View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3567_high_20 (Length: 214)
Name: NF3567_high_20
Description: NF3567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3567_high_20 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 46920724 - 46920934
Alignment:
| Q |
4 |
ccgtcgttttctctctgctcttctccatttcaccaacatgcgtcgtgataatgttcaacctaacgacttcacttttccgtgtgttttcaaagcttctgct |
103 |
Q |
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| T |
46920724 |
ccgtcgttttctccctgctcttctccatttcaccaacatgcgtcgtgataatgttcaacctaacgacttcacttttccgtgtgttttcaaagcttctgct |
46920823 |
T |
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| Q |
104 |
cttttgcagatacccatgactggtaaacagattcacggtcttgctttaaagggtgggatgatatatgatgtgtttgttgggtgtagttgttttgatatgt |
203 |
Q |
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| T |
46920824 |
cttatgcagatacccatgactggtaaacagattcacggtcttgctttaaagggtgggatgatatatgatgtgtttgttgggtgtagttgttttgatatgt |
46920923 |
T |
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| Q |
204 |
attgtaaaact |
214 |
Q |
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| T |
46920924 |
attgtaaaact |
46920934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 38310881 - 38311091
Alignment:
| Q |
4 |
ccgtcgttttctctctgctcttctccatttcaccaacatgcgtcgtgataatgttcaacctaacgacttcacttttccgtgtgttttcaaagcttctgct |
103 |
Q |
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| T |
38310881 |
ccgtcgttttctccctgctcttcttcatttcaccaacatgcgtcgtgataatgttcaacctaacgacttcacttttccgtgtgttttcaaagcttctgct |
38310980 |
T |
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| Q |
104 |
cttttgcagatacccatgactggtaaacagattcacggtcttgctttaaagggtgggatgatatatgatgtgtttgttgggtgtagttgttttgatatgt |
203 |
Q |
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| T |
38310981 |
tttgtgcagatacccatgactggtaaacagattcacggtcttgctttaaagggtgggatgatatatgatgtgtttgttgggtgtagttgttttgatatgt |
38311080 |
T |
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| Q |
204 |
attgtaaaact |
214 |
Q |
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| T |
38311081 |
attgtaaaact |
38311091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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