||||| | |||||| ||||||| ||| ||||| ||||  |    
T  42888433 gtgcccccaagataatggttaaggaatctacaaataaattttttaacttgaaaatataagatgttgcttttgataaagtaatgattgcacaaattttcta 42888334  T
Q  160 ttaaaacttacttgttttggatgattaa 187  Q
    | ||||||||||| |||| |||| ||||    
T  42888333 tgaaaacttacttattttagatgtttaa 42888306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 18757006 - 18756912
Alignment:
Q  47 gtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaat 141  Q
    |||||| ||||| |||||  || |||| || ||||| |||||||||||||||||| ||||||| |||||  |  |||||| ||||||||||||||    
T  18757006 gtcttgctaaccagtgccctcatggcattgattaaggaatctacaaatagaaattttgtcttgcaaataaaatgtgttacttttgatcaagtaat 18756912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 31249622 - 31249568
Alignment:
Q  81 agaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatca 135  Q
    ||||||||| ||||| ||||| |||||||||||||| ||||||||| ||||||||    
T  31249622 agaaatctataaatataaattttgtcttgaaaatataagatgttacttttgatca 31249568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 45907033 - 45907134
Alignment:
Q  76 ggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgtt 175  Q
    ||||||| |||||| |||||||  || ||||||| |||||| |  ||| || ||| |||||||||||||||||  ||||||| || ||||||||||| ||    
T  45907033 ggttaaggaatctataaatagattttttgtcttgtaaatataaactgtcactttttatcaagtaataattacattactttttaataaaaacttacttctt 45907132  T
Q  176 tt 177  Q
    ||    
T  45907133 tt 45907134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 39786447 - 39786531
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttt 156  Q
    ||||||||||| |||||| |||||||||   |||||||||||||| || | | || |||||| || |||||||||||| ||||||    
T  39786447 caatggttaaggaatctataaatagaaaacttgtcttgaaaatataagttttaacttttgattaaataataattacactactttt 39786531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 21515131 - 21515032
Alignment:
Q  78 ttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgtttt 177  Q
    ||||| |||||| ||||||||||| |  | ||||||||  ||||||||| ||| ||||| ||||||||||||| |||||  |  ||||||||||| ||||    
T  21515131 ttaaggaatctataaatagaaattttaacatgaaaatacaagatgttacttttaatcaaataataattacacaccttttaaaccaaaacttacttatttt 21515032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 23080658 - 23080713
Alignment:
Q  110 aaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaa 165  Q
    ||||||| ||||||||| |||||||||||||| |||||| || |||||||| ||||    
T  23080658 aaaatataagatgttacttttgatcaagtaatgattacataattttttcataaaaa 23080713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 23317839 - 23317894
Alignment:
Q  118 agatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttg 173  Q
    ||||||||| ||||||||||| || ||||||| ||||||| || ||||||||||||    
T  23317839 agatgttacttttgatcaagttatgattacaccacttttttatgaaaacttacttg 23317894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 24937976 - 24937843
Alignment:
Q  45 gggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgtt-acatttgatcaagtaataa 143  Q
    |||||||| ||||| |||||  || ||||||||||||| || ||| ||||||||| | ||| || ||||||| |||| || || ||| || |||||||||    
T  24937976 gggtcttgctaaccagtgccctcagggcaatggttaaggaaactataaatagaaaatttgttttaaaaatat-agattttgacttttaattaagtaataa 24937878  T
Q  144 ttacacaactttttcattaaaacttacttgttttgg 179  Q
    |||||| ||||||| || |||| |||||| ||||||    
T  24937877 ttacaccacttttt-ataaaaagttacttattttgg 24937843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 18037851 - 18037921
Alignment:
Q  78 ttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattaca 148  Q
    |||||||||| | ||||| ||||| ||| |||||||||| |  |||||| ||||||||| |||||||||||    
T  18037851 ttaagaaatccataaataaaaattttgttttgaaaatataaattgttacttttgatcaaataataattaca 18037921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 41760332 - 41760482
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    |||| |||||||  || ||| ||||||||||| |||||| ||||| | || | |||  ||| |||||||||| ||||||||||||||| || ||| ||||    
T  41760332 ggcactggttaaagaaactaaaaatagaaattatgtcttaaaaatgtaagtttttattttttatcaagtaattattacacaactttttaataaaatctta 41760431  T
Q  170 cttgttttggatgattaagcattgcccttgaagcactggttaaccttctcc 220  Q
     |  ||||||||| |||| || || || |||| ||||  ||||| ||||||    
T  41760432 ttctttttggatgcttaaccaatgtccatgaaacactatttaacattctcc 41760482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 220
Target Start/End: Original strand, 7833770 - 7833887
Alignment:
Q  103 tgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaag 202  Q
    |||||||||||||| |  |||||  ||||| ||| |||| ||| ||| ||||||| || ||| |||||||||||||| || |||| || |||||| |  |    
T  7833770 tgtcttgaaaatataaactgttatttttgaccaactaattattgcactactttttaataaaatcttacttgttttggctgcttaaccaatgccctcgggg 7833869  T
Q  203 cactggttaaccttctcc 220  Q
    || |||||||| ||||||    
T  7833870 cattggttaacattctcc 7833887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 47445349 - 47445454
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    |||| |||||||| ||||   ||||||||||| ||  |||||||||| || | |||| |||||| |||||||||||| || | ||||| || ||||||||    
T  47445349 ggcactggttaaggaatccttaaatagaaattttgctttgaaaatataagtttttacttttgatgaagtaataattaaactatttttttataaaaactta 47445448  T
Q  170 cttgtt 175  Q
    | ||||    
T  47445449 catgtt 47445454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 8117451 - 8117539
Alignment:
Q  84 aatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    |||||| |||||||| || |||||||||||||| |  |||||  ||| || || |||||||||||  ||||||| || |||||||||||    
T  8117451 aatctataaatagaatttatgtcttgaaaatataaattgttattttttattaaataataattacattactttttaataaaaacttactt 8117539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 11740362 - 11740462
Alignment:
Q  78 ttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgtttt 177  Q
    ||||| ||||||  ||||||||   |||||||||||||| |  |||||| ||||||||| |||| ||||||| ||||||| || |||  |||||| ||||    
T  11740362 ttaaggaatctaataatagaaaaattgtcttgaaaatataaactgttacttttgatcaactaattattacaccactttttaataaaattttacttctttt 11740461  T
Q  178 g 178  Q
    |    
T  11740462 g 11740462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 30095438 - 30095394
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatat 116  Q
    ||||| |||||||||||||||||||||| |  |||||||||||||    
T  30095438 caatgattaagaaatctacaaatagaaaattagtcttgaaaatat 30095394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 44648931 - 44649060
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||| | ||||||| |||||| ||||||| |||||||||||||||||| ||||||||    
T  44648931 ggcaatggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttgataaagtaatgattacacaactttttcatgaaaactta 44649030  T
Q  170 cttgttttggatgattaagcattgcccttg 199  Q
     |||||||||||| |||| |||||||||||    
T  44649031 tttgttttggatgcttaatcattgcccttg 44649060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 42 - 182
Target Start/End: Complemental strand, 3137548 - 3137408
Alignment:
Q  42 aaagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaat 141  Q
    ||||||||||| ||||| |||||  || |||||||||||||||||  | ||||||||||| |||||||||||| | ||||||||| ||||||||||||||    
T  3137548 aaagggtcttgctaaccagtgccctcagggcaatggttaagaaattcagaaatagaaattttgtcttgaaaatgtaagatgttacttttgatcaagtaat 3137449  T
Q  142 aattacacaactttttcattaaaacttacttgttttggatg 182  Q
     ||||||||||||||||||  ||||||| ||||||||||||    
T  3137448 tattacacaactttttcatataaacttatttgttttggatg 3137408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 10029281 - 10029165
Alignment:
Q  71 gcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttac 170  Q
    ||||||||||||||||||||||||| ||||| | ||||| |||||| ||||||||| |||||||||||||| |||| ||||||||||||| |||| ||||    
T  10029281 gcaatggttaagaaatctacaaataaaaattttatcttggaaatataagatgttacttttgatcaagtaatgattatacaactttttcataaaaatttac 10029182  T
Q  171 ttgttttggatgattaa 187  Q
    ||| |||||||| ||||    
T  10029181 ttgatttggatgcttaa 10029165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 20542533 - 20542356
Alignment:
Q  44 agggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataa 143  Q
    ||||||||| ||| | |||||  || |||| |||||||| ||||||||||||||||||  |||||| |||||| ||||||||| |||||| ||||||| |    
T  20542533 agggtcttgctaaacagtgccctcagggcattggttaaggaatctacaaatagaaatttcgtcttggaaatataagatgttacttttgattaagtaatga 20542434  T
Q  144 ttacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcactggttaaccttctcca 221  Q
    |||||||  |||||| | |||||||||| |||||||||| |||| || ||||||||  |||| ||||| | |||||||    
T  20542433 ttacacacttttttcttaaaaacttactcgttttggatgcttaaccaatgcccttggggcacgggttagcattctcca 20542356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 212
Target Start/End: Complemental strand, 600492 - 600350
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    ||||||| ||||| |||||||||||| |  || || |||| |||||| ||||||||| |||||| ||||||| ||| |||||||||||||| ||||||||    
T  600492 ggcaatgattaaggaatctacaaataaattttttggcttggaaatataagatgttacttttgataaagtaatgattgcacaactttttcatgaaaactta 600393  T
Q  170 cttgttttggatgattaagcattgcccttgaagcactggttaa 212  Q
     ||||||| |||| |||| |||||| |||| ||||||||||||    
T  600392 tttgttttagatgtttaaccattgcacttggagcactggttaa 600350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 18200677 - 18200791
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||| | ||||||| |||||| ||||||| ||||||||| |||||||| ||| |||||||    
T  18200677 aatggttaagaaatctacaaataaaaattttgtcttaaaaatataacatgttacttttgattaagtaatgattacacaattttttcataaaagcttactt 18200776  T
Q  173 gttttggatgattaa 187  Q
     ||||||||| ||||    
T  18200777 attttggatgcttaa 18200791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 35901412 - 35901526
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    |||||||||| |||||||||||||||||| ||| |||||||| | ||||||||| ||| || || |||| ||| |||||||||||||| |||||||||||    
T  35901412 aatggttaaggaatctacaaatagaaattttgttttgaaaatgtaagatgttacttttaattaaataatgattgcacaactttttcataaaaacttactt 35901511  T
Q  173 gttttggatgattaa 187  Q
    |||||||||| ||||    
T  35901512 gttttggatgcttaa 35901526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 3347506 - 3347590
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttt 156  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||| || ||||||||||||||||||||||    
T  3347506 caatggttaagaaatctacaaataaaaattttgtcttgaaaatataagatgttacttttaataaagtaataattacacaactttt 3347590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 181
Target Start/End: Original strand, 42361481 - 42361618
Alignment:
Q  44 agggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataa 143  Q
    ||||||||||||||||||| || || || |||||||||  ||||||  |||||||||| ||||||  |||||| |||||||   ||| || ||||||  |    
T  42361481 agggtcttgttaaccggtgtcttcagggtaatggttaaagaatctattaatagaaattttgtctttgaaatataagatgttcttttttataaagtaaaga 42361580  T
Q  144 ttacacaactttttcattaaaacttacttgttttggat 181  Q
    || |||||||||||||| ||||||||||||||||||||    
T  42361581 ttgcacaactttttcatgaaaacttacttgttttggat 42361618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 220
Target Start/End: Original strand, 17720176 - 17720322
Alignment:
Q  75 tggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgt 174  Q
    |||||||  |||||| ||||||||||  | |||||||||||| ||||||||  |||||||| ||||| |||||||||||||||||| |||||||  ||||    
T  17720176 tggttaaagaatctataaatagaaatattttcttgaaaatataagatgttatttttgatcatgtaatgattacacaactttttcatgaaaacttgtttgt 17720275  T
Q  175 tttggatgat--taagcattgcccttgaagcactggttaaccttctcc 220  Q
    |||||||| |  ||| || ||||||||  |||||||||||| ||||||    
T  17720276 tttggatgcttataaccaatgcccttg-ggcactggttaacattctcc 17720322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 223
Target Start/End: Complemental strand, 11151068 - 11150890
Alignment:
Q  44 agggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataa 143  Q
    ||||||||  |||||||||||  || ||||||| ||||| |||||||||||| || || ||||||  |||||| ||||||||| ||||||||| |||| |    
T  11151068 agggtcttcctaaccggtgccctcagggcaatgattaaggaatctacaaataaaatttttgtcttagaaatataagatgttacttttgatcaaataatga 11150969  T
Q  144 ttacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcactggttaaccttctccata 223  Q
    |||||||| |||||  | ||||||||||| ||||| ||| |||| || |||||||   ||| |||||| | |||||||||    
T  11150968 ttacacaa-ttttttttaaaaacttacttattttgaatgcttaaccaatgcccttagggcagtggttagcattctccata 11150890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 27506920 - 27507068
Alignment:
Q  49 cttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattaca 148  Q
    |||| |||| ||||||  |||| ||||||||||  |||||||||||| |||||  || ||| |||||| |||| |||| |||||| || |||||||||||    
T  27506920 cttgctaactggtgccctcaagacaatggttaaagaatctacaaataaaaatt--gttttggaaatataagatattacttttgataaaataataattaca 27507017  T
Q  149 caactttttcattaaaacttacttgttttggatgattaagcattgcccttg 199  Q
    |||||||||||| |||| ||||||||||| ||||  ||| ||||| |||||    
T  27507018 caactttttcatgaaaatttacttgttttagatgcgtaaccattgtccttg 27507068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 547181 - 547075
Alignment:
Q  75 tggttaagaaatctacaaatagaaattctgtcttgaaaatatgagat----gttacatttgatcaagtaataattacacaactttttcattaaaacttac 170  Q
    ||||||||||||   |||||||||||| | |||||||||||| ||||    ||||  ||||||||| ||||||||||||||||||||||||||||| |||    
T  547181 tggttaagaaattcgcaaatagaaattttatcttgaaaatataagataaatgttatttttgatcaaataataattacacaactttttcattaaaacgtac 547082  T
Q  171 ttgtttt 177  Q
    |||||||    
T  547081 ttgtttt 547075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 18045406 - 18045313
Alignment:
Q  67 caaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcat 160  Q
    |||||||||||||||  ||||||||| || ||||| |||||||||||||| | ||||||| |||| ||| ||||||||||||||| ||||||||    
T  18045406 caaggcaatggttaaagaatctacaactaaaaattttgtcttgaaaatataatatgttacttttgttcatgtaataattacacaattttttcat 18045313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 41727013 - 41726888
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    |||||||||| |||||||||||| ||||| ||||||| |||||| | ||||||  ||| || ||||||| |||||| |  |||||||| |||||||||||    
T  41727013 aatggttaaggaatctacaaataaaaattttgtcttggaaatataaaatgttattttttataaagtaatgattacatagttttttcataaaaacttactt 41726914  T
