View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3566_low_2 (Length: 445)
Name: NF3566_low_2
Description: NF3566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3566_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Complemental strand, 3430210 - 3429796
Alignment:
| Q |
11 |
cacagacaaggttgacataatggcctcttgtttctctcggttgttgttgctcctgacacttccttagactctccggcaattggtatatcaaaacttaaat |
110 |
Q |
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| T |
3430210 |
cacaaacaaggttgacataatggcctcttgtttctctcggttgttgttgctcctgacacttccttagactctccggcaattggtatatcaaaacttaaat |
3430111 |
T |
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| Q |
111 |
tcaatttgatggaagatcaagagtgggatccttagtattagatcattgtataaaaagcctggttaggagtcatgttcggttggttatctctccaacatgt |
210 |
Q |
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| T |
3430110 |
tcaatttgatggaagatcaagagtgggatccttagtattagatcattgtataaaaagcctggttaggagtcatgttcggttggttatctctccaacatgt |
3430011 |
T |
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| Q |
211 |
tattggttaga--acaatcccaatc---taatacatgtggctccatagaccta------attaattacaattggtttgcatttgttccttaacaaacctt |
299 |
Q |
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| T |
3430010 |
tattggttagaatacaatcccaatctaataatacatgtggctccatagacctaattgtcattgattacaattggtttgcatttgttccttaacaaacctt |
3429911 |
T |
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| Q |
300 |
ttc--atatagtcgtgatcaatataaacagcctcacttatgtctgatcaaaattgctaattaagatgttcattcctttactcaaatatatgttgagattg |
397 |
Q |
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| T |
3429910 |
ttcatatataggcgtgatcaatataaacagcctcacttatgtctgatcaaaattgctaattaagatgttcattcct---------tatatgttgagattg |
3429820 |
T |
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| Q |
398 |
atggtgtttatcttcttcggtacg |
421 |
Q |
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| T |
3429819 |
atggtgtttatcttcttcggtacg |
3429796 |
T |
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