View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3566_low_6 (Length: 333)

Name: NF3566_low_6
Description: NF3566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3566_low_6
NF3566_low_6
[»] chr7 (6 HSPs)
chr7 (120-328)||(43119097-43119298)
chr7 (21-123)||(43119647-43119750)
chr7 (21-84)||(43119461-43119524)
chr7 (82-125)||(43119322-43119366)
chr7 (130-166)||(49013049-49013085)
chr7 (176-208)||(38177747-38177779)
[»] chr8 (1 HSPs)
chr8 (122-208)||(25105711-25105797)
[»] chr4 (3 HSPs)
chr4 (120-207)||(8019961-8020048)
chr4 (127-164)||(7593144-7593181)
chr4 (128-185)||(8019528-8019585)
[»] chr6 (2 HSPs)
chr6 (120-208)||(21917346-21917434)
chr6 (127-197)||(18239246-18239315)
[»] chr2 (6 HSPs)
chr2 (129-208)||(8442616-8442695)
chr2 (127-205)||(3960856-3960934)
chr2 (120-202)||(26674105-26674187)
chr2 (134-164)||(37940462-37940492)
chr2 (120-208)||(22311667-22311755)
chr2 (120-160)||(36168676-36168716)
[»] chr3 (2 HSPs)
chr3 (139-207)||(18391942-18392010)
chr3 (133-196)||(54697932-54697995)
[»] scaffold0236 (1 HSPs)
scaffold0236 (127-185)||(16928-16986)
[»] chr5 (1 HSPs)
chr5 (130-158)||(15069748-15069776)
[»] chr1 (2 HSPs)
chr1 (120-160)||(23998908-23998948)
chr1 (120-208)||(27580744-27580832)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 120 - 328
Target Start/End: Complemental strand, 43119298 - 43119097
Alignment:
Q  120 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactccttactcattc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       |    
T  43119298 aaatatatgcatttatatcatgtatttactacaaaactatagtaatgaatgttgccatttattttaaaaaatggagagaatctcaactcctt-------c 43119206  T
Q  220 aaagaaataaaactcactactctcacaaataatccggccactcttcttcgcattcaatttcgttgttttcgtatacaccgactcactcaacattgctacc 319  Q
    ||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  43119205 aaagaaataaaactcgctactctcagtaataatccggccactcttcttcgcattcaatttcgttgtttttgtatacaccgactcactcaacattgctact 43119106  T
Q  320 tttgcttct 328  Q
    |||||||||    
T  43119105 tttgcttct 43119097  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 43119750 - 43119647
Alignment:
Q  21 cacgacgatcatcattcatcaatgttttattcacgagtgtagatcatctctattacttaataaaaatggcaatatcaattcttatag-tttcttgtgtat 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  43119750 cacgacgatcatcattcataaatgttttattcacgagtgtagatcatttctattacttaataaaaatggcaatatcaattcttatagtttttttgtgtat 43119651  T
Q  120 aaat 123  Q
    ||||    
T  43119650 aaat 43119647  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 43119524 - 43119461
Alignment:
Q  21 cacgacgatcatcattcatcaatgttttattcacgagtgtagatcatctctattacttaataaa 84  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43119524 cacgaccatcatcattcatcaatgttttattcacgagtgtagatcatctctattacttaataaa 43119461  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 43119366 - 43119322
Alignment:
Q  82 aaaaatggcaatatcaattcttatag-tttcttgtgtataaatat 125  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  43119366 aaaaatggcaatatcaattcttatagtttttttgtgtataaatat 43119322  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 49013049 - 49013085
Alignment:
Q  130 atttatatcatgtatttactacaaaactatagtaacg 166  Q
    ||||||||||||||||||||||| |||||||||||||    
T  49013049 atttatatcatgtatttactacataactatagtaacg 49013085  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 38177779 - 38177747
Alignment:
Q  176 atttattttaaaaaatggagagaatctcaactc 208  Q
    ||||||||||| |||||||||||||||||||||    
T  38177779 atttattttaataaatggagagaatctcaactc 38177747  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 25105711 - 25105797
Alignment:
Q  122 atatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 208  Q
    |||| |||||||||||  ||||||||||||||||||||||||| | ||||| |||||||||||| |||||||||| |||||||||||    
T  25105711 atatgtgcatttatatagtgtatttactacaaaactatagtaatggatgttaccatttattttagaaaatggagataatctcaactc 25105797  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 8019961 - 8020048
Alignment:
Q  120 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaact 207  Q
    |||||| ||||||||||||||||||||||  |||||||||||||| |||  ||||||||||||||| ||||| ||||| |||||||||    
T  8019961 aaatatgtgcatttatatcatgtatttacatcaaaactatagtaatgaacattgccatttattttagaaaattgagaggatctcaact 8020048  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 7593144 - 7593181
Alignment:
Q  127 tgcatttatatcatgtatttactacaaaactatagtaa 164  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  7593144 tgcatttatatcatatatttacttcaaaactatagtaa 7593181  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 8019528 - 8019585
Alignment:
Q  128 gcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttatttta 185  Q
    ||||||| |||||||||||||  |||||||||||||| |||  |||||||||| ||||    
