View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3566_low_4 (Length: 361)
Name: NF3566_low_4
Description: NF3566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3566_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 6 - 345
Target Start/End: Original strand, 17725214 - 17725556
Alignment:
| Q |
6 |
agataccttaaaagctactgcaattaaaatgtttgaagcattcaaacatt---ccctcaatatttttcaatgaattgcttgatgaacaacatcaattctt |
102 |
Q |
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| T |
17725214 |
agataccttaaaagctactgcaattaaaatgtttgaagcattcaaacattattcccttaatatttctcaatgaattgcttgatgaccaacatcaattctt |
17725313 |
T |
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| Q |
103 |
ttgatggttctgaatttggatcaagagtgaagaacccatgctgttgtccttcaaattctacatactctatatttttaccccaattcttaagccttcttac |
202 |
Q |
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| T |
17725314 |
ttgatggttctgaatttggatcaatagtgaagaacccatgctgttgtccttcaaattctacatactctatatttttaccccaattcttaagccttcttgc |
17725413 |
T |
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| Q |
203 |
ataatcatctgtcctatctttaagcaaatcattttctccaaccaccacaagaattgggtcaagatcaatttcctcaagactcttacttcttggtccaaat |
302 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17725414 |
ataatcctctgtcctatctttaagcaaatcattttctccaaccaccacaagaattgggtcaagatcaatttcctcaagactcttacttcttggtccaaat |
17725513 |
T |
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| Q |
303 |
ggattcacaagtgggtgatcagtatcttctccaatgggtatag |
345 |
Q |
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| T |
17725514 |
ggattcacaagtgggtgatcagtatcttctccaatgggtatag |
17725556 |
T |
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