View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3566_low_24 (Length: 204)

Name: NF3566_low_24
Description: NF3566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3566_low_24
NF3566_low_24
[»] chr4 (11 HSPs)
chr4 (15-186)||(3671331-3671502)
chr4 (28-162)||(55636898-55637032)
chr4 (24-162)||(52983286-52983424)
chr4 (28-161)||(54861185-54861318)
chr4 (28-161)||(54629891-54630024)
chr4 (28-162)||(55663993-55664127)
chr4 (28-162)||(55619406-55619540)
chr4 (28-162)||(55626710-55626844)
chr4 (28-162)||(55657756-55657890)
chr4 (28-78)||(51316255-51316305)
chr4 (28-117)||(50190412-50190501)
[»] chr8 (1 HSPs)
chr8 (28-161)||(9891185-9891318)
[»] chr2 (1 HSPs)
chr2 (29-162)||(13403306-13403439)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 3671502 - 3671331
Alignment:
Q  15 cagagagcagatacaggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgg 114  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671502 cagagagtagatacaggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgg 3671403  T
Q  115 gcactctctaatgctacatctggcagtacccatgagcaaatcgagtatttggcgagccagggttgcattaag 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671402 gcactctctaatgctacatctggcagtacccatgagcaaatcgagtatttggcgagccagggttgcattaag 3671331  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 55636898 - 55637032
Alignment:
Q  28 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 127  Q
    |||||||||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||||| |  ||| ||||| ||||||||||||| |||||    
T  55636898 caggctgttattgaagctagtctgattgcccccctagtcaatcttcttcaaaatgccgagtttgacattgcaaaagaagctgcatgggcactctttaatg 55636997  T
Q  128 ctacatctggcagtacccatgagcaaatcgagtat 162  Q
     |||||||||  ||||||||||||||||| |||||    
T  55636998 ttacatctggtggtacccatgagcaaatcaagtat 55637032  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 52983424 - 52983286
Alignment:
Q  24 gatacaggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctct 123  Q
    ||||||||||||||||||||||||||||||||| || || ||||||||||||||| |||| |||||||||| |  ||| ||||| |||||||||||||||    
T  52983424 gatacaggctgttattgaagctggtctgattgctcccctagtcaatcttcttcaatatgccgagtttgacattaaaaaagaagctgcatgggcactctct 52983325  T
Q  124 aatgctacatctggcagtacccatgagcaaatcgagtat 162  Q
    |||||||| | | |  |||||| |||||||||| |||||    
T  52983324 aatgctacgtttagtggtacccctgagcaaatcaagtat 52983286  T

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Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 54861318 - 54861185
Alignment:
Q  28 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 127  Q
    |||||||| |||||||||||| ||||||| || || |||||||||||||||||||| |||||||||| |  ||| ||||| |||||||||||| ||||||    
T  54861318 caggctgtcattgaagctggtttgattgctcccctagtcaatcttcttcaaaatgctgagtttgacattaaaaaagaagctgcatgggcactcactaatg 54861219  T
Q  128 ctacatctggcagtacccatgagcaaatcgagta 161  Q
    ||||||| ||  ||||||| ||||||||| ||||    
T  54861218 ctacatcaggtggtacccacgagcaaatcaagta 54861185  T

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Target: chr4; HSP #5
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 54629891 - 54630024
Alignment:
Q  28 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 127  Q
    ||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||||||||| |  ||||||||  |||  ||||||| ||||||    
T  54629891 caggctgttattgaagctggtctgattgctcccctagtcaatcttcttcaaaatgcagagtttgacattacaaaggaagttgcacaggcactcactaatg 54629990  T
Q  128 ctacatctggcagtacccatgagcaaatcgagta 161  Q
     |||||||||  ||||||| ||||| ||| ||||    
T  54629991 ttacatctggtggtacccacgagcatatcaagta 54630024  T