Q  173 gttttggatgattaagcattgccctt 198  Q
     |||| |||| |||| ||||||||||    
T  41726913 attttagatgcttaaccattgccctt 41726888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 40489969 - 40489842
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    ||||||||||||| ||||||||| || ||||| || |||| |||||| | |||||||  ||||| ||||||| |||||| ||||||||||| ||||||||    
T  40489969 ggcaatggttaaggaatctacaa-taaaaattttgccttgtaaatataaaatgttactattgataaagtaatgattacataactttttcataaaaactta 40489871  T
Q  170 cttgttttggatgattaagcattgccctt 198  Q
     ||||||| |||  |||| ||||||||||    
T  40489870 tttgttttagatatttaaccattgccctt 40489842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 220
Target Start/End: Complemental strand, 43917693 - 43917557
Alignment:
Q  84 aatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatga 183  Q
    |||||||||||| || || |||||||||||||| ||  ||||| ||| ||||| |||||||||||||| ||||| || |||| ||||||||||||||||     
T  43917693 aatctacaaataaaatttttgtcttgaaaatataaggcgttacttttaatcaaataataattacacaatttttttataaaaatttacttgttttggatgc 43917594  T
Q  184 ttaagcattgcccttgaagcactggttaaccttctcc 220  Q
    |||| || |  |||| | |||||||||| | ||||||    
T  43917593 ttaaccaatatccttaatgcactggttagcattctcc 43917557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 6270143 - 6270249
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    |||||| |||||| ||||||||| || ||||| ||||||| |||||| || |||||  |||||| ||||||| ||||||||||||||| || ||||||||    
T  6270143 ggcaatagttaaggaatctacaattaaaaattttgtcttggaaatataaggtgttat-tttgataaagtaatgattacacaacttttttatgaaaactta 6270241  T
Q  170 cttgtttt 177  Q
    ||||||||    
T  6270242 cttgtttt 6270249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 181
Target Start/End: Original strand, 23425231 - 23425371
Alignment:
Q  45 gggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagat----gttacatttgatcaagtaa 140  Q
    ||||||||||||| ||||||  |   ||| ||||||||||||| | ||||| ||||| |||||  ||||||| ||||    ||||  ||||||||| |||    
T  23425231 gggtcttgttaactggtgccctcggtgcattggttaagaaatccataaataaaaattttgtctcaaaaatataagataaatgttatttttgatcaaataa 23425330  T
Q  141 taattacacaactttttcattaaaacttacttgttttggat 181  Q
    | |||||||||||||||||||||||| ||||||||||||||    
T  23425331 tgattacacaactttttcattaaaacgtacttgttttggat 23425371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 34678221 - 34678351
Alignment:
Q  91 aaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagca 190  Q
    ||||||||| | |||||||||||| | | ||||||| ||||||||||||||||||||| || ||||| ||||||| || ||||||||| ||| |||| ||    
T  34678221 aaatagaaaatttgtcttgaaaatgtaaaatgttacttttgatcaagtaataattacataa-ttttttattaaaagttgcttgttttgaatgcttaacca 34678319  T
Q  191 ttgcccttgaagcactggttaaccttctccat 222  Q
    ||||| ||| |||| | |||| | ||||||||    
T  34678320 ttgcctttggagcaatagttagcattctccat 34678351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 32881226 - 32881116
Alignment:
Q  77 gttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttt 176  Q
    ||||||||||||||||||| ||||| |||||| ||||||| |||| |||  ||| ||||||| || |||||||||| ||||  | ||||||||||| |||    
T  32881226 gttaagaaatctacaaataaaaattttgtcttaaaaatataagatattattttttatcaagttatgattacacaacattttattaaaaacttacttattt 32881127  T
Q  177 tggatgattaa 187  Q
    |||||| ||||    
T  32881126 tggatgtttaa 32881116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 195
Target Start/End: Complemental strand, 1342427 - 1342317
Alignment:
Q  84 aatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatga 183  Q
    ||||| |||||||||||| | ||||| |||||| ||||||||| |||||| ||  ||| ||||||||||||||| || ||||||||||| |||| ||||     
T  1342427 aatcttcaaatagaaattttatcttggaaatataagatgttacttttgataaac-aatgattacacaacttttttatgaaaacttacttattttagatgc 1342329  T
Q  184 ttaagcattgcc 195  Q
    |||| |||||||    
T  1342328 ttaaccattgcc 1342317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 23725684 - 23725759
Alignment:
Q  136 agtaataattacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcactggtta 211  Q
    |||||| || ||||||||||||||| ||||||||||||||||||||| |||| || |||||| |  ||||||||||    
T  23725684 agtaatgatcacacaactttttcatgaaaacttacttgttttggatgcttaaccaatgccctgggggcactggtta 23725759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 25250401 - 25250321
Alignment:
Q  89 acaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttc-attaaaactt 168  Q
    ||||||||||||| |||||||||||||| | ||||||  |||||||||||||| |||  || |||||||| ||||||||||    
T  25250401 acaaatagaaattttgtcttgaaaatataatatgttatttttgatcaagtaatgattttaccactttttctattaaaactt 25250321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 33621478 - 33621340
Alignment:
Q  78 ttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgtttt 177  Q
    ||||| |||||||||||| ||||| |||||| ||||||| | || |||| |||||||||||||| |||  |||| |||     ||||| |||||||||||    
T  33621478 ttaaggaatctacaaataaaaattttgtcttaaaaatataaaattttacttttgatcaagtaattatt--acaatttt----ataaaatttacttgtttt 33621385  T
Q  178 ggatgattaagcattgcccttgaagcactggttaaccttctccat 222  Q
    ||||| |||| || |||||||| |||| || ||| | ||||||||    
T  33621384 ggatgtttaaccaatgcccttggagcattgattagcattctccat 33621340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 12981679 - 12981605
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataatta 146  Q
    ||||||||||| |||  | || |||||||| |||||||||||| | ||||||||||||||| |||||||| ||||    
T  12981679 caatggttaaggaattcaaaattagaaattttgtcttgaaaatgtaagatgttacatttgaccaagtaatgatta 12981605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 37561513 - 37561579
Alignment:
Q  91 aaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaacttttt 157  Q
    ||||||||||| | | |||||||||| |||| |||| ||||||||||||||||| |||||| |||||    
T  37561513 aaatagaaattttattttgaaaatataagattttacttttgatcaagtaataatcacacaatttttt 37561579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 40607418 - 40607332
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttt 156  Q
    ||||||||||||||||| || ||||||||| | | |||| ||||||| || | | || |||||| ||||||||||||||| ||||||    
T  40607418 ggcaatggttaagaaatttataaatagaaaatttatcttaaaaatataagttttgacttttgattaagtaataattacactactttt 40607332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 44947453 - 44947372
Alignment:
Q  83 aaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaa 165  Q
    ||||||| ||||| ||||| |||||||||||||| | ||||||| |||||| ||||| | |||| ||||||||||||| ||||    
T  44947453 aaatctataaataaaaatt-tgtcttgaaaatataaaatgttacttttgataaagtattgattatacaactttttcataaaaa 44947372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 18131311 - 18131203
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    ||||||| |||||||||| | ||||||||| | |||||||||||||| || | | ||   |||| ||||||||||||||| || |||| || |||| |||    
T  18131311 ggcaatgattaagaaatccataaatagaaaatttgtcttgaaaatataagttttgactactgattaagtaataattacactac-ttttaataaaaagtta 18131213  T
Q  170 cttgttttgg 179  Q
    ||||||||||    
T  18131212 cttgttttgg 18131203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 39534107 - 39534231
Alignment:
Q  45 gggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataat 144  Q
    |||||||||||||||||||| ||  ||||  ||||||  |||||| || ||||| ||||||||||||||||| |  ||| ||  || |||||||||||||    
T  39534107 gggtcttgttaaccggtgcccccg-ggcatgggttaaagaatctataattagaatttctgtcttgaaaatataaactgtcaccctttatcaagtaataat 39534205  T
Q  145 tacacaactttttcattaaaacttac 170  Q
    ||||  ||||||| || |||| ||||    
T  39534206 tacattactttttaataaaaatttac 39534231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 12201891 - 12201835
Alignment:
Q  91 aaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattac 147  Q
    ||||||||||| ||||||| |||||| || |||||| |||||||||||| |||||||    
T  12201891 aaatagaaattttgtcttggaaatataagctgttacttttgatcaagtattaattac 12201835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 12446319 - 12446263
Alignment:
Q  91 aaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattac 147  Q
    ||||||||||| ||||||| |||||| || |||||| |||||||||||| |||||||    
T  12446319 aaatagaaattttgtcttggaaatataagctgttacttttgatcaagtattaattac 12446263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 18647470 - 18647581
Alignment:
Q  86 tctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgatt 185  Q
    |||||||||||||||| | |||| ||||||| ||||||||  |||||| || | || ||||||||| ||||||||  ||| |||||||||||  ||| ||    
T  18647470 tctacaaatagaaattttatcttaaaaatataagatgtta-ttttgataaaatgatgattacacaattttttcatggaaatttacttgttttaaatgctt 18647568  T
Q  186 aagcattgccctt 198  Q
    || |||| |||||    
T  18647569 aaccattaccctt 18647581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 44655252 - 44655336
Alignment:
Q  95 agaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttgg 179  Q
    ||||||| ||||||| ||| || || ||||||| |||| |||||||||||||||| |||||||  | |||||||| || ||||||    
T  44655252 agaaattttgtcttggaaaaataagttgttacaattgaccaagtaataattacactactttttattaaaaacttatttattttgg 44655336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 4989815 - 4989728
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaacttttt 157  Q
    |||||||||||||||| ||| ||||| ||| | |||||||||||||| || | | |  ||||||||||||| ||||||| || |||||    
T  4989815 ggcaatggttaagaaaactataaataaaaaatttgtcttgaaaatataagttttgatttttgatcaagtaacaattacataatttttt 4989728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 31331105 - 31330970
Alignment:
Q  86 tctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaacttt-ttcattaaaacttacttgttttggatgat 184  Q
    |||||||||||||||| | ||||  |||||| ||||||||| |||||||||  | | ||||||||||||| || |  || | || ||||||||||||| |    
T  31331105 tctacaaatagaaattttatcttcgaaatataagatgttacttttgatcaaacagtgattacacaactttctttaagaacatttgcttgttttggatgct 31331006  T
Q  185 taagcattgcccttgaagcactggttaaccttctcc 220  Q
    ||| || || ||||  | ||||||||||| ||||||    
T  31331005 taaccaatgtccttagaacactggttaacattctcc 31330970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 40604241 - 40604282
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaat 114  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||    
T  40604241 aatggttaagaaatctacaaatataaattttgttttgaaaat 40604282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 10652793 - 10652841
Alignment:
Q  129 ttgatcaagtaataattacacaactttttcattaaaacttacttgtttt 177  Q
    ||||| ||||||| |||||||||| ||||||| |||| |||||||||||    
T  10652793 ttgataaagtaatgattacacaacattttcataaaaatttacttgtttt 10652841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 23797507 - 23797626
Alignment:
Q  91 aaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactt-acttgttttggatgattaagc 189  Q
    |||||||| || | |||||||||||| |  ||| ||| |||| |||||||||||| ||  |||||| |||||||| || ||||||||| | || |||| |    
T  23797507 aaatagaagttttatcttgaaaatataaattgtcacacttgaccaagtaataatttcatcactttt-cattaaaaatttacttgttttagttgtttaacc 23797605  T
Q  190 attgcccttgaagcactggtt 210  Q
    ||||||||| | |||||||||    
T  23797606 attgcccttaatgcactggtt 23797626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 70 - 213
Target Start/End: Complemental strand, 49261900 - 49261757
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    |||| |||||||||||| |||||||||||||| ||||||| |||||| ||||||||| ||||||  |||||||||||||||| |||||||| ||||  ||    
T  49261900 ggcactggttaagaaatatacaaatagaaattttgtcttgtaaatataagatgttacttttgatagagtaataattacacaattttttcatgaaaatgta 49261801  T
Q  170 cttgttttggatgattaagcattgcccttgaagcactggttaac 213  Q
    ||||||||||||| |||| |||||| |||| |||||||||||||    
T  49261800 cttgttttggatgcttaaccattgctcttggagcactggttaac 49261757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 44698335 - 44698214
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| || |||| ||||||||| |||||||| |||||||| ||    
T  44698335 aatggttaagaaatctacaaatagaaattttgtcttgaaaatataagatgttacttttgataaaataatgattacacaattttttcataaaaacttattt 44698236  T
Q  173 gttttggatgattaagcattgc 194  Q
    ||||| |||  |||| ||||||    
T  44698235 gttttagatatttaaccattgc 44698214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 4020216 - 4020109
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    ||||||||||| |||||||||||||||||| |||||||||||||| | ||||||  |||||| ||||||| ||||||||| |||||||| ||||||||||    
T  4020216 caatggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttaattttgattaagtaattattacacaattttttcataaaaacttact 4020117  T
Q  172 tgttttgg 179  Q
    ||||||||    
T  4020116 tgttttgg 4020109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 43 - 187
Target Start/End: Original strand, 6785760 - 6785905
Alignment:
Q  43 aagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaata 142  Q
    |||||| ||| ||||| |||||  || ||||||||||||| | ||||||||||||| || |||||||||||||| | ||||||| ||||||||||||||     
T  6785760 aagggtattgctaaccagtgccctcagggcaatggttaaggattctacaaatagaatttttgtcttgaaaatataaaatgttacttttgatcaagtaatg 6785859  T
Q  143 attacacaac-tttttcattaaaacttacttgttttggatgattaa 187  Q
    |||||||| | |||||||| ||||||| |||||||| |||| ||||    
T  6785860 attacacatcttttttcatgaaaacttgcttgtttttgatgtttaa 6785905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 48338912 - 48338783
Alignment:
Q  91 aaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagca 190  Q
    ||||||||||| | ||||| |||||| ||||||||  |||||| ||||||| ||||||||||||||| || ||||||||||||||||||||| |||| ||    
T  48338912 aaatagaaattttatcttggaaatataagatgttatttttgataaagtaattattacacaacttttttataaaaacttacttgttttggatgcttaacca 48338813  T
Q  191 ttgcccttgaagcactggttaaccttctcc 220  Q
    ||||||||  |||||| |||| | ||||||    
T  48338812 ttgcccttagagcactagttagcattctcc 48338783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 29032525 - 29032425
Alignment:
Q  77 gttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttt 176  Q
    |||||| | |||||||| ||||||| |||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||    
T  29032525 gttaaggattctacaaacagaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattacacaactttttcataaaaacttgcttgttt 29032426  T
Q  177 t 177  Q
    |    
T  29032425 t 29032425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 42437681 - 42437858
