View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3566_low_14 (Length: 250)
Name: NF3566_low_14
Description: NF3566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3566_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 38827003 - 38827242
Alignment:
| Q |
1 |
tttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcctttagccatttgtcgatgcaacgaacatggaaaccatgattgcatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38827003 |
tttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgattttagccatttgtcgatgcaacgaacatggaaaccatgattgcatt |
38827102 |
T |
|
| Q |
101 |
taggtaaaatgcgcaccttttcaccttttgtgaattctgagagacatattacacactctgtatccaaacttggtagtttcaagtcagttgaataacttaa |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||||| |
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| T |
38827103 |
taggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacacactctgtatccaaagttggtagttttaactcagttgaataacttac |
38827202 |
T |
|
| Q |
201 |
tgttggaaatgtcttgagagctttcttcttgattcctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
38827203 |
tgttggaaatgtcttgagagctttcttcttgattcctttg |
38827242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 38846611 - 38846850
Alignment:
| Q |
1 |
tttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcctttagccatttgtcgatgcaacgaacatggaaaccatgattgcatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38846611 |
tttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgattttagccatttgtcgatgcaacgaacatggaaaccatgattgcatt |
38846710 |
T |
|
| Q |
101 |
taggtaaaatgcgcaccttttcaccttttgtgaattctgagagacatattacacactctgtatccaaacttggtagtttcaagtcagttgaataacttaa |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
38846711 |
taggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacacactctgtatccaaagttggtagtttcaactcagttgaataacttac |
38846810 |
T |
|
| Q |
201 |
tgttggaaatgtcttgagagctttcttcttgattcctttg |
240 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||| |
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| T |
38846811 |
tgttgggaatgtcttgagagctttcttcttgattcctttg |
38846850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 38840791 - 38841029
Alignment:
| Q |
1 |
tttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcctttagccatttgtcgatgcaacgaacatggaaaccatgattgcatt |
100 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| || |||||||| ||| | |||||||||||||| |||||||||||||| || ||||| ||||||| |
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| T |
38840791 |
tttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggttgcatt |
38840890 |
T |
|
| Q |
101 |
taggtaaaatgcgcaccttttcaccttttgtgaattctgagagacatattacacactctgtatccaaacttggtagtttcaagtcagttgaataacttaa |
200 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| |||||||||||||| | ||| |||| ||||||||||||||||||||||||||||| || || | |
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| T |
38840891 |
taggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcatacattctgcgtccaaacttggtagtttcaagtcagttgagtagctcac |
38840990 |
T |
|
| Q |
201 |
tgttggaaatgtcttgagagctttcttcttgattccttt |
239 |
Q |
| |
|
||| ||||||| ||| ||||||||||||||||||||||| |
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| T |
38840991 |
tgtgggaaatgccttaagagctttcttcttgattccttt |
38841029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 38858529 - 38858767
Alignment:
| Q |
1 |
tttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcctttagccatttgtcgatgcaacgaacatggaaaccatgattgcatt |
100 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| || |||||||| ||| | |||||||||||||| |||||||||||||| || ||||| ||||||| |
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|
| T |
38858529 |
tttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggttgcatt |
38858628 |
T |
|
| Q |
101 |
taggtaaaatgcgcaccttttcaccttttgtgaattctgagagacatattacacactctgtatccaaacttggtagtttcaagtcagttgaataacttaa |
200 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| |||||||||||||| | ||| |||| ||||||||||||||||||||||||||||| || || | |
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| T |
38858629 |
taggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcatacattctgcgtccaaacttggtagtttcaagtcagttgagtagctcac |
38858728 |
T |
|
| Q |
201 |
tgttggaaatgtcttgagagctttcttcttgattccttt |
239 |
Q |
| |
|
||| ||||||| ||| ||||||||||||||||||||||| |
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| T |
38858729 |
tgtgggaaatgccttaagagctttcttcttgattccttt |
