View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3566_low_23 (Length: 215)
Name: NF3566_low_23
Description: NF3566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3566_low_23 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 24924154 - 24923972
Alignment:
| Q |
33 |
taatgatatcagttgacaaaaaagtactcctcggagaagtagtctacctgagctggggaaatacaaaaactaacgcaaaggaagaaagtgctgatccgca |
132 |
Q |
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| T |
24924154 |
taatgatattagttgacaaaaaagtactcctcggagaagtagtctagctgagctggggaaacacaaaaactaacgcaaaggaagaaagtgctgatccgca |
24924055 |
T |
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| Q |
133 |
caggcgtatccaaaatgatatctcaccgttcaaataaacttatcgacgttcactattcattttctcaatacgcacggatcgct |
215 |
Q |
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| T |
24924054 |
caggcgaatccaaaatgatatctcaccgttcaaataaacttatcgacgttcactattctttttctcaatacgcacggatcgct |
24923972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 25084587 - 25084705
Alignment:
| Q |
96 |
caaaaactaacgcaaaggaagaaagtgctgatccgcacaggcgtatccaaaatgatatctcaccgttcaaataaacttatcgacgttcactattcatttt |
195 |
Q |
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| T |
25084587 |
caaaaactagcacaaaggtaggaagcgctgatccgcacagacgcatt-aaaatgaaaacggaccgttcaaatatactcatcgacggtcattattattttt |
25084685 |
T |
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| Q |
196 |
ctcaatacgcacggatcgct |
215 |
Q |
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| T |
25084686 |
ctcaatacgcacggatcgct |
25084705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 24497812 - 24497771
Alignment:
| Q |
172 |
ttatcgacgttcactattcattttctcaatacgcacggatcg |
213 |
Q |
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| T |
24497812 |
ttatcgacgttcactattcatttgggcaatacgcacggatcg |
24497771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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