Alignment:
Q  42 aaagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaat 141  Q
    ||||||||||| ||||| |||||  || ||||||||||||| | |||||||||||||||| | ||||| || ||| ||||||||| |||||||  |||||    
T  42437681 aaagggtcttgataaccagtgccctcagggcaatggttaaggattctacaaatagaaattttatcttggaattataagatgttacttttgatc--gtaat 42437778  T
Q  142 aattacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcactggttaaccttctcca 221  Q
     |||||| ||||||||||| |||  || | ||||||||||| |||| || ||||||||  |||||||||| | |||||||    
T  42437779 gattacataactttttcataaaattttgcgtgttttggatgcttaaccaatgcccttggggcactggttagcattctcca 42437858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 50958960 - 50958857
Alignment:
Q  90 caaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagc 189  Q
    |||||||||||| ||||||| |||||| | ||||||  |||||||||| ||| ||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  50958960 caaatagaaattttgtcttggaaatataacatgttatttttgatcaagaaatgattacacaattttttcataaaaacttacttgttttggatgcttaagc 50958861  T
Q  190 attg 193  Q
    ||||    
T  50958860 attg 50958857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 635700 - 635826
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    ||||||||||| |||||||||||||||||| ||||||||| | || ||||||||| |||||| || |||| ||||||||||||||  || ||||||||      
T  635700 caatggttaaggaatctacaaatagaaattttgtcttgaataaataagatgttacttttgattaaataatgattacacaacttttcaataaaaacttata 635799  T
Q  172 tgttttggatgattaagcattgccctt 198  Q
    ||||||||||| |||| || |||||||    
T  635800 tgttttggatgcttaaccaatgccctt 635826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 221
Target Start/End: Complemental strand, 38359167 - 38359016
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    ||||||||||||| |||||| ||||| ||||| | ||||  |||||| ||||||||  |||||| ||||||  ||||| || ||||||||| ||||||||    
T  38359167 ggcaatggttaaggaatctataaataaaaattttatcttagaaatataagatgttaattttgataaagtaacgattacccatctttttcatgaaaactta 38359068  T
Q  170 cttgttttggatgattaagcattgcccttgaagcactggttaaccttctcca 221  Q
    ||| |||| |||| |||| |||||||||||| ||| | |||||| |||||||    
T  38359067 cttattttagatgtttaaccattgcccttgaggcattagttaacattctcca 38359016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 11676727 - 11676857
Alignment:
Q  68 aaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaact 167  Q
    |||||| || ||||| |||||||||||| ||||| |||||||||||||  ||| ||||| ||||||||| |||| || |||||| |||||| | ||||||    
T  11676727 aaggcattgattaaggaatctacaaatataaattttgtcttgaaaataaaagacgttacttttgatcaaataatgataacacaattttttcttgaaaact 11676826  T
Q  168 tacttgttttggatgattaagcattgccctt 198  Q
    | ||||||||||||| |||| || |||||||    
T  11676827 tgcttgttttggatgtttaaccaatgccctt 11676857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 54801336 - 54801452
Alignment:
Q  83 aaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatg 182  Q
    ||||||||| ||| ||| | | |||||||||||| ||||||||| |||| | ||||||||||||||||| |||||||| ||||||||||| ||||| |||    
T  54801336 aaatctacatataaaaaatttatcttgaaaatataagatgttacttttgctaaagtaataattacacaattttttcataaaaacttacttattttgtatg 54801435  T
Q  183 attaagcattgcccttg 199  Q
     ||||  ||||||||||    
T  54801436 cttaactattgcccttg 54801452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 187
Target Start/End: Original strand, 28709559 - 28709676
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    ||||||||||||  |||||| ||||||||||| | |||||||||||| | ||||||| ||||||||| |||| |||| |||||||||| ||  |||||||    
T  28709559 ggcaatggttaaagaatctataaatagaaattttatcttgaaaatataaaatgttacttttgatcaaataatgattatacaacttttttatagaaactta 28709658  T
Q  170 cttgttttggatgattaa 187  Q
    ||| ||||| ||| ||||    
T  28709659 cttattttgaatgcttaa 28709676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 4128724 - 4128836
Alignment:
Q  108 tgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcactg 207  Q
    ||||||||| |||| |||  |||||| ||||||| |||||||||  ||||||| ||||||||||||||||||||| |||| |||||||||||  |||| |    
T  4128724 tgaaaatataagatattatttttgataaagtaatgattacacaatattttcatgaaaacttacttgttttggatgcttaaccattgcccttggggcaccg 4128823  T
Q  208 gttaaccttctcc 220  Q
    |||| | ||||||    
T  4128824 gttagcattctcc 4128836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 44291197 - 44291374
Alignment:
Q  43 aagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaata 142  Q
    |||||||||||||||| ||||| ||  |||| |||||||| |||||| |||||||| |||||||||| |||||| |  ||| || ||| || ||||||||    
T  44291197 aagggtcttgttaaccagtgcc-ccggggcactggttaaggaatctataaatagaatttctgtcttggaaatataaactgtcactttttattaagtaata 44291295  T
Q  143 attacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcactggttaaccttctccat 222  Q
    ||||||  ||||||| || || |||||||| |||||| || |||| || |||||  |  |||||||||||| ||||||||    
T  44291296 attacattactttttaataaatacttacttcttttgg-tgcttaaccaatgccccgggggcactggttaacattctccat 44291374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 55446838 - 55446736
Alignment:
Q  84 aatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatga 183  Q
    |||||||||||| ||||| ||||||| |||||| ||||||||| ||| || ||||||| ||||||||||||||| || ||||||||||| |||| ||||     
T  55446838 aatctacaaataaaaattttgtcttggaaatataagatgttacttttaataaagtaatgattacacaacttttt-ataaaaacttacttcttttagatgt 55446740  T
Q  184 ttaa 187  Q
    ||||    
T  55446739 ttaa 55446736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 12109763 - 12109653
Alignment:
Q  77 gttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttt 176  Q
    |||||| | |||||||||||||||| ||| |||||||||| |||| |||| ||| |  |||||||||||| ||||||||||||| |||| ||  ||||||    
T  12109763 gttaaggattctacaaatagaaattatgttttgaaaatataagatattacttttaactaagtaataattatacaactttttcataaaaaattgtttgttt 12109664  T
Q  177 tggatgattaa 187  Q
    |||||| ||||    
T  12109663 tggatgcttaa 12109653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 219
Target Start/End: Original strand, 34145906 - 34146046
Alignment:
Q  78 ttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgtttt 177  Q
    ||||||||| ||| |||| ||||| ||| ||| |||||| ||||||||  ||||||||||||||||||| |||| || |||| ||||| ||||| |||||    
T  34145906 ttaagaaatttactaatataaattttgtgttggaaatataagatgttatttttgatcaagtaataattatacaatttgttca-taaaatttactagtttt 34146004  T
Q  178 ggatgattaagcattgcccttgaagcactggttaaccttctc 219  Q
    ||||| |||| || ||| |||| | ||| ||||||| |||||    
T  34146005 ggatgcttaatcaatgctcttggaacaccggttaacattctc 34146046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 8326254 - 8326151
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    ||||||||| |||||| |||||||||||| ||| || ||||||| | ||||||| |||||||||| ||| ||||||| || ||||||| |||||||| ||    
T  8326254 aatggttaataaatcttcaaatagaaattttgttttaaaaatataatatgttacttttgatcaagcaatgattacaccac-ttttcataaaaacttattt 8326156  T
Q  173 gtttt 177  Q
    |||||    
T  8326155 gtttt 8326151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 1711919 - 1711993
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataatta 146  Q
    ||||||||||| |||||| || || ||||| |||||||||||||| |||||||||||||||  ||||||||||||    
T  1711919 caatggttaaggaatctaaaattataaattttgtcttgaaaatataagatgttacatttgactaagtaataatta 1711993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 26613060 - 26613176
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaac-tttttcattaaaacttac 170  Q
    ||||||||||| |||||||||||| |  || |||||   |||||| | ||||||  ||| ||||||||||||||||| ||| ||||| || |||||||||    
T  26613060 caatggttaaggaatctacaaataaatgttttgtctcagaaatataaaatgttatttttaatcaagtaataattacataactttttttatgaaaacttac 26613159  T
Q  171 ttgttttggatgattaa 187  Q
    |||||||||||| ||||    
T  26613160 ttgttttggatgcttaa 26613176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 31494031 - 31494115
Alignment:
Q  103 tgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaa 187  Q
    ||||||| |||||| ||| ||||  ||| ||||| |||| ||||||||| |||||||| ||||||||||||||||||||| ||||    
T  31494031 tgtcttggaaatataagaagttaattttaatcaaataatgattacacaattttttcataaaaacttacttgttttggatgtttaa 31494115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 187
Target Start/End: Complemental strand, 25319562 - 25319466
Alignment:
Q  91 aaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaa 187  Q
    ||||| ||||| ||| |||||||||| | ||||||| |||||  || |||| |||||||| ||||| |||||||||||| ||||||| |||| ||||    
T  25319562 aaataaaaattttgtattgaaaatataaaatgttacttttgactaaataatgattacacaccttttacattaaaacttaattgttttagatgtttaa 25319466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 2379619 - 2379705
Alignment:
Q  91 aaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttg 178  Q
    ||||||||| |||||||||||||| | || |||| | ||| ||||||||| |||||||| ||||||| || ||||||||||| |||||    
T  2379619 aaatagaaactctgtcttgaaaatgtaagttgttcc-tttaatcaagtaagaattacactactttttaataaaaacttacttattttg 2379705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 25958060 - 25958139
Alignment:
Q  78 ttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaacttttt 157  Q
    |||||||||||||| ||| ||| | |||||| ||||||| ||||||||| |||||| ||||||  ||||||||| |||||    
T  25958060 ttaagaaatctacatataaaaaatttgtcttaaaaatataagatgttacttttgataaagtaacgattacacaatttttt 25958139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 53818884 - 53818829
Alignment:
Q  132 atcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaa 187  Q
    |||||||||| |||| |||||||||||||||||||||| || ||||||||| ||||    
T  53818884 atcaagtaatgattatacaactttttcattaaaacttatttattttggatgcttaa 53818829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 27144145 - 27144092
Alignment:
Q  45 gggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaa 98  Q
    ||||||||||||||||||||  | ||||| ||||||||||||||| ||||||||    
T  27144145 gggtcttgttaaccggtgccctcgaggcactggttaagaaatctataaatagaa 27144092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 3215147 - 3215088
Alignment:
Q  84 aatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataa 143  Q
    |||| ||||||||||| | | |||||||||||| ||||||| | ||||||||||||||||    
T  3215147 aatccacaaatagaaactttatcttgaaaatataagatgttgcttttgatcaagtaataa 3215088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 15671110 - 15671212
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    |||| |||||||| |||||| ||||| || || ||||||  |||||| |  ||| || ||| |||||||||||||||||  ||||||| || ||||||||    
T  15671110 ggcactggttaaggaatctataaataaaatttttgtcttcgaaatataaactgtcactttttatcaagtaataattacattactttttaataaaaactta 15671209  T
Q  170 ctt 172  Q
    |||    
T  15671210 ctt 15671212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 37043028 - 37043082
Alignment:
Q  119 gatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttg 173  Q
    ||||||||||||||||||||||| |||| || |||||||  | ||||||||||||    
T  37043028 gatgttacatttgatcaagtaatgattatactactttttattaaaaacttacttg 37043082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 17109533 - 17109630
Alignment:
Q  76 ggttaagaaatctacaaatagaaatt-ctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    ||||||||||| || |||||||| || || ||||| |||||| |  ||| |||||| || |||||||||||||| |||||||| || |||| ||||||    
T  17109533 ggttaagaaatttataaatagaattttctatcttggaaatataaactgtaacattttattaagtaataattacataactttttaataaaaatttactt 17109630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 33051578 - 33051658
Alignment:
Q  107 ttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaa 187  Q
    |||||||||| | || |||  ||| |||||||||| ||||| ||| ||||| ||||||||||| | |||||||||| ||||    
T  33051578 ttgaaaatataaaatattattttttatcaagtaatgattactcaatttttttattaaaacttattagttttggatgtttaa 33051658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 40574136 - 40574286
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    |||| |||||||| |||||||||||||||||| ||||||| |||||| | |||| || ||||||  ||||||||||||||||||||||||| ||||  ||    
T  40574136 ggcactggttaaggaatctacaaatagaaattttgtcttggaaatataaaatgtaacttttgatagagtaataattacacaactttttcatgaaaatgta 40574235  T
Q  170 cttgttttggatgattaagcattgcccttgaagcactggttaaccttctcc 220  Q
    ||||||||||||| |||| |||||||||||  |||||||||| | ||||||    
T  40574236 cttgttttggatgcttaaccattgcccttggggcactggttagcattctcc 40574286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 13717320 - 13717168
Alignment:
Q  47 gtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataatta 146  Q
    ||||||||||||||||||  ||  ||||| |||||| ||| |||||||||||||| |||||||||||||| | ||||||  ||| || ||||||||||||    
T  13717320 gtcttgttaaccggtgccctcagagcaatagttaaggaatatacaaatagaaattttgtcttgaaaatataaaatgttatttttaat-aagtaataatta 13717222  T
Q  147 cacaactttttcattaaaacttacttgttttggatgattaagcattgcccttga 200  Q
    || |||||||| || ||||||||||| |||| |||| |||| |||| |||||||    
T  13717221 cataactttttgatgaaaacttacttattttagatgcttaaccattacccttga 13717168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 40346825 - 40346717
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    |||||||||| |||||||| ||||||||| ||| |||||||||| ||||||||  ||||||||| |||| ||| |||||||||||||| |||||||||||    
T  40346825 aatggttaaggaatctacatatagaaattttgtattgaaaatataagatgttatttttgatcaaataatgattgcacaactttttcataaaaacttactt 40346726  T
Q  173 gttttggat 181  Q
     ||||||||    
T  40346725 attttggat 40346717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 23453463 - 23453353
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaacttttt-cattaaaacttac 170  Q
    |||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||| ||| ||||||| |    
T  23453463 caatagttaaggaatctacaaataaaaattttgtcttgaaaatataagatgttacttttgatcaaataaagattacacaactttttccataaaaacttgc 23453364  T
Q  171 ttgttttggat 181  Q
    |||||||||||    
T  23453363 ttgttttggat 23453353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 75 - 187
Target Start/End: Original strand, 4978750 - 4978862
Alignment:
Q  75 tggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgt 174  Q
    ||||||| |||||||  ||||||| || |||||||||||||| ||||||||| |||||||||||||| |||||||||| |||| || |||||||| || |    
T  4978750 tggttaaaaaatctattaatagaagttttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacatttttataaaaacttatttat 4978849  T
Q  175 tttggatgattaa 187  Q
    |||||||| ||||    
T  4978850 tttggatgtttaa 4978862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 71 - 195
Target Start/End: Original strand, 6462586 - 6462709
Alignment:
Q  71 gcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttac 170  Q
    ||||||||||| ||| ||||||||||||||||||||||  |||||| | || |||| |||||| || ||||||||| |||||||||| |||||||||||     
T  6462586 gcaatggttaaaaaa-ctacaaatagaaattctgtcttataaatataaaatattacttttgataaaataataattatacaacttttttattaaaacttat 6462684  T
Q  171 ttgttttggatgattaagcattgcc 195  Q
    |||||||| ||| |||| |||||||    
T  6462685 ttgttttgaatgcttaatcattgcc 6462709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 75 - 187
Target Start/End: Original strand, 13738393 - 13738505
Alignment:
Q  75 tggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgt 174  Q
    |||||||| |||||| ||||| ||||| ||| |||||||||| ||||||||| | |||| ||||||| ||||||||| ||||| || |||||||||||||    
T  13738393 tggttaaggaatctataaataaaaattttgttttgaaaatataagatgttacttctgataaagtaatgattacacaatttttttataaaaacttacttgt 13738492  T
Q  175 tttggatgattaa 187  Q
    |||||||| ||||    
T  13738493 tttggatgcttaa 13738505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 75 - 187
Target Start/End: Complemental strand, 18717965 - 18717853
Alignment:
Q  75 tggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgt 174  Q
    |||||||| ||| |||||||||||||| | | || ||||||| ||||||||| |||||||||||||| |||||||||||||||||| |||| ||  ||||    
T  18717965 tggttaaggaatttacaaatagaaattttattttaaaaatataagatgttacttttgatcaagtaatgattacacaactttttcatgaaaatttgtttgt 18717866  T
Q  175 tttggatgattaa 187  Q
    |||||||| ||||    
T  18717865 tttggatgcttaa 18717853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 41436443 - 41436295
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    ||||| ||||| ||| |||| ||||||||| | ||||  || ||| ||||||||  |||||| || |||| |||||||||||||||||| ||||||||||    
T  41436443 caatgattaagtaatttacatatagaaattttatcttagaagtataagatgttatttttgataaaataatgattacacaactttttcatgaaaacttact 41436344  T
Q  172 tgttttggatgattaagcattgcccttgaagcactggttaaccttctcc 220  Q
    ||||||||||| |||| ||||||| |||  |||||| ||||| ||||||    
T  41436343 tgttttggatgcttaaccattgcctttggggcactgattaacattctcc 41436295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 211
Target Start/End: Complemental strand, 4557717 - 4557550
Alignment:
Q  45 gggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataat 144  Q
    |||||||| ||| |||||||  || ||||||||||||  |||||||||||||||||| | ||||| |||||| ||| ||||  ||||||  |||||| ||    
T  4557717 gggtcttgctaagcggtgccctcagggcaatggttaaagaatctacaaatagaaattttatcttggaaatataagaagttatttttgattgagtaattat 4557618  T
Q  145 tacacaac-tttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcactggtta 211  Q
    ||| |||| |||||||| ||||||||||| | ||||||| |||| ||||||||||   ||||||||||    
T  4557617 tactcaacttttttcataaaaacttacttatcttggatgcttaaccattgcccttagggcactggtta 4557550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 187
Target Start/End: Original strand, 4996666 - 4996770
Alignment:
Q  83 aaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatg 182  Q
    |||||||  ||||||| || |||||||||||||| ||||||||| |||||||||||||| |||||||||| |||| || |||||||| || |||||||||    
T  4996666 aaatctattaatagaagttttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacatttttataaaaacttatttattttggatg 4996765  T
Q  183 attaa 187  Q
     ||||    
T  4996766 tttaa 4996770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 195
Target Start/End: Original strand, 1004771 - 1004892
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    |||||||||| |||||||||||||||||| |||||||||||||| | || |||| |||||| || | || |||||||||||||||||| |||||||  ||    
T  1004771 aatggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatattacttttgat-aaattatgattacacaactttttcataaaaactttttt 1004869  T
Q  173 gttttggatgattaagcattgcc 195  Q
    ||||| |||  |||| |||||||    
T  1004870 gttttagatccttaaccattgcc 1004892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 4186490 - 4186405
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaacttttt 157  Q
    |||| ||||||||||||||||||| ||||| | | |||||||||| | ||||||||||||||| |||||||||||||||| |||||    
T  4186490 caatagttaagaaatctacaaataaaaattttattttgaaaatataaaatgttacatttgatctagtaataattacacaatttttt 4186405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 38024190 - 38024290
Alignment:
Q  86 tctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgatt 185  Q
    |||||||||||||||| | |||| ||||||| |||| |||| ||||||||| ||||||||||| |||||||||||||||||   ||||||||||||| ||    
T  38024190 tctacaaatagaaattttatcttaaaaatataagatattac-tttgatcaaataataattacataactttttcattaaaacgggcttgttttggatgttt 38024288  T
Q  186 aa 187  Q
    ||    
T  38024289 aa 38024290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 221
Target Start/End: Complemental strand, 8580631 - 8580481
Alignment:
Q  71 gcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttac 170  Q
    |||||||||||  | |||| |||||||| |  ||||||| |||||| ||||||||| |||||| |||||||||||| |||  |||||||| |||||| ||    
T  8580631 gcaatggttaaagattctataaatagaattgttgtcttggaaatataagatgttacttttgattaagtaataattagacacatttttcatgaaaactaac 8580532  T
Q  171 ttgttttggatgattaagcattgcccttgaagcactggttaaccttctcca 221  Q
    ||  |||||||| |||| || |||||||   |||||||||| | |||||||    
T  8580531 ttactttggatgcttaaccaatgcccttagggcactggttagcattctcca 8580481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 1870462 - 1870593
Alignment:
Q  45 gggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataat 144  Q
    |||||||| ||||| |||||  || ||||||||||||| || ||| ||||||||| | |||||||||||||| || | | || |||||| ||||||||||    
T  1870462 gggtcttgctaaccagtgccctcagggcaatggttaaggaaactataaatagaaaatttgtcttgaaaatataagctttgacttttgattaagtaataat 1870561  T
Q  145 tacacaactttttcattaaaacttacttgtttt 177  Q
    ||||| | ||||| || |||| |||||||||||    
T  1870562 tacac-atttttttataaaaagttacttgtttt 1870593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 6315970 - 6315866
Alignment:
Q  107 ttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcact 206  Q
    |||||||||| ||||||||  |||||||||||||| ||||||||| ||||| |  |||| ||| |||||||||||| |||| || ||| |||| ||||||    
T  6315970 ttgaaaatataagatgttatttttgatcaagtaatgattacacaatttttttacaaaaatttatttgttttggatgtttaaccaatgctcttggagcact 6315871  T
Q  207 ggtta 211  Q
    |||||    
T  6315870 ggtta 6315866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 225
Target Start/End: Original strand, 3689585 - 3689765
Alignment:
Q  43 aagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaata 142  Q
    |||||||||||||| | |||||  |  | ||||||||||| | |||||||||||||||| | ||||  |||||| ||||||||| |||||||  |||||     
T  3689585 aagggtcttgttaatcagtgccctcgggacaatggttaaggattctacaaatagaaattttatctttgaaatataagatgttacttttgatc--gtaatg 3689682  T
Q  143 attacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcactggttaaccttctccataaa 225  Q
    |||||| |||||| |||| |||   | |||||||||| || |||| || ||||||||  |||||||||| | |||||| ||||    
T  3689683 attacataactttatcataaaattgtgcttgttttggctgcttaaccaatgcccttggggcactggttagcattctccttaaa 3689765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 18857552 - 18857437
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    ||||| |||||||| ||| ||||| ||| | |||||| ||||||||| ||||||  |||||| ||||||||||||||| |  ||||||| |||| |||||    
T  18857552 caatgattaagaaaactataaataaaaagtttgtcttaaaaatatgatatgttatctttgataaagtaataattacacgatattttcatgaaaatttact 18857453  T
Q  172 tgttttggatgattaa 187  Q
    ||||||| ||| ||||    
T  18857452 tgttttgaatgcttaa 18857437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 32909404 - 32909523
Alignment:
Q  76 ggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaac---tttttcattaaaacttactt 172  Q
    ||||||||||| |||||||| ||||| ||||||| |||||| |||| |||| |||||| ||||||| |||||| |||   ||||| || |||||||| ||    
T  32909404 ggttaagaaatatacaaatataaattttgtcttggaaatataagatattacttttgataaagtaattattacataacatttttttaataaaaacttattt 32909503  T
Q  173 gttttggatgattaagcatt 192  Q
     ||||||||| |||| ||||    
T  32909504 attttggatgcttaatcatt 32909523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 19889891 - 19889763
Alignment:
Q  45 gggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaa-attctgtcttgaaaatatgagatgttacatttgatcaagtaataa 143  Q
    |||| |||||||||| |||||||  |||| ||||||||||||||| ||||||||  || ||| ||| |||||| | |||| || ||| || |||||||||    
T  19889891 gggtattgttaaccgatgcctccggggcactggttaagaaatctataaatagaattttatgttttggaaatataatatgtcaccttttattaagtaataa 19889792  T
Q  144 ttacacaactttttcattaaaacttactt 172  Q
    |||||  ||||||| || |||||||||||    
T  19889791 ttacattactttttaatgaaaacttactt 19889763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 27896542 - 27896474
Alignment:
Q  111 aaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttgg 179  Q
    |||||| || |||||| ||||||  |||||||||||||||||||||| |||||||||||||| ||||||    
T  27896542 aaatataagctgttacttttgatttagtaataattacacaactttttaattaaaacttacttattttgg 27896474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 13835984 - 13835877
Alignment:
Q  42 aaagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaat 141  Q
    |||| ||||||||||||   |||  ||||| ||||||||||||| ||| ||||||||| |||||||||||||||| || | | || ||| || |||||||    
T  13835984 aaagagtcttgttaacccacgccctcaaggtaatggttaagaaaactataaatagaaaatctgtcttgaaaatataagttttgactttttattaagtaat 13835885  T
Q  142 aattacac 149  Q
    ||||||||    
T  13835884 aattacac 13835877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 3201134 - 3201232
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    |||||||||| ||||||||  ||||| || | |||||||||||||| || |||| |||||| || |||| ||||||||| ||||| || ||||||||||    
T  3201134 aatggttaaggaatctacatgtagaagttttatcttgaaaatatgaaatattacttttgattaactaatgattacacaattttttgataaaaacttact 3201232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 28331270 - 28331364
Alignment:
Q  93 atagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaa 187  Q
    |||||| || ||||||| |||||| | || |||  |||||||||||||| ||||||||||| |||||| ||||||||||| ||||| ||| ||||    
T  28331270 atagaagttttgtcttggaaatataaaatattatttttgatcaagtaatgattacacaactctttcataaaaacttacttattttgaatgcttaa 28331364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 42251654 - 42251597
Alignment:
Q  143 attacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttga 200  Q
    ||||||||||||||||||  |||||||||||||||||||| |||| || |||||||||    
T  42251654 attacacaactttttcatgtaaacttacttgttttggatgcttaaccaatgcccttga 42251597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 7932884 - 7932991
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    ||||||| ||||  |||||||||||||||||| ||| ||  |||| | |||| |||| || ||| ||||||| ||| |||||||||||| | ||||||||    
T  7932884 ggcaatgattaaagaatctacaaatagaaattttgttttagaaatgtaagattttactttggataaagtaatgattgcacaactttttcgtaaaaactta 7932983  T
Q  170 cttgtttt 177  Q
    ||| ||||    
T  7932984 cttatttt 7932991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 42551958 - 42552072
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    ||||||||||| |||||||||||| || || ||||||||| |||| | || |||  ||| ||||| |||  ||| |||| ||||||||| ||||||||||    
T  42551958 caatggttaaggaatctacaaataaaatttttgtcttgaagatat-aaatattattttttatcaaataacgattgcacatctttttcataaaaacttact 42552056  T
Q  172 tgttttggatgattaa 187  Q
    ||||||| ||| ||||    
T  42552057 tgttttgtatgtttaa 42552072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 43131810 - 43131861
Alignment:
Q  128 tttgatcaagtaataattacacaactttttcattaaaacttacttgttttgg 179  Q
    |||||||||||||||||||||| || |||| || ||||||||||||||||||    
T  43131810 tttgatcaagtaataattacactacctttttataaaaacttacttgttttgg 43131861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 36087488 - 36087407
Alignment:
Q  45 gggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttac 126  Q
    |||||||| ||||  |||||  || ||||||||||||| |||||||||||||||||| | ||||  |||||| |||||||||    
T  36087488 gggtcttgctaactagtgccctcagggcaatggttaaggaatctacaaatagaaattttatcttagaaatataagatgttac 36087407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 187
Target Start/End: Original strand, 43080296 - 43080415
Alignment:
Q  67 caaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaac 166  Q
    |||| ||||||||||| | || ||||||||||| | ||||||| ||| || ||||||||| ||||| | | | || ||||||||| |||||||| ||||     
T  43080296 caagccaatggttaaggattccacaaatagaaaatgtgtcttggaaacataagatgttacttttga-ctaattatgattacacaattttttcataaaaat 43080394  T
Q  167 ttacttgttttggatgattaa 187  Q
    ||  |||||||||||| ||||    
T  43080395 ttgattgttttggatgcttaa 43080415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 17641291 - 17641177
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    |||||||||| |||||| ||||| ||| | ||| ||  |||||| | ||||||| |||||| ||| ||| ||| ||||||||||  || |||||||||||    
T  17641291 aatggttaaggaatctataaataaaaactttgtttttgaaatataaaatgttacttttgataaagaaattattgcacaacttttcaatgaaaacttactt 17641192  T
Q  173 gttttggatgattaa 187  Q
     |||| |||| ||||    
T  17641191 attttagatgcttaa 17641177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 7669246 - 7669194
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgtta 125  Q
    |||||||||||||| || ||||| ||||| |||||| ||||||| ||||||||    
T  7669246 aatggttaagaaatttaaaaataaaaattttgtcttaaaaatataagatgtta 7669194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 44 - 213
Target Start/End: Original strand, 46295838 - 46296007
Alignment:
Q  44 agggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataa 143  Q
    ||||||||| ||||| || ||| |  ||||||||||||| |||||||||||| ||||| | |||||||||||| | ||||||| |||||||||||||| |    
T  46295838 agggtcttgctaaccagtaccttcggggcaatggttaaggaatctacaaataaaaattttatcttgaaaatataaaatgttacttttgatcaagtaatca 46295937  T
Q  144 ttacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcactggttaac 213  Q
    | ||||||||||||||| |||||||| |||||||||||| ||||  | | |||||||| || ||||||||    