38858767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 38851113 - 38850874
Alignment:
| Q |
1 |
tttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcctttagccatttgtcgatgcaacgaacatggaaaccatgattgcatt |
100 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| || |||||||| ||| | |||||||||||||| |||||||||||||| || ||||| ||||||| |
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|
| T |
38851113 |
tttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggttgcatt |
38851014 |
T |
|
| Q |
101 |
taggtaaaatgcgcaccttttcaccttttgtgaattctgagagacatattacacactctgtatccaaacttggtagtttcaagtcagttgaataacttaa |
200 |
Q |
| |
|
|||| |||||||||| |||||||| |||||||| |||||||||||||| | ||| |||||||||||||||||||| ||||| || || ||||| || | |
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| T |
38851013 |
taggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatcatacaatctgtatccaaacttggtagattcaactcggtggaatagctcat |
38850914 |
T |
|
| Q |
201 |
tgttggaaatgtcttgagagctttcttcttgattcctttg |
240 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||| |
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| T |
38850913 |
tgtaggaaatttcttgagagctttcttcttgattcctttg |
38850874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 38861403 - 38861642
Alignment:
| Q |
1 |
tttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcctttagccatttgtcgatgcaacgaacatggaaaccatgattgcatt |
100 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| || |||||||| ||| | |||||||||||||| |||||||||||||| || ||||| ||||||| |
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|
| T |
38861403 |
tttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggttgcatt |
38861502 |
T |
|
| Q |
101 |
taggtaaaatgcgcaccttttcaccttttgtgaattctgagagacatattacacactctgtatccaaacttggtagtttcaagtcagttgaataacttaa |
200 |
Q |
| |
|
|||| |||||||||| |||||||| |||||||| |||||||||||||| | ||| |||||||||||||||||||| ||||| || || ||||| || | |
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|
| T |
38861503 |
taggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatcatacaatctgtatccaaacttggtagattcaactcggtggaatagctcat |
38861602 |
T |
|
| Q |
201 |
tgttggaaatgtcttgagagctttcttcttgattcctttg |
240 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38861603 |
tgtaggaaatttcttgagagctttcttcttgattcctttg |
38861642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 38864858 - 38865097
Alignment:
| Q |
1 |
tttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcctttagccatttgtcgatgcaacgaacatggaaaccatgattgcatt |
100 |
Q |
| |
|
|||| |||||| ||||| || || ||||| ||||| || ||||||| |||| |||||||||||||||| ||||||||||| || || ||||| ||||||| |
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|
| T |
38864858 |
tttctacaagtttcaagaagacattgtctacactttggacatgatgggtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatt |
38864957 |
T |
|
| Q |
101 |
taggtaaaatgcgcaccttttcaccttttgtgaattctgagagacatattacacactctgtatccaaacttggtagtttcaagtcagttgaataacttaa |
200 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| || |||||||||||||| | ||||||||||||||||||||| |||||||| |||| |||||| || | |
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|
| T |
38864958 |
taggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaatagctcac |
38865057 |
T |
|
| Q |
201 |
tgttggaaatgtcttgagagctttcttcttgattcctttg |
240 |
Q |
| |
|
||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
38865058 |
tgtggggaatgttttgagagctttcttcttgattcctttg |
38865097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 43666059 - 43666239
Alignment:
| Q |
56 |
ttagccatttgtcgatgcaacgaacatggaaaccatgattgcatttaggtaaaatgcgcaccttttcaccttttgtgaattctgagagacatattacaca |
155 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||| || || || || |||| |||||| || || || || ||||| || || |||||||| ||||| |
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| T |
43666059 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactccgacagacatatcacaca |
43666158 |
T |
|
| Q |
156 |
ctctgtatccaaacttggtagtttcaagtcagttgaataacttaatgttggaaatgtcttgagagctttcttcttgattcc |
236 |
Q |
| |
|
||| | |||||||| || | ||||| ||| ||| ||||| | ||| | ||| ||||||||||||||||||||||||| |
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|
| T |
43666159 |
ctccgagtccaaactcggcaatttcagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
43666239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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