T  8019528 gcatttacatcatgtatttacatcaaaactatagtaatgaacattgccatttaattta 8019585  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 21917434 - 21917346
Alignment:
Q  120 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 208  Q
    |||||| || ||||||||||||||||||||||||||||||||||| | |   ||| ||||||||||| |||||||||  ||||||||||    
T  21917434 aaatatgtgtatttatatcatgtatttactacaaaactatagtaatggaaactgcaatttattttaagaaatggagaatatctcaactc 21917346  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 18239246 - 18239315
Alignment:
Q  127 tgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagag 197  Q
    ||||||||||| |||||||||| |||||| |||||||| | || ||| |||||||| || |||||||||||    
T  18239246 tgcatttatataatgtatttac-acaaaaatatagtaatggatattgtcatttattgtagaaaatggagag 18239315  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 8442695 - 8442616
Alignment:
Q  129 catttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 208  Q
    ||||||||||||||||||||||||||| |||||||| |||  ||||||||||||  || |||| |||||||||| |||||    
T  8442695 catttatatcatgtatttactacaaaattatagtaatgaaaattgccatttattcaaagaaattgagagaatctgaactc 8442616  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 3960856 - 3960934
Alignment:
Q  127 tgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaa 205  Q
    |||||||||||||||||||||| ||||||||||||||| | |  ||  |||||||  || ||||||||||| |||||||    
T  3960856 tgcatttatatcatgtatttaccacaaaactatagtaatggacattatcatttatcgtagaaaatggagaggatctcaa 3960934  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 26674187 - 26674105
Alignment:
Q  120 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatct 202  Q
    |||||| || |||||||||||||||||||| |||||| ||||||| | |   |  |||||||||||  |||||||||||||||    
T  26674187 aaatatgtgtatttatatcatgtatttactccaaaacgatagtaatggacactatcatttattttaggaaatggagagaatct 26674105  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 37940462 - 37940492
Alignment:
Q  134 atatcatgtatttactacaaaactatagtaa 164  Q
    |||||||||||||||||||||||||||||||    
T  37940462 atatcatgtatttactacaaaactatagtaa 37940492  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 22311755 - 22311667
Alignment:
Q  120 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 208  Q
    |||||| |||||||||||||| |||||||   ||||||||||||| | |  |||| ||||||| ||  ||||| |||| ||||||||||    
T  22311755 aaatatgtgcatttatatcatttatttacacgaaaactatagtaatggacattgcaatttattgtagcaaatgaagaggatctcaactc 22311667  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 36168716 - 36168676
Alignment:
Q  120 aaatatatgcatttatatcatgtatttactacaaaactata 160  Q
    ||||||||||||||||||||| |||||| | ||||||||||    
T  36168716 aaatatatgcatttatatcatttatttattccaaaactata 36168676  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 18391942 - 18392010
Alignment:
Q  139 atgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaact 207  Q
    |||||||||||||||||||||||||| |  | |||||||||||| ||  ||||||||||||||||||||    
T  18391942 atgtatttactacaaaactatagtaatgggttttgccatttattataggaaatggagagaatctcaact 18392010  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 54697932 - 54697995
Alignment:
Q  133 tatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggaga 196  Q
    |||||||| ||||||||||||||||||||||||| || || | |||||| ||||||||| ||||    
T  54697932 tatatcatatatttactacaaaactatagtaacggatatttcaatttatcttaaaaaatagaga 54697995  T

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Target: scaffold0236 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 16986 - 16928
Alignment:
Q  127 tgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttatttta 185  Q
    ||||||||||| ||| ||||||||||||||||||  || |||  |||||||||||||||    
T  16986 tgcatttatatgatgcatttactacaaaactatacaaatgaacattgccatttatttta 16928  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 15069776 - 15069748
Alignment:
Q  130 atttatatcatgtatttactacaaaacta 158  Q
    |||||||||||||||||||||||||||||    
T  15069776 atttatatcatgtatttactacaaaacta 15069748  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 23998948 - 23998908
Alignment:
Q  120 aaatatatgcatttatatcatgtatttactacaaaactata 160  Q
    |||||| ||||||||||| ||||||||||||||||| ||||    
T  23998948 aaatatgtgcatttatattatgtatttactacaaaattata 23998908  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 27580744 - 27580832
Alignment:
Q  120 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 208  Q
    |||||| || |||||||| ||||||||| ||||||| ||||||||   |  ||| ||||||||||| |||||  |||| ||||||||||    
T  27580744 aaatatgtgtatttatattatgtatttattacaaaattatagtaatagacattgtcatttattttagaaaataaagaggatctcaactc 27580832  T

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