T  46295938 tgacacaactttttcataaaaacttatttgttttggatgcttaacaaatacccttgaaacattggttaac 46296007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 13969094 - 13969245
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    |||| |||||| |||||||||||||||||| |||||||||||||| | ||||||| ||| || ||||||| ||||||||| |||||||| ||||||||||    
T  13969094 caatagttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttaattaagtaattattacacaattttttcataaaaacttact 13969193  T
Q  172 tgttttggatgattaagcattgcccttgaagcactggttaaccttctccata 223  Q
    |||||||| || |||| || | | ||||  |||||||||||| |||||||||    
T  13969194 tgttttggttgcttaaccaatactcttggggcactggttaacattctccata 13969245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 26829612 - 26829485
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    ||||||||||||||||| ||||| |||||||| ||||||| |||||| ||||||||| |||||| ||||||| |||||||||||||||||| |||| |||    
T  26829612 ggcaatggttaagaaatttacaattagaaattttgtcttggaaatataagatgttacttttgataaagtaatgattacacaactttttcatgaaaattta 26829513  T
Q  170 cttgttttggatgattaagcattgccct 197  Q
    ||| |||| |||| |||| |||||||||    
T  26829512 cttattttagatgcttaaccattgccct 26829485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 8001715 - 8001868
Alignment:
Q  45 gggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataat 144  Q
    |||| ||| ||||| |||||  || ||||||||||||| |||||| ||||||||||| | |||||||||||| ||||||||| |||||| ||||||| ||    
T  8001715 gggttttgctaaccagtgccctcagggcaatggttaaggaatctagaaatagaaattttatcttgaaaatataagatgttacttttgataaagtaatgat 8001814  T
Q  145 tacacaactttttcattaaaacttacttgttttggatgattaagcattgccctt 198  Q
    |||||||||||| ||| |||| ||||||||||| |||| |||| ||||| ||||    
T  8001815 tacacaacttttacatgaaaatttacttgttttagatgcttaaccattggcctt 8001868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 200
Target Start/End: Original strand, 33148126 - 33148254
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    ||||||||||| ||| ||||||| |||||| |||||| ||||||| ||||| ||| |||||||||||||| ||||||||| |||||||| ||||||||||    
T  33148126 caatggttaaggaatatacaaattgaaattttgtcttaaaaatataagatgctacttttgatcaagtaatgattacacaattttttcataaaaacttact 33148225  T
Q  172 tgttttggatgattaagcattgcccttga 200  Q
    ||||||| ||| ||||  | |||||||||    
T  33148226 tgttttgaatgtttaacaaatgcccttga 33148254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 177
Target Start/End: Original strand, 10226464 - 10226562
Alignment:
Q  79 taagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgtttt 177  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||||  |||||| ||||||| |||||||||||||||||| ||||||||| ||||||    
T  10226464 taaggaatctacaaatagaaattttgtcttgaaaatataagatgttaattttgataaagtaatgattacacaactttttcatgaaaacttacctgtttt 10226562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 44 - 177
Target Start/End: Complemental strand, 27688625 - 27688492
Alignment:
Q  44 agggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataa 143  Q
    ||||||||||||||| ||| |  ||||| ||| |||||| |||||||||||  ||||| | | |||||||||| ||||||||| |||||| ||||||| |    
T  27688625 agggtcttgttaaccagtgtcatcaaggaaattgttaaggaatctacaaattaaaattttatattgaaaatataagatgttacttttgataaagtaatga 27688526  T
Q  144 ttacacaactttttcattaaaacttacttgtttt 177  Q
    |||||||| |||||||| ||||||||||||||||    
T  27688525 ttacacaagtttttcatgaaaacttacttgtttt 27688492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 17169266 - 17169393
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    |||| ||||||||| |||||||| ||||  |||||||||||||| ||||||||  |||||| ||||||| |||| ||||||||||||| |||||||| ||    
T  17169266 aatgattaagaaatttacaaataaaaatattgtcttgaaaatataagatgttatttttgataaagtaattattatacaactttttcatgaaaacttattt 17169365  T
Q  173 gttttggatgattaagcattgcccttga 200  Q
    ||||| |||| |||| |||| |||||||    
T  17169366 gttttagatgcttaaccattacccttga 17169393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 177
Target Start/End: Complemental strand, 11449203 - 11449073
Alignment:
Q  47 gtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataatta 146  Q
    |||||||||| | |||||| || || |||||||||  |||||||||||| ||| | |||||| ||||||| | ||||||  |||||||| ||||||||||    
T  11449203 gtcttgttaatcagtgccttcacggaaatggttaaagaatctacaaataaaaaatttgtcttaaaaatataatatgttaattttgatcatgtaataatta 11449104  T
Q  147 cacaactttttcattaaaacttacttgtttt 177  Q
    || ||||||||||| ||||||||||| ||||    
T  11449103 cataactttttcataaaaacttacttatttt 11449073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 48282856 - 48282971
Alignment:
Q  42 aaagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaat 141  Q
    ||||||||||||||||||||||| ||  |||| |||||||| |||||| |||||||| ||||||||||||||||| |  ||| || ||| |||| |||||    
T  48282856 aaagggtcttgttaaccggtgcccccggggcactggttaaggaatctataaatagaatttctgtcttgaaaatataatctgtcactttttatcaggtaat 48282955  T
Q  142 aattacacaacttttt 157  Q
    |||||||  |||||||    
T  48282956 aattacattacttttt 48282971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 220
Target Start/End: Complemental strand, 32187165 - 32187024
Alignment:
Q  78 ttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgtttt 177  Q
    ||||| ||| || ||||||||||| |||||||||||||| ||||||||| ||||||||  |||||||| |||||| |||||| ||||| |||||||||||    
T  32187165 ttaaggaatttataaatagaaattttgtcttgaaaatataagatgttacttttgatcagataataattgcacaac-ttttcaataaaatttacttgtttt 32187067  T
Q  178 ggatgattaagcattgcccttgaagcactggttaaccttctcc 220  Q
    | ||  |||| || || |||||| |||| ||||| | ||||||    
T  32187066 gaattcttaaccaatgtccttgaggcaccggttatcattctcc 32187024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 123 - 213
Target Start/End: Original strand, 34347556 - 34347646
Alignment:
Q  123 ttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcactggttaac 213  Q
    |||| |||||| ||||||| |||||||||||||||||| || | |||||||||||||||| |||| |||||||||||  |||| |||||||    
T  34347556 ttacttttgataaagtaatgattacacaactttttcataaagatttacttgttttggatgcttaatcattgcccttggggcaccggttaac 34347646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 196
Target Start/End: Original strand, 30941466 - 30941588
Alignment:
Q  74 atggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttg 173  Q
    ||||||||| ||||| |||||| |  || ||||||| |||||| | ||||||  ||| |||||  ||||||||||||||||||||||  |||||||||||    
T  30941466 atggttaaggaatcttcaaatacattttttgtcttggaaatataacatgttattttttatcaaacaataattacacaactttttcatgtaaacttacttg 30941565  T
Q  174 ttttggatgattaagcattgccc 196  Q
    || |||||| |||| || |||||    
T  30941566 ttctggatgcttaaccaatgccc 30941588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 52429748 - 52429639
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtctt-gaaaatatgagatgttacatttgatcaagtaataattacacaact-ttttcattaaaact 167  Q
    ||||||| |||| ||||||| |||| |||||| |||||| |||||| | |||||||||  |||||| |||||| ||||||||||| ||||||||||| ||    
T  52429748 ggcaatgattaaaaaatctataaattgaaattttgtcttagaaaat-taagatgttactcttgatctagtaatgattacacaacttttttcattaaagct 52429650  T
Q  168 tacttgttttg 178  Q
    |||||||||||    
T  52429649 tacttgttttg 52429639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 40699368 - 40699263
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    ||||||||||| |||||||||||| |  || ||||||| ||| || |||| |||| ||||||| |||||||||||||||| ||||| || |||||||  |    
T  40699368 caatggttaaggaatctacaaatacattttttgtcttggaaacataagattttacttttgatcgagtaataattacacaatttttttatgaaaacttgtt 40699269  T
Q  172 tgtttt 177  Q
    ||||||    
T  40699268 tgtttt 40699263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 49731157 - 49731262
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    ||||||||||| |||| | || ||||| || ||||||||| || | ||||||||||||||| ||| ||||||||| || |||||||  | ||||||||||    
T  49731157 caatggttaaggaatccaaaagtagaagttttgtcttgaagatgtaagatgttacatttgaccaaataataattatactactttttattaaaaacttact 49731256  T
Q  172 tgtttt 177  Q
    ||||||    
T  49731257 tgtttt 49731262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 38597560 - 38597489
Alignment:
Q  110 aaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggat 181  Q
    ||||||| |||| | || |||||| ||||||| |||| |||||||||| |||||||||||||||||||||||    
T  38597560 aaaatataagatatcacttttgattaagtaatgattagacaacttttttattaaaacttacttgttttggat 38597489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 39238951 - 39238844
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    |||| |||||||| |||| | ||||| ||||| | |||| ||||| | || ||||||||||||||||||||| ||||||| | |||||  | ||||||||    
T  39238951 ggcattggttaaggaatccataaataaaaattttctcttaaaaatgtaagttgttacatttgatcaagtaatgattacactattttttattaaaaactta 39238852  T
Q  170 cttgtttt 177  Q
    ||||||||    
T  39238851 cttgtttt 39238844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 231
Target Start/End: Complemental strand, 8279832 - 8279695
Alignment:
Q  94 tagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaa-cttacttgttttggatgattaagcatt 192  Q
    ||||| || |||||||||||||| |||||||||||||||  || |||| |||| ||||| |||| ||||||| |||| ||||||| | ||||||| || |    
T  8279832 tagaagttttgtcttgaaaatataagatgttacatttgactaaataatgattatacaacgtttt-attaaaatcttaattgttttagttgattaaccaat 8279734  T
Q  193 gcccttgaagcactggttaaccttctccataaagaaatg 231  Q
    |||||||  ||||| |||| | |||||| |||| |||||    
T  8279733 gcccttggggcactagttagctttctccttaaaaaaatg 8279695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 39993496 - 39993446
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatg 122  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  39993496 caatggttaagaaatctacaaataaaaattttgtcttgaaaatataagatg 39993446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 50015771 - 50015896
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    |||| ||||| |||||  |||||| |||| |||||| |||||||  ||| |||| |||||||||| ||  |||| ||||||||||||| |||| ||| ||    
T  50015771 aatgattaaggaatctcaaaataggaattttgtcttaaaaatatatgatattacttttgatcaagcaacgattatacaactttttcataaaaatttattt 50015870  T
Q  173 gttttggatgattaagcattgccctt 198  Q
    |||||||||  |||| || |||||||    
T  50015871 gttttggatacttaaacaatgccctt 50015896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 30109337 - 30109229
Alignment:
Q  80 aagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattaca-caactttttcattaaaacttacttgttttg 178  Q
    ||||||||| |||||||||||| ||| |||||||||| | ||||||  ||| |||||  ||| ||||||  |  ||||| ||||||||||||||||||||    
T  30109337 aagaaatctccaaatagaaattttgttttgaaaatataatatgttattttttatcaaacaatgattacatgattttttttattaaaacttacttgttttg 30109238  T
Q  179 gatgattaa 187  Q
    |||| ||||    
T  30109237 gatgtttaa 30109229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 17644831 - 17644872
Alignment:
Q  155 tttcattaaaacttacttgttttggatgattaagcattgccc 196  Q
    |||||||||||||||||||||||||||| |||| ||||||||    
T  17644831 tttcattaaaacttacttgttttggatgcttaaccattgccc 17644872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 11065840 - 11065936
Alignment:
Q  50 ttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataatta 146  Q
    |||||||||||||||  |||||||||||||||| || ||| || || ||| | | |||||||||||| || | | || |||||| ||||||||||||    
T  11065840 ttgttaaccggtgccctcaaggcaatggttaaggaaactataattataaaatttctcttgaaaatataagttttgacttttgattaagtaataatta 11065936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 40391218 - 40391313
Alignment:
Q  78 ttaagaaatctacaaatagaaatt-ctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    |||||||||||| |||| ||| || ||||||||||||||| |  ||| || ||| |||||||||||||||||  ||||||| || |||||| ||||    
T  40391218 ttaagaaatctataaatcgaattttctgtcttgaaaatataaactgtcactttttatcaagtaataattacattactttttgataaaaactcactt 40391313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 48580011 - 48579929
Alignment:
Q  75 tggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaacttttt 157  Q
    ||||| || ||||||| |||||||||| ||||||  |||||| |||||| |  ||| ||||| |||| |||||||||||||||    
T  48580011 tggttgaggaatctactaatagaaattttgtcttagaaatataagatgtaatttttaatcaaataatgattacacaacttttt 48579929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 15398275 - 15398316
Alignment:
Q  103 tgtcttgaaaatatgagatgttacatttgatcaagtaataat 144  Q
    |||||||||||| | ||||||||||||||| |||||||||||    
T  15398275 tgtcttgaaaatgtaagatgttacatttgaccaagtaataat 15398316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 27160276 - 27160332
Alignment:
Q  43 aagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaa 99  Q
    |||||| ||| |||||||||||  |||||||||||||||| |||||| || ||||||    
T  27160276 aagggttttgctaaccggtgccctcaaggcaatggttaagcaatctataattagaaa 27160332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 38169138 - 38169094
Alignment:
Q  105 tcttgaaaatatgagatgttacatttgatcaagtaataattacac 149  Q
    |||||||||||| || ||||||| ||||||||||||| |||||||    
T  38169138 tcttgaaaatataagttgttacacttgatcaagtaatgattacac 38169094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 50127362 - 50127450
Alignment:
Q  91 aaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttgg 179  Q
    |||||||| |||||||||| |||||| |  ||| |  ||| ||| |||||||||||||  ||||||| || ||||||||||| ||||||    
T  50127362 aaatagaatttctgtcttggaaatataaactgtcattttttatcgagtaataattacattactttttaataaaaacttacttcttttgg 50127450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 12095104 - 12094955
Alignment:
Q  44 agggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataa 143  Q
    ||||||||| ||||| |||||  |  |||||| |||||| |||||||||||||||||| ||  |||||||||| |||| |||| |||||| ||||||| |    
T  12095104 agggtcttgctaaccagtgccctcggggcaatagttaaggaatctacaaatagaaattttgcattgaaaatataagatattacttttgataaagtaatga 12095005  T
Q  144 ttacacaactttttcattaaaacttacttgttttggatgattaagcattg 193  Q
    ||||||||||||||||| ||||||||||| ||||||||| |||| |||||    
T  12095004 ttacacaactttttcataaaaacttacttattttggatgtttaaacattg 12094955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 27284192 - 27284040
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    ||||||||||||| |||||||| ||||||||| ||||||| |||||| ||||||||| ||||||||| |||| ||| ||||||||||| || ||||||||    
T  27284192 ggcaatggttaaggaatctacatatagaaattttgtcttggaaatataagatgttacttttgatcaaataatgattgcacaacttttttataaaaactta 27284093  T
