View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3566_low_1 (Length: 485)
Name: NF3566_low_1
Description: NF3566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3566_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 16 - 479
Target Start/End: Complemental strand, 21876344 - 21875881
Alignment:
| Q |
16 |
aaaatcacaatgacatacatgattctaccatattcaccatcattcccaatgtgcactaagccaaagacttcaactgcgcaatcagatctgtgatgaattt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21876344 |
aaaatcacaatgacatacatgattctaccatattcaccatcattcccaacgttcactaagccaaagacttcaaccgcgcaatcagatctgtgatgaattt |
21876245 |
T |
|
| Q |
116 |
gttctgaattttcttatccaatagaaactctctccatttcatatgattttctcttatctgtttccctggctctttatcaacttccaccataacagttttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21876244 |
gttctgaattttcttatccaatagaaactccctccatttcatatgattttctcttatctgtttccctggctctttatcaacttccaccataacagttttc |
21876145 |
T |
|
| Q |
216 |
acagcctcaaacaatccctctttttcaaaaaatccatcttcatctttcctattcacctctaccccagccttcaaatcatcggcaatgagtttagaattta |
315 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21876144 |
acagcctcaaacaatccctctttctcaaaaaatccatcttcatctttcctattcacctctaccccagccttcaaatcatcagcaatgagtttagaattta |
21876045 |
T |
|
| Q |
316 |
aaaactgatcacccttgaaaggtagcaacaccaactgacaatcattaactatagcttctatcacagaactaaaaccagcatgacacacataatacccaac |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21876044 |
aaaactgatcacccttgaaaggtagcaacaccaactgacaatcattaactatagcttctatcacagaactaaaaccagcatgacacacataacacccaac |
21875945 |
T |
|
| Q |
416 |
acttgagtgcttcaatacaagttgttgttgcagccaaccactatgcacaattcccctatgcttc |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21875944 |
acttgagtgcttcaatacaagttgttgttgcagccaaccactatgcacaattcccctattcttc |
21875881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 67 - 418
Target Start/End: Complemental strand, 40444046 - 40443695
Alignment:
| Q |
67 |
tgcactaagccaaagacttcaactgcgcaatcagatctgtgatgaatttgttctgaattttcttatccaatagaaactctctccatttcatatgattttc |
166 |
Q |
| |
|
|||| |||||||||||||||| ||| | || |||||| |||| ||||| |||||| ||| ||||| || | ||||| ||||||||||| || ||||| |
|
|
| T |
40444046 |
tgcattaagccaaagacttcagctgagaaaccagatcaatgataaatttattctgattttctttatctaacataaacttcctccatttcatgtggttttc |
40443947 |
T |
|
| Q |
167 |
tcttatctgtttccctggctctttatcaacttccaccataacagttttcacagcct-caaacaatccctctttttcaaaaaatccatcttcatctttcct |
265 |
Q |
| |
|
|||||| ||||| |||||||| ||| | | |||||| | ||||||||| |||| |||| ||| ||||| | |||| ||||||||| || ||||| |
|
|
| T |
40443946 |
tcttatgctcttccccggctctttctcatcattcaccatgatagttttcactgccttcaaaatatct-tctttatgaaaatatccatcttggtccttcct |
40443848 |
T |
|
| Q |
266 |
attcacctctaccccagccttcaaatcatcggcaatgagtttagaatttaaaaactgatcacccttgaaaggtagcaacaccaactgacaatcattaact |
365 |
Q |
| |
|
||||||||| | ||| |||| |||||||| |||||||| |||||||| |||||||| |||||||| ||||||| | ||| | |||||||||||||| |
|
|
| T |
40443847 |
attcacctcaatccctgcctccaaatcattagcaatgagcttagaattgaaaaactggtcacccttaaaaggtaatagcacaagttgacaatcattaacc |
40443748 |
T |
|
| Q |
366 |
atagcttctatcacagaactaaaaccagcatgacacacataatacccaacact |
418 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| |||||| | |||||||| |
|
|
| T |
40443747 |
atagcttcaatcacagaactaaaaccaccatgacaaacataacatccaacact |
40443695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 75 - 406
Target Start/End: Complemental strand, 40441613 - 40441282
Alignment:
| Q |
75 |
gccaaagacttcaactgcgcaatcagatctgtgatgaatttgttctgaattttcttatccaatagaaactctctccatttcatatgattttctcttatct |
174 |
Q |
| |
|
||||||||||||| ||| |||| |||||| |||| ||||| |||||||||| ||||| || | ||||| ||||||||||| || ||||||||||| |
|
|
| T |
40441613 |
gccaaagacttcagctgagcaaccagatcaatgataaatttattctgaatttctttatctaacataaacttcctccatttcatgtggttttctcttatgc |
40441514 |
T |
|
| Q |
175 |
gtttccctggctctttatcaacttccaccataacagttttcacagcctcaaacaatccctctttttcaaaaaatccatcttcatctttcctattcacctc |
274 |
Q |
| |
|
||||| |||||||| ||| | |||| ||| | ||||||| |||| | | | ||||| | |||| |||||||||| || || ||||||||||| |
|
|
| T |
40441513 |
tcttcccaggctctttctcaccatccatcatgatgattttcactgccttcagaatactctcttgatgaaaatatccatcttcttcctttctattcacctc |
40441414 |
T |
|
| Q |
275 |
taccccagccttcaaatcatcggcaatgagtttagaatttaaaaactgatcacccttgaaaggtagcaacaccaactgacaatcattaactatagcttct |
374 |
Q |
| |
|
| ||| |||| |||||||| |||||||| |||||||| |||||||| |||||||||||||||| || ||| | ||||||||||| || |||||||| |
|
|
| T |
40441413 |
aatccctgcctccaaatcattagcaatgagcttagaattaaaaaactggtcacccttgaaaggtaacagcacaagttgacaatcattgaccatagcttca |
40441314 |
T |
|
| Q |
375 |
atcacagaactaaaaccagcatgacacacata |
406 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |
|
|
| T |
40441313 |
gtcacagaactaaaaccaccatgacaaacata |
40441282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University