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Target: chr4; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 28 - 162
Target Start/End: Complemental strand, 55664127 - 55663993
Alignment:
Q  28 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 127  Q
    ||||||||||||||||||||||| ||||| || || || ||||||||||||||||| || |||||   |  ||| ||||| ||||||||| | | |||||    
T  55664127 caggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatg 55664028  T
Q  128 ctacatctggcagtacccatgagcaaatcgagtat 162  Q
    ||||||||||| ||||||||||||||||| |||||    
T  55664027 ctacatctggcggtacccatgagcaaatcaagtat 55663993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 162
Target Start/End: Complemental strand, 55619540 - 55619406
Alignment:
Q  28 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 127  Q
    |||||||||||  |||||||||||||||| || || |||||||||||||||||||| ||| |||  | |  ||| ||||| ||||||||||||  |||||    
T  55619540 caggctgttatcaaagctggtctgattgctcccctagtcaatcttcttcaaaatgccgagcttgcgattaaaaaagaagctgcatgggcactccgtaatg 55619441  T
Q  128 ctacatctggcagtacccatgagcaaatcgagtat 162  Q
    |||||||||   |||| |||||||||||| |||||    
T  55619440 ctacatctgatggtactcatgagcaaatcaagtat 55619406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 162
Target Start/End: Complemental strand, 55626844 - 55626710
Alignment:
Q  28 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 127  Q
    ||||||||||| ||||||||||||||||| || || |||||||||||||||||||| ||| |||  | |  ||| ||||| ||||| ||||||  |||||    
T  55626844 caggctgttatcgaagctggtctgattgctcccctagtcaatcttcttcaaaatgccgagcttgcgattaaaaaagaagctgcatgtgcactccgtaatg 55626745  T
Q  128 ctacatctggcagtacccatgagcaaatcgagtat 162  Q
    |||||||||   |||| |||||||||||| |||||    
T  55626744 ctacatctgatggtactcatgagcaaatcaagtat 55626710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 162
Target Start/End: Complemental strand, 55657890 - 55657756
Alignment:
Q  28 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 127  Q
    |||||||||||  |||||||||||||||| || || |||||||||||||||||||| ||| |||  | |  ||| ||||| ||||||||||||  |||||    
T  55657890 caggctgttatcaaagctggtctgattgctcccctagtcaatcttcttcaaaatgccgagcttgcgattaaaaaagaagctgcatgggcactccgtaatg 55657791  T
Q  128 ctacatctggcagtacccatgagcaaatcgagtat 162  Q
    |||||||||   |||| |||||||||||| |||||    
T  55657790 ctacatctgatggtactcatgagcaaatcaagtat 55657756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 51316255 - 51316305
Alignment:
Q  28 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaa 78  Q
    ||||||||||||||||||||||| ||||| || |||||| |||||||||||    
T  51316255 caggctgttattgaagctggtctcattgctcccctggtcgatcttcttcaa 51316305  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 50190501 - 50190412
Alignment:
Q  28 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggca 117  Q
    |||||||||||||| || ||||| ||||| || || ||||  |||||||||||||| |||||||||| |  ||| ||||| |||||||||    
T  50190501 caggctgttattgatgccggtcttattgctccacttgtcagacttcttcaaaatgcagagtttgacattaaaaaagaagctgcatgggca 50190412  T

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Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 9891185 - 9891318
Alignment:
Q  28 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9891185 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 9891284  T
Q  128 ctacatctggcagtacccatgagcaaatcgagta 161  Q
    ||||||||||||||||||||||||||||||||||    
T  9891285 ctacatctggcagtacccatgagcaaatcgagta 9891318  T

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Target: chr2 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 13403306 - 13403439
Alignment:
Q  29 aggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatgc 128  Q
    |||||||||||||||| || |||||||| |||||||||||||||||||||||||| || ||||||| |  ||| ||||| |||||||||||||| |||||    
T  13403306 aggctgttattgaagccggactgattgctcctctggtcaatcttcttcaaaatgccgaatttgacattaaaaaagaagctgcatgggcactctccaatgc 13403405  T
Q  129 tacatctggcagtacccatgagcaaatcgagtat 162  Q
    |||||||||| ||||||||||||||||| |||||    
T  13403406 tacatctggcggtacccatgagcaaatcaagtat 13403439  T

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