Q  170 cttgttttggatgattaagcattgcccttgaagcactggttaaccttctccat 222  Q
     || ||||||||| |||| || ||||||||  | ||| |||||| ||||||||    
T  27284092 tttattttggatgtttaaccaatgcccttggggtactcgttaacattctccat 27284040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 197
Target Start/End: Original strand, 2824814 - 2824936
Alignment:
Q  75 tggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgt 174  Q
    |||||||| | ||||||||||| | || |||||||  ||||| ||||||||| |||||||||||||| |||||||||| ||||||| ||||||| |||||    
T  2824814 tggttaaggattctacaaatagcacttttgtcttgggaatataagatgttacttttgatcaagtaatgattacacaacattttcataaaaacttgcttgt 2824913  T
Q  175 tttggatgattaagcattgccct 197  Q
    ||| |||| |||| || ||||||    
T  2824914 tttagatgcttaatcaatgccct 2824936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 31991448 - 31991602
Alignment:
Q  67 caaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaac 166  Q
    |||||||||||||||| |||| |||| || ||||| ||  |||||||||| ||||||||  |||||| ||||||||||||||| | |||||||| ||||     
T  31991448 caaggcaatggttaaggaatccacaattaaaaattttgctttgaaaatataagatgttatttttgataaagtaataattacacgattttttcatgaaaat 31991547  T
Q  167 ttacttgttttggatgattaagcattgcccttgaagcactggttaaccttctcca 221  Q
    |||||| ||||  ||| |||| ||||||| ||||| || |||||| | |||||||    
T  31991548 ttacttattttatatgtttaaccattgcctttgaaacattggttagcgttctcca 31991602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 187
Target Start/End: Original strand, 12076418 - 12076538
Alignment:
Q  67 caaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaac 166  Q
    ||||| |||||||||| ||||| |||||| ||||| |||||||||||||| ||||||||  |||||||||| ||| || |||||| ||||| || | |||    
T  12076418 caaggtaatggttaaggaatcttcaaataaaaattttgtcttgaaaatataagatgttaattttgatcaagcaatgatcacacaattttttgatgagaac 12076517  T
Q  167 ttacttgttttggatgattaa 187  Q
    ||||||||||| |||| ||||    
T  12076518 ttacttgttttagatgtttaa 12076538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 48419193 - 48419041
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    |||| |||||||| |||||||||||||||||| ||| ||| |||| | | |  |||| |||||| ||||||| ||| |||||||||||||| ||||||||    
T  48419193 ggcagtggttaaggaatctacaaatagaaattttgttttggaaatgtaaaactttacttttgataaagtaatgattgcacaactttttcatgaaaactta 48419094  T
Q  170 cttgttttggatgattaagcattgcccttgaagcactggttaaccttctccat 222  Q
    ||||||||  ||| ||||  ||||||||| | ||||| |||| | ||||||||    
T  48419093 cttgttttatatgcttaactattgcccttaaggcactagttagcattctccat 48419041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 70 - 192
Target Start/End: Complemental strand, 13967965 - 13967842
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcat-taaaactt 168  Q
    |||||| |||||| |||||||||||||||||| |||||||  ||||| ||||||||  ||| |||||||||| |||| |||||||||||||  |||| ||    
T  13967965 ggcaatagttaaggaatctacaaatagaaattttgtcttggtaatataagatgttattttttatcaagtaatgattatacaactttttcataaaaaaatt 13967866  T
Q  169 acttgttttggatgattaagcatt 192  Q
    || ||||||||||| |||| ||||    
T  13967865 acatgttttggatgtttaaccatt 13967842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 28740384 - 28740277
Alignment:
Q  91 aaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagca 190  Q
    ||||| ||||| | |||||||||||| ||||| ||  |||||| ||||||| ||||| || |||||||||||||||||| ||||||| ||||||||| ||    
T  28740384 aaatataaattttatcttgaaaatataagatgatatttttgataaagtaatgattacgcatctttttcattaaaacttatttgttttagatgattaatca 28740285  T
Q  191 ttgccctt 198  Q
    ||||||||    
T  28740284 ttgccctt 28740277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 225
Target Start/End: Complemental strand, 20775194 - 20775037
Alignment:
Q  68 aaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaact 167  Q
    |||| |||||||||  |||||| ||||| ||| | ||||||  |||||| |||| |||  ||||||||| |||| |||||| ||||||||||| ||||||    
T  20775194 aaggtaatggttaatgaatctataaataaaaaatttgtcttagaaatataagatattatttttgatcaaataattattacataactttttcataaaaact 20775095  T
Q  168 tacttgttttggatgattaagcattgcccttgaagcactggttaaccttctccataaa 225  Q
    ||||||||||||||| |||| || || | ||| ||||||  ||| | |||||||||||    
T  20775094 tacttgttttggatgcttaaccaatgtctttggagcactatttagcattctccataaa 20775037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 31089778 - 31089878
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    ||||||| ||||| ||||||| |||||||||| ||||| | |||||| | ||||||| |||||| ||||||| |||||||||||||||||| ||||||||    
T  31089778 ggcaatgattaaggaatctaccaatagaaattttgtctaggaaatataa-atgttacttttgataaagtaatgattacacaactttttcataaaaactta 31089876  T
Q  170 ct 171  Q
    ||    
T  31089877 ct 31089878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 19480618 - 19480550
Alignment:
Q  109 gaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgtttt 177  Q
    |||||||| ||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||    
T  19480618 gaaaatataagatgttacttttgataaagtaatgattacacaactttttcataaaaacttacttgtttt 19480550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 39810731 - 39810850
Alignment:
Q  105 tcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaagca 204  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| ||| |||| ||||| || |||||||||||| |||| || | ||||||  |||    
T  39810731 tcttgaaaatataagatgttacttttgatcaagtaataattacacaa-tttatcatgaaaacatatttgttttggatgtttaaccaatacccttggggca 39810829  T
Q  205 ctggttaaccttctccataaa 225  Q
     | |||| | |||||||||||    
T  39810830 atagttagcattctccataaa 39810850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 220
Target Start/End: Complemental strand, 28176892 - 28176746
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    |||||||||||||| |||||||||||||| | ||||  |||||| |||| |||  |||||| || |||| |||||||| |||||||||||||||||  ||    
T  28176892 aatggttaagaaatttacaaatagaaattttatcttagaaatataagatattat-tttgataaaataatgattacacatctttttcattaaaacttcatt 28176794  T
Q  173 gttttggatgattaagcattgcccttgaagcactggttaaccttctcc 220  Q
    ||||| |||| ||||  ||  ||||||  |||||||||||| ||||||    
T  28176793 gttttagatgcttaactatgacccttgtggcactggttaacattctcc 28176746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 44190321 - 44190235
Alignment:
Q  88 tacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttt 176  Q
    |||||||| ||||| | |||||||||||| ||||||||| ||||||||||||||||||||| ||||| |||   |||||||||||||||    
T  44190321 tacaaatataaattttatcttgaaaatataagatgttacttttgatcaagtaataattacataacttattc--gaaaacttacttgttt 44190235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 198
Target Start/End: Original strand, 52837233 - 52837388
Alignment:
Q  46 ggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttaca---tttgatcaagtaata 142  Q
    ||||||| ||| ||||| || || | ||||||||||| ||| || ||||||||||| | ||||| | |||| | |||||||    |||||||| |||||     
T  52837233 ggtcttgctaatcggtgtcttcaggacaatggttaaggaatttataaatagaaattttatcttggacatataaaatgttactacttttgatcacgtaatt 52837332  T
Q  143 attacacaactttttcattaaaacttacttgttttggatgattaagcattgccctt 198  Q
    |||||||||||||||||| |||| || ||||||||||||| |||| || |||||||    
T  52837333 attacacaactttttcataaaaattttcttgttttggatgcttaaccaatgccctt 52837388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 2565418 - 2565510
Alignment:
Q  84 aatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttt 176  Q
    |||||| ||||| ||||| | ||||||||| || | ||||||| |||||||||||||| ||||||||||||||  || |||||||||||||||    
T  2565418 aatctataaatataaattttatcttgaaaacataaaatgttacttttgatcaagtaatgattacacaacttttctataaaaacttacttgttt 2565510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 178
Target Start/End: Complemental strand, 22019718 - 22019615
Alignment:
Q  75 tggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgt 174  Q
    |||||||| |||||| ||||  ||||| |||||| ||||||| ||||||||  ||  || ||||||| |||||||||||||||| | |||||||||||||    
T  22019718 tggttaaggaatctataaatgaaaattttgtctttaaaatataagatgttattttctattaagtaatgattacacaactttttcttgaaaacttacttgt 22019619  T
Q  175 tttg 178  Q
    ||||    
T  22019618 tttg 22019615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 55 - 177
Target Start/End: Original strand, 22611875 - 22611998
Alignment:
Q  55 aaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaa-ct 153  Q
    ||||||||||| || |  |||| |||||||||||||||||| ||||| |||||| ||||||| ||||||||| || ||| ||||||| ||||| |||  |    
T  22611875 aaccggtgccttcaggataatgattaagaaatctacaaatataaattttgtcttaaaaatataagatgttactttcgataaagtaatgattactcaattt 22611974  T
Q  154 ttttcattaaaacttacttgtttt 177  Q
    |||| ||| |||||||||| ||||    
T  22611975 tttttatttaaacttacttatttt 22611998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 7437806 - 7437920
Alignment:
Q  54 taaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaact 153  Q
    |||| ||||||  |||||||||||||||  | || ||||||| ||| | ||||||| |||||| ||||||||| ||||| ||||| || |||||||||||    
T  7437806 taactggtgccctcaaggcaatggttaacgattccacaaataaaaaatgtgtcttggaaatataagatgttacttttgaacaagtcatgattacacaact 7437905  T
Q  154 ttttcattaaaactt 168  Q
    ||||| | |||||||    
T  7437906 ttttcgtaaaaactt 7437920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 27133697 - 27133552
Alignment:
Q  42 aaagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaat 141  Q
    ||||||||||| ||||| || ||  || | ||||||||||| ||||  |||||||||| | ||||||  |||||| |||| |||  |||| |||||||||    
T  27133697 aaagggtcttgctaaccagtaccctcaggacaatggttaaggaatcaccaaatagaaagtttgtctttgaaatataagatattatttttgttcaagtaat 27133598  T
Q  142 aattacacaactttttcattaaaacttacttgttttggatgattaa 187  Q
     |||| ||||||||||||| ||||||||| | |||| |||| ||||    
T  27133597 gattatacaactttttcataaaaacttacctattttagatgcttaa 27133552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 19147146 - 19147250
Alignment:
Q  75 tggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgt 174  Q
    ||||||||||||||| || ||||| ||||||||||||||||| |  ||| || ||| ||||| |||||||||||  |||| || || ||||||||||| |    
T  19147146 tggttaagaaatctataagtagaatttctgtcttgaaaatataaactgtcactttttatcaaataataattacattacttattaataaaaacttacttct 19147245  T
Q  175 tttgg 179  Q
    |||||    
T  19147246 tttgg 19147250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 51100016 - 51100128
Alignment:
Q  67 caaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcat-taaaa 165  Q
    |||||||||||||||| |||||| ||||||||| | | | |||||||||| || | | || |||||| ||||||||||||||| ||||||| ||  ||||    
T  51100016 caaggcaatggttaaggaatctataaatagaaaatttattttgaaaatataagttttaacttttgattaagtaataattacactactttttaataaaaaa 51100115  T
Q  166 cttacttgttttg 178  Q
     ||||||||||||    
T  51100116 gttacttgttttg 51100128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 16341097 - 16341212
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    ||||||||||| ||| |||||||| || || ||||||  |||||| | ||||||| |||||| ||||||| |||||| || |||||||| |||| ||| |    
T  16341097 caatggttaaggaatttacaaataaaatttttgtctttgaaatataaaatgttacttttgattaagtaatgattacataattttttcataaaaatttatt 16341196  T
Q  172 tgttttggatgattaa 187  Q
    | ||||||||| ||||    
T  16341197 tattttggatgtttaa 16341212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 41142262 - 41142413
Alignment:
Q  45 gggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataat 144  Q
    |||||||||||||| ||||| ||  |||| |||||||| |||  |  |||| ||||| ||||||||||| || || | |||| |||||| || |||||||    
T  41142262 gggtcttgttaaccagtgcccccggggcattggttaaggaattcatgaataaaaattttgtcttgaaaaaataaggtcttacttttgattaaataataat 41142361  T
Q  145 tacacaactttttcattaaaacttacttgttttggatgattaagcattgccc 196  Q
    ||||  |||||||  | |||| |||||||||||| ||| |||| ||||||||    
T  41142362 tacattacttttttgtgaaaatttacttgttttgaatgcttaaccattgccc 41142413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 45921335 - 45921418
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttt 156  Q
    |||||||||| |||||| ||||||||| | |||||||||||||| || | | ||  ||||| ||||||||||||||||||||||    
T  45921335 aatggttaaggaatctataaatagaaaatttgtcttgaaaatataagttttgactattgattaagtaataattacacaactttt 45921418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 36506747 - 36506816
Alignment:
Q  154 ttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcactggttaaccttctccata 223  Q
    ||||||| |||| |||||||||||||||| ||||||| |||||||| |||| |||||| | |||||||||    
T  36506747 ttttcatgaaaatttacttgttttggatgcttaagcaatgcccttggagcattggttagcattctccata 36506816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 30694382 - 30694297
Alignment:
Q  91 aaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttgg 179  Q
    ||||||||||| |||||||||||||| || ||||   ||||||||||||||||||| ||  || |||  | ||||||||||||||||||    
T  30694382 aaatagaaattttgtcttgaaaatataagttgtt---tttgatcaagtaataattatacctctgttttgtgaaaacttacttgttttgg 30694297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 31861429 - 31861511
Alignment:
Q  78 ttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcat 160  Q
    ||||| ||| |||| ||| ||||| | | ||| |||||| ||||||||| |||||||||||||| ||||||||| ||||||||    
T  31861429 ttaaggaatttacatataaaaattttattttggaaatataagatgttacttttgatcaagtaatgattacacaaatttttcat 31861511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 44639951 - 44639887
Alignment:
Q  107 ttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    |||| ||||| ||||||||| |||||| ||||||| ||||||||||||||| || ||||| ||||    
T  44639951 ttgagaatataagatgttacttttgattaagtaatgattacacaactttttgatgaaaacatact 44639887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 37431793 - 37431876
Alignment:
Q  88 tacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    |||||||| ||||| | |||| ||| ||| ||||||||| ||| || ||||||||||| ||||||||||  || ||||||||||    
T  37431793 tacaaataaaaattttatcttaaaattataagatgttacttttaattaagtaataattgcacaacttttcaataaaaacttact 37431876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 55090900 - 55090794
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    |||| |||||||| || ||| ||||  ||| | |||||||||||||| || | | || |||||| |||| |||||||||||||||||| || |||| |||    
T  55090900 ggcattggttaaggaaactataaatgaaaaatttgtcttgaaaatataagttttgacttttgattaagttataattacacaacttttt-ataaaaagtta 55090802  T
Q  170 cttgtttt 177  Q
    ||||||||    
