View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3567_high_19 (Length: 220)
Name: NF3567_high_19
Description: NF3567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3567_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 17575923 - 17575709
Alignment:
| Q |
1 |
aatgataaaataaagataggggtaaaataggtaatatgttaattatggcatcattcctacactccaagttgggggaacgaaaaattgaaggattgagtga |
100 |
Q |
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| T |
17575923 |
aatgataaaataaagataggggtaaaataggtaatatgttaattatggcatcattcctacactctaagttgggggaatgaaaaattgaaggattgagtga |
17575824 |
T |
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| Q |
101 |
tatgagatggaa----------taagttccattccacattattgattttttacaaatccaaataatagaatctacttacttacca-ccccatatcatccc |
189 |
Q |
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| T |
17575823 |
tatgagatggaatgaattccattatgttccatttcacattattgattttttacaaattcaaacaatagaatctacttacttaccacccccatatcatctc |
17575724 |
T |
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| Q |
190 |
attccatcacatacc |
204 |
Q |
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||||||||||||||| |
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| T |
17575723 |
attccatcacatacc |
17575709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 6390938 - 6391023
Alignment:
| Q |
116 |
gttccattccacattattgattttttacaaatccaaataatagaatctacttacttaccaccccatatcatcccattccatcacat |
201 |
Q |
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| T |
6390938 |
gttccattccactacatttatattttacaaatccaatcaatagaatctaataacttaccactccatttcattccattccatcacat |
6391023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 16483934 - 16483989
Alignment:
| Q |
1 |
aatgataaaataaagataggggtaaaataggtaatatgttaattatggcatcattcc |
57 |
Q |
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| T |
16483934 |
aatgataaaataaagataggggtaaaatgggtaatat-ttaattatgttatcattcc |
16483989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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