T  55090801 cttgtttt 55090794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 55126785 - 55126896
Alignment:
Q  84 aatctacaaatagaaattctgtcttgaaaatatgagatgttacattt-gatcaagtaataattacacaactttttcattaaaacttacttgttttggatg 182  Q
    |||||||||||| |  || ||| |||||||||| | ||||||| ||| ||| || |||| |||||||||||||||||| |||||||| || |||| |||     
T  55126785 aatctacaaataaattttttgttttgaaaatataaaatgttactttttgataaaataatgattacacaactttttcataaaaacttatttattttagata 55126884  T
Q  183 attaagcattgc 194  Q
     |||| ||||||    
T  55126885 cttaaccattgc 55126896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 2908178 - 2908250
Alignment:
Q  44 agggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatat 116  Q
    ||||||||  ||||||||| |  || ||||||||||||| || ||| ||||||||| | ||||||||||||||    
T  2908178 agggtcttactaaccggtgtcctcacggcaatggttaaggaaactataaatagaaaatttgtcttgaaaatat 2908250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 3708754 - 3708722
Alignment:
Q  128 tttgatcaagtaataattacacaactttttcat 160  Q
    |||||||||||||| ||||||||||||||||||    
T  3708754 tttgatcaagtaatgattacacaactttttcat 3708722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 36752696 - 36752752
Alignment:
Q  121 tgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgtttt 177  Q
    |||| ||||||| |||||||||||||||||| |||||  | |||| |||||||||||    
T  36752696 tgttccatttgaccaagtaataattacacaattttttattaaaaatttacttgtttt 36752752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 42 - 220
Target Start/End: Complemental strand, 22294131 - 22293954
Alignment:
Q  42 aaagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaat 141  Q
    ||||||||||| ||| | |||||||  || ||||||||||| |||||||||||||||||| ||||||| |||||| |||| ||   ||||||||| ||||    
T  22294131 aaagggtcttgctaaacagtgcctcagag-caatggttaaggaatctacaaatagaaattttgtcttggaaatataagatattggttttgatcaaataat 22294033  T
Q  142 aattacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcactggttaaccttctcc 220  Q
     ||| |||||||||||||| ||||||||||||||||| ||| |||| || | ||||||  |||||||||| | ||||||    
T  22294032 tattgcacaactttttcataaaaacttacttgttttgaatgtttaaccaatacccttgtggcactggttagcattctcc 22293954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 11816029 - 11815903
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    ||||||||||  |||||| ||||||||||| |||||||||||||| ||||||||| |||||| ||||||| ||||||||  |||||||| ||||||||||    
T  11816029 caatggttaatgaatctaaaaatagaaattttgtcttgaaaatataagatgttacttttgataaagtaatgattacacatatttttcataaaaacttact 11815930  T
Q  172 tgttttggatgattaagcattgccctt 198  Q
    ||||||  ||  |||| ||||||||||    
T  11815929 tgttttaaatatttaatcattgccctt 11815903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 200
Target Start/End: Complemental strand, 27544709 - 27544579
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    |||||||  |||| |||||||||||||||||| | |||||||||||| ||||||||  ||| |||| ||||| |||||||||||||||||| |||| |||    
T  27544709 ggcaatgactaaggaatctacaaatagaaattttatcttgaaaatataagatgttattttttatcatgtaatgattacacaactttttcatgaaaattta 27544610  T
Q  170 cttgttttggatgattaagcattgcccttga 200  Q
    ||||||||||||| ||||  | |||||||||    
T  27544609 cttgttttggatgtttaactaatgcccttga 27544579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 187
Target Start/End: Original strand, 30840596 - 30840707
Alignment:
Q  75 tggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgt 174  Q
    |||||||| ||||||| || ||||| | |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||  | |||||||||||||    
T  30840596 tggttaaggaatctactaacagaaaatttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacttttt-ttgaaaacttacttgt 30840694  T
Q  175 tttggatgattaa 187  Q
    |||||||| ||||    
T  30840695 tttggatgcttaa 30840707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 75 - 197
Target Start/End: Original strand, 30293821 - 30293943
Alignment:
Q  75 tggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgt 174  Q
    |||||||  |||||||||||||||||| |||||| ||||||| ||||||||| |||||||||||||| |||||| || |||||||| |||||||  ||||    
T  30293821 tggttaaagaatctacaaatagaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattacataattttttcatgaaaacttgtttgt 30293920  T
Q  175 tttggatgattaagcattgccct 197  Q
    |||| ||| |||| || ||||||    
T  30293921 tttgaatggttaaccagtgccct 30293943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 36482168 - 36482072
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    |||||||||  |||||||||||||||||| ||| |||||||||| ||||||||| ||||||||| ||||  |||||||||||||| || ||||||||    
T  36482168 aatggttaatgaatctacaaatagaaattttgttttgaaaatataagatgttacttttgatcaaataatgtttacacaacttttttatgaaaactta 36482072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 179
Target Start/End: Complemental strand, 14863483 - 14863347
Alignment:
Q  43 aagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaata 142  Q
    |||||||||||||||| |||||| |  | || |||||||  |||||| ||||| || || |||||||||||||| |  ||| || ||| |||||||||||    
T  14863483 aagggtcttgttaaccagtgccttcgggacactggttaaagaatctataaatataatttatgtcttgaaaatataaactgtcactttttatcaagtaata 14863384  T
Q  143 attacacaactttttcattaaaacttacttgttttgg 179  Q
    ||||||  | ||||| || ||||||||||| ||||||    
T  14863383 attacattaatttttaataaaaacttactttttttgg 14863347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 14044677 - 14044772
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    |||| |||||| |||||||||||| || || | |||||||| ||| |||| |||| |||||||||||||| ||||||||||||||| || ||||||||    
T  14044677 caattgttaaggaatctacaaata-aatttttttcttgaaa-tataagatattacttttgatcaagtaattattacacaacttttttataaaaactta 14044772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 18242552 - 18242479
Alignment:
Q  77 gttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacaca 150  Q
    |||||| ||||||||| |||||||| |||||||||||||| |||||  || ||||||| |||||| ||||||||    
T  18242552 gttaaggaatctacaagtagaaattttgtcttgaaaatataagatgcgacttttgatctagtaatgattacaca 18242479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 8151765 - 8151940
Alignment:
Q  47 gtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaag--taataat 144  Q
    |||||||||||| ||||   || ||| ||||||||| ||| || || |||||||| ||| |||||||||| ||||||||| ||| ||||||  |||||||    
T  8151765 gtcttgttaaccagtgctctcagggccatggttaaggaatttataagtagaaattttgttttgaaaatataagatgttacttttaatcaagtataataat 8151864  T
Q  145 tacacaactttttcat-taaaacttacttgttttggatgattaagcattgcccttgaagcactggttaaccttctc 219  Q
    || | |||||||| ||  |||| |||||| ||||| ||  |||| || | ||||| | |||||||||||| |||||    
T  8151865 tatataacttttttatgaaaaatttacttattttgtatatttaatcaatacccttaaggcactggttaacattctc 8151940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 41645147 - 41645034
Alignment:
Q  75 tggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgt 174  Q
    |||||||  |||||| ||||| ||||| ||||| |||||||| |||| |||  ||| |||||||||| ||||||||||  |||||| |||| |||||| |    
T  41645147 tggttaaagaatctataaataaaaattttgtctagaaaatataagatattattttttatcaagtaatgattacacaac--tttcatgaaaatttacttat 41645050  T
Q  175 tttggatgattaagca 190  Q
    ||| |||| |||||||    
T  41645049 tttagatgcttaagca 41645034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 1447548 - 1447654
Alignment:
Q  71 gcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcatt-aaaactta 169  Q
    |||||| |||||||||| | || |||||||| | | ||| |||||| || ||||||| |||| |||||||||||||||| || |||||||| ||||||||    
T  1447548 gcaatgattaagaaatccataagtagaaattttattttggaaatataagctgttacagttgaccaagtaataattacactac-ttttcattaaaaactta 1447646  T
Q  170 cttgtttt 177  Q
    ||| ||||    
T  1447647 cttatttt 1447654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 2611141 - 2611244
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattc-tgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactt 168  Q
    |||| |||||||| |||||| |||||||||||  ||||||| |||||| || ||| || ||| || ||||||||||||||  ||||||| || |||||||    
T  2611141 ggcactggttaaggaatctataaatagaaatttatgtcttggaaatataagctgtcactttttattaagtaataattacattactttttaataaaaactt 2611240  T
Q  169 actt 172  Q
    ||||    
T  2611241 actt 2611244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 6102948 - 6102870
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattaca 148  Q
    ||||||||||||| |||||| ||||||||| | |||||| ||||||| || | | || |||||| ||||||||||||||    
T  6102948 ggcaatggttaaggaatctataaatagaaaatttgtcttcaaaatataagttttgacttttgattaagtaataattaca 6102870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 6646367 - 6646286
Alignment:
Q  111 aaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagcatt 192  Q
    |||||| | ||||||| |||||| | ||||| ||||||||| ||||||||||| | ||||||||||| |||| |||| ||||    
T  6646367 aaatataatatgttacttttgataatgtaatgattacacaattttttcattaatatttacttgttttagatgtttaaacatt 6646286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 7609595 - 7609682
Alignment:
Q  132 atcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcactggttaaccttctcc 220  Q
    |||||||||||||||||  ||||||| || ||||||||||| |||||| || |||| || |||||  | ||||||||||||| ||||||    
T  7609595 atcaagtaataattacattactttttaataaaaacttacttcttttgg-tgcttaaccaatgccccgggagcactggttaacattctcc 7609682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 220
Target Start/End: Complemental strand, 8435210 - 8435027
Alignment:
Q  37 taaagaaagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaa 136  Q
    |||| ||||||||||||||||| ||||| ||   ||| || |||||||||||| || | ||||   ||||||| |||||| |  ||| || ||||| |||    
T  8435210 taaacaaagggtcttgttaacccgtgcccccggtgcactgattaagaaatctaaaagtggaaaaattgtcttggaaatataaagtgtaacttttgaccaa 8435111  T
Q  137 gtaataattacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcactggttaaccttctcc 220  Q
     ||||||||| || | ||||| || ||| ||||||| ||||||||| |||| || ||||   |  |||||||||||| ||||||    
T  8435110 ctaataattataccattttttaataaaatcttacttattttggatgcttaaccaatgcctcaggggcactggttaacattctcc 8435027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 1056888 - 1056818
Alignment:
Q  111 aaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggat 181  Q
    |||||| | ||||||| ||| ||||| |||| |||||| || |||||||| |||||||| |||||||||||    
T  1056888 aaatataatatgttacttttaatcaaataatgattacataattttttcataaaaacttatttgttttggat 1056818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 12036273 - 12036379
Alignment:
Q  42 aaagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaat 141  Q
    ||||||||||| ||||| || ||  || || ||| |||||| || ||| ||||||||| | |||||||||||||| || | | || |||||| |||||||    
T  12036273 aaagggtcttgctaaccagtaccctcagggaaatagttaaggaacctataaatagaaaatttgtcttgaaaatataagttttgacttttgattaagtaat 12036372  T
Q  142 aattaca 148  Q
    |||||||    
T  12036373 aattaca 12036379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 34347001 - 34346951
Alignment:
Q  71 gcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagat 121  Q
    |||||||||||| |||||||||||| ||| | |||||||||||||| ||||    
T  34347001 gcaatggttaaggaatctacaaataaaaaatttgtcttgaaaatataagat 34346951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 7319316 - 7319228
Alignment:
Q  132 atcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagcattgcccttgaagcactggttaaccttctcc 220  Q
    |||||||||| ||||||||||||||| ||  || ||||||  ||||||||| |||| || ||||| ||  |||||| ||||| ||||||    
T  7319316 atcaagtaattattacacaactttttaatagaatcttactctttttggatgcttaaccaatgcccatggggcactgtttaacattctcc 7319228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 27365985 - 27366093
Alignment:
Q  91 aaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagca 190  Q
    |||| |||||| | ||||| |||||| |||| |||| || || ||| |||| ||||| ||| |||||||| ||||| |  |||||||||||| |||| ||    
T  27365985 aaattgaaattttatcttggaaatataagatattactttagaccaaataatgattacgcaattttttcatgaaaacatgtttgttttggatgcttaacca 27366084  T
Q  191 ttgcccttg 199  Q
     ||||||||    
T  27366085 atgcccttg 27366093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 120788 - 120646
Alignment:
Q  71 gcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttac 170  Q
    |||||||||||| |||||||||||||||||| |||||||||||||| |||||| || |||| | ||||||  ||| |||||||||| ||  |||||||||    
T  120788 gcaatggttaaggaatctacaaatagaaattttgtcttgaaaatataagatgtcacttttggtaaagtaacgattgcacaacttttccacaaaaacttac 120689  T
Q  171 ttgttttggatgattaagcattgcccttgaagcactggttaac 213  Q
    || ||||||||| |||| ||||  ||||  | |||||||||||    
T  120688 ttattttggatgtttaaccattatccttagaacactggttaac 120646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 5611129 - 5611239
Alignment:
Q  77 gttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttt 176  Q
    |||||| |||||| ||||||||||| ||||||  |||||| ||||||||| ||| ||||| ||||||||| ||||||| ||||| |||||||||||||||    
T  5611129 gttaaggaatctataaatagaaattttgtcttagaaatataagatgttacttttaatcaaataataattatacaacttattcataaaaacttacttgttt 5611228  T
Q  177 tggatgattaa 187  Q
    |||||| ||||    
T  5611229 tggatgtttaa 5611239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 32134164 - 32134038
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    |||| |||||| |||||||||||||||||| ||| |||| ||||| ||||||||  ||| |||||||||| |||||||||||||||||  ||||||||||    
T  32134164 caatagttaaggaatctacaaatagaaattttgttttgagaatataagatgttattttttatcaagtaatgattacacaactttttcaagaaaacttact 32134065  T
Q  172 tgttttggatgattaagcattgccctt 198  Q
    | |||| |||| |||| || |||||||    
T  32134064 tattttagatgcttaaccaatgccctt 32134038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 227455 - 227303
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgat-caagtaataattacacaa-ctttttcattaaaact 167  Q
    ||||||||||||| |||||| ||||||||||| | | |||||||||| ||||||||| ||||||  ||  ||| |||||||||  |||||||| ||| ||    
T  227455 ggcaatggttaaggaatctataaatagaaatttttttttgaaaatataagatgttacttttgataaaaacaatgattacacaatttttttcataaaatct 227356  T
Q  168 tacttgttttggatgattaagcattgcccttgaagcactggttaaccttctcc 220  Q
    ||||| ||||||||| |||| |||| ||||||| |||||| ||||| ||||||    
T  227355 tacttcttttggatgcttaaccatttcccttgaggcactgattaacattctcc 227303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 19659610 - 19659724
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    ||||||| ||| |||||||||| | ||||| ||| ||||||||||||||| ||| |||||||||| |||| ||||||||||||||| || ||||||||||    
T  19659610 caatggtcaaggaatctacaaaaataaattttgt-ttgaaaatatgagatattatatttgatcaactaatgattacacaacttttttataaaaacttact 19659708  T
Q  172 tgttttggatgattaa 187  Q
    | |||| |||| ||||    
T  19659709 tattttagatgtttaa 19659724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 220
Target Start/End: Complemental strand, 31223330 - 31223165
Alignment:
Q  44 agggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataa 143  Q
    ||||||||| ||| ||||||| |||||||| |||||||  |||||||||||| ||||| ||||||| |||||| ||||             ||||||| |    
T  31223330 agggtcttgctaatcggtgccaccaaggcattggttaatgaatctacaaataaaaattttgtcttggaaatataagatt------------aagtaatga 31223243  T
Q  144 ttacacaacttttt-cattaaaacttacttgttttggatgattaagcattgcccttgaagcactggttaaccttctcc 220  Q
    |||||||||||||| ||| ||||||||||||||||||||| |||| || |||||||| ||||| ||||| | ||||||    
T  31223242 ttacacaacttttttcatgaaaacttacttgttttggatgtttaaccaatgcccttggagcaccggttagcattctcc 31223165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 33121279 - 33121411
Alignment:
Q  45 gggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataat 144  Q
    |||| ||||||||| ||||||  || | |||||||||||||| | |||||| || || |||||||||||||| ||||||||  ||| |||||  ||| ||    
T  33121279 gggttttgttaaccagtgcctttaaagtaatggttaagaaattttcaaataaaatttttgtcttgaaaatataagatgttattttttatcaaacaatgat 33121378  T
Q  145 tacacaactttttcattaaaacttacttgtttt 177  Q
    |||||||||||||||| |||| |||||| ||||    
T  33121379 tacacaactttttcatgaaaatttacttatttt 33121411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 2911458 - 2911567
Alignment:
Q  68 aaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaact 167  Q
    ||||||||||||||  ||| || || ||||| || |||||||||||| | |||||||||||||||||||||||| |||| || |||||||  | ||||||    
T  2911458 aaggcaatggttaaagaatttaaaagtagaagttttgtcttgaaaatgtaagatgttacatttgatcaagtaatgattatactacttttttttaaaaact 2911557  T
Q  168 tacttgtttt 177  Q
    || |||||||    
T  2911558 tatttgtttt 2911567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 2470499 - 2470354
Alignment:
Q  42 aaagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaat 141  Q
    ||||||||||| ||||| || ||  || | ||||||||||| ||||  |||||||||| | ||||||  |||||| |||| |||  |||| |||||||||    
T  2470499 aaagggtcttgctaaccagtaccctcaggacaatggttaaggaatcaccaaatagaaagtttgtctttgaaatataagatattatttttgttcaagtaat 2470400  T
Q  142 aattacacaactttttcattaaaacttacttgttttggatgattaa 187  Q
     |||| ||||||||||||| ||||||||| | |||| |||| ||||    
T  2470399 gattatacaactttttcataaaaacttacctattttagatgcttaa 2470354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 10008304 - 10008204
Alignment:
Q  78 ttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgtttt 177  Q
    ||||| |||||| ||| ||||||| |||||| ||||||| |   ||||| |||||||||||||||||||||| ||||||| || ||||||||||| ||||    
T  10008304 ttaaggaatctaaaaa-agaaattttgtcttaaaaatataaacggttacttttgatcaagtaataattacaccactttttaataaaaacttacttctttt 10008206  T
Q  178 gg 179  Q
    ||    
T  10008205 gg 10008204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 187
Target Start/End: Original strand, 17834969 - 17835086
Alignment:
Q  70 ggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaactta 169  Q
    |||| |||||||| | ||||||||||| |||  ||||||  |||||| |||| |||| |||||| |||||||||||| || | |||||||| |||||||     
T  17834969 ggcattggttaaggattctacaaatagcaatattgtctttgaaatataagatattacttttgattaagtaataattatacgattttttcatgaaaacttg 17835068  T
Q  170 cttgttttggatgattaa 187  Q
    ||||||||| ||| ||||    
T  17835069 cttgttttgaatgtttaa 17835086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 18493328 - 18493255
Alignment:
Q  105 tcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttg 178  Q
    |||||||||||| | ||||||| |||||||||||||| |||||| |||||||| || |||||||||||| ||||    
T  18493328 tcttgaaaatataaaatgttacttttgatcaagtaattattacaaaacttttttataaaaacttacttgatttg 18493255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 19320239 - 19320372
Alignment:
Q  45 gggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataat 144  Q
    |||||||| ||||  |||||  ||||| |||| ||||| |||||||||||| |  || ||||||| |||||| | ||||||| |||||| ||||||  ||    
T  19320239 gggtcttgctaactagtgccctcaaggtaatgattaaggaatctacaaataaattttttgtcttgcaaatataaaatgttacttttgataaagtaacgat 19320338  T
Q  145 tacacaact-ttttcattaaaacttacttgtttt 177  Q
    ||||||||| |||| || ||||||||||||||||    
T  19320339 tacacaactctttttatgaaaacttacttgtttt 19320372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 8636785 - 8636859
Alignment:
Q  118 agatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatgattaagcatt 192  Q
    ||||||||| |||||| ||||||| |||||| ||||||||||| ||||||||||| ||||| ||| |||| ||||    
T  8636785 agatgttacttttgataaagtaatgattacataactttttcatgaaaacttacttattttgtatgcttaatcatt 8636859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 17345843 - 17345952
Alignment:
Q  78 ttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgtttt 177  Q
    ||||| |||| ||||||| ||||| ||| || ||||||| | ||||||| ||||||||||||   |||||| |||||||||| ||||| ||| |||||||    
T  17345843 ttaaggaatcaacaaataaaaattttgttttaaaaatataaaatgttacttttgatcaagtagcgattacataactttttcactaaaatttatttgtttt 17345942  T
Q  178 ggatgattaa 187  Q
    | ||| ||||    
T  17345943 gaatgcttaa 17345952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 30929615 - 30929465
Alignment:
Q  72 caatggttaagaaatctacaaatagaaa-ttctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcatt--aaaactt 168  Q
    ||||||||||  |||||| || |||||| || || ||||||||| | ||||||||||||||||||| ||||||||| || ||||||| |||  |||| ||    
T  30929615 caatggttaaagaatctaaaagtagaaagttttgccttgaaaatttaagatgttacatttgatcaaataataattatactacttttt-attaaaaaattt 30929517  T
Q  169 acttgttttggatgattaagcattgcccttgaagcactggttaaccttctcc 220  Q
    ||||||||| |  | |||| || |||||||| |||||| |||| | ||||||    
T  30929516 acttgttttagtcgcttaaccaatgcccttggagcactagttagcattctcc 30929465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 27082373 - 27082322
Alignment:
Q  128 tttgatcaagtaataattacacaactttttcattaaaacttacttgttttgg 179  Q
    ||||||||| |||| |||||||||||||||||| |||| |||||||||||||    
T  27082373 tttgatcaaataatcattacacaactttttcatgaaaatttacttgttttgg 27082322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 12677935 - 12677833
Alignment:
Q  75 tggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgt 174  Q
    ||||||||||||| | || |||||||| | ||||  |||| ||||   |||||||||| |||||||| ||||||| |||||||  | |||||||||||||    
T  12677935 tggttaagaaatccataagtagaaattttctcttagaaatgtgagcgattacatttgaccaagtaatgattacactactttttattaaaaacttacttgt 12677836  T
Q  175 ttt 177  Q
    |||    
T  12677835 ttt 12677833  T

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Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 17453942 - 17454046
Alignment:
Q  46 ggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataatt 145  Q
    ||||||| ||||| |||||| || |||| |||||||  | | || ||||  ||||| | | |||||||||| ||||||||| |||||||| |||||||||    
T  17453942 ggtcttgctaaccagtgccttcagggcattggttaacgattttataaatgaaaattttattttgaaaatataagatgttacttttgatcacgtaataatt 17454041  T
Q  146 acaca 150  Q
    |||||    
T  17454042 acaca 17454046  T

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Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 2613366 - 2613420
Alignment:
Q  91 aaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataatt 145  Q
    ||||||||||| |||||| ||||||| || || ||| ||||||||||||||||||    
T  2613366 aaatagaaattttgtcttaaaaatataagttgctacttttgatcaagtaataatt 2613420  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 2398125 - 2398040
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttc 158  Q
    |||| ||||| |||||| ||||||||| | | |||||||||||| || | | || |||||| ||||||||||||||  ||||||||    
T  2398125 aatgattaaggaatctataaatagaaaatttatcttgaaaatataagttttgacttttgattaagtaataattacatcactttttc 2398040  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 17506411 - 17506299
Alignment:
Q  45 gggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataat 144  Q
    |||||||||||||| ||||  |  ||||| ||||||||||||||| ||||| || || | | ||| |||||| |  ||| || ||| |||||||||||||    
T  17506411 gggtcttgttaaccagtgctccggaggcactggttaagaaatctataaatataatttatattttggaaatataaactgtcactttttatcaagtaataat 17506312  T
Q  145 tacacaacttttt 157  Q
    ||||  |||||||    
T  17506311 tacattacttttt 17506299  T

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Target: scaffold0204 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 225
Target Start/End: Original strand, 15362 - 15514
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttactt 172  Q
    |||| ||||| ||| || |||||||| || |||||||||||||| ||||||||| ||||| |||||||  |||| |||  |||||||| |||||||||||    
T  15362 aatgattaaggaatttataaatagaatttttgtcttgaaaatataagatgttacttttgaccaagtaacgattatacacatttttcataaaaacttactt 15461  T
Q  173 gttttggatgattaagcattgcccttgaagcactggttaaccttctccataaa 225  Q
     ||||| ||| |||| || | ||| |||  ||||| ||||| |||||||||||    
T  15462 attttgaatgtttaaccaatacccctgagacactgattaacattctccataaa 15514  T

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Target: scaffold0039 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 29988 - 30088
Alignment:
Q  78 ttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgtttt 177  Q
    ||||| |||||||||||||||| | | | |||||||||| ||||||||| ||| || || ||||||||||||||  ||||||| ||||||||||||||||    
T  29988 ttaaggaatctacaaatagaaactttattttgaaaatataagatgttacttttaattaaataataattacacaaacttttcataaaaacttacttgtttt 30087  T
Q  178 g 178  Q
    |    
T  30088 g 30088  T

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Target: scaffold0329 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 7475 - 7398
Alignment:
Q  73 aatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaa 151  Q
    |||||||||||||| ||| |||||||||| |||||||||||||| |||| |||| ||||||||| |||| |||||||||    
T  7475 aatggttaagaaatttacgaatagaaatt-tgtcttgaaaatataagatattacttttgatcaaataatgattacacaa 7398  T

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Target: scaffold0079 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 51764 - 51649
Alignment:
Q  72 caatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttact 171  Q
    ||||||||||| ||| |||||||| || || ||||||  |||||| | ||||||| |||||| ||||||| |||||| || |||||||| |||| ||| |    
T  51764 caatggttaaggaatttacaaataaaatttttgtctttgaaatataaaatgttacttttgattaagtaatgattacataattttttcataaaaatttatt 51665  T
Q  172 tgttttggatgattaa 187  Q
    | ||||||||| ||||    
T  51664 tattttggatgtttaa 51649  T

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Target: scaffold0036 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 36668 - 36565
Alignment:
Q  54 taaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaact 153  Q
    ||||||||||||  |||| |||| ||||  ||||| |||||| ||||| ||| |||||||||| ||||||||| |||||| || |||| |||| ||||||    
T  36668 taaccggtgcctttaaggtaatgattaaagaatcttcaaataaaaattttgttttgaaaatataagatgttacttttgattaaataatgattatacaact 36569  T
Q  154 tttt 157  Q
    ||||    
T  36568 tttt 36565  T

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Target: scaffold0283 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 3432 - 3350
Alignment:
Q  83 aaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaa 165  Q
    ||||||| ||||| ||||| |||||||||||||| | ||||||| |||||| ||||| | |||| ||||||||||||| ||||    
T  3432 aaatctataaataaaaattttgtcttgaaaatataaaatgttacttttgataaagtattgattatacaactttttcataaaaa 3350  T

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Target: scaffold0006 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 38946 - 38822
Alignment:
Q  45 gggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataat 144  Q
    ||||||||||||||||||||| |  || | ||||||| ||||||| |||||||| || | ||||| |||||| |  ||| |  ||| |||||||||||||    
T  38946 gggtcttgttaaccggtgccttcggggtactggttaaaaaatctataaatagaatttatatcttggaaatataaactgtcattttttatcaagtaataat 38847  T
Q  145 tacacaactttttcattaaaactta 169  Q
    ||||  ||||||| || ||||||||    
T  38846 tacattactttttaataaaaactta 38822  T

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Target: scaffold0299 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 197
Target Start/End: Original strand, 18014 - 18137
Alignment:
Q  75 tggttaagaaatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaac-tttttcattaaaacttacttg 173  Q
    |||||||| || ||| ||||||||| | | |||| ||||||| || | | || |||||| |||||||||||||||||| ||||| || |||| |||||||    
T  18014 tggttaaggaaactataaatagaaaatttatcttaaaaatataagttttgacttttgattaagtaataattacacaactttttttataaaaagttacttg 18113  T
Q  174 ttttggatgattaagcattgccct 197  Q
    |||||| || |||| || ||||||    
T  18114 ttttggttgcttaaccaatgccct 18137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 1237 - 1310
Alignment:
Q  42 aaagggtcttgttaaccggtgcctccaaggcaatggttaagaaatctacaaatagaaattctgtcttgaaaatat 116  Q
    ||||||||||||||||||||||| ||  ||||  ||||||| |||||| |||||||| |||||||||| ||||||    
T  1237 aaagggtcttgttaaccggtgcc-ccggggcacgggttaaggaatctataaatagaatttctgtcttggaaatat 1310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 1921 - 2018
Alignment:
Q  84 aatctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttggatg 182  Q
    |||||||||||||||||| ||||||| |||| | ||||||||| | | |  ||||||| ||||  ||| |||||||| |||||||| || |||||||||    
T  1921 aatctacaaatagaaattttgtcttgtaaat-taagatgttacttatcacaaagtaatgattatccaattttttcataaaaacttatttcttttggatg 2018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 16838 - 16932
Alignment:
Q  85 atctacaaatagaaattctgtcttgaaaatatgagatgttacatttgatcaagtaataattacacaactttttcattaaaacttacttgttttgg 179  Q
    ||||| |||||||  ||||||||||||||||| |  ||| || ||| ||||||||||||||| | || ||||| || |||||||| || ||||||    
T  16838 atctataaatagagtttctgtcttgaaaatataaactgtcactttttatcaagtaataattatataattttttaataaaaacttatttcttttgg 16932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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