View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3567_high_9 (Length: 325)
Name: NF3567_high_9
Description: NF3567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3567_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 1243687 - 1243389
Alignment:
| Q |
18 |
gtaccaagttcaaggcaaatctatgtgaaaagcaagtcaacactttgtagttcaagcttttggatcttgatatcattagtaccaaacgtctgactctgga |
117 |
Q |
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| T |
1243687 |
gtaccaagttcaaggcaaatctatgtgaaaagcaagtcaacactttgtagttcaagcttttggatcttgatatcattagtaccaaacgtctgactctgga |
1243588 |
T |
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| Q |
118 |
ctcgttattgatgctacgaccctttgtggagaaagaaaattttgttatgacttatgcaattgaatgatattcatcaaaatcatcattgatgaaaatgaat |
217 |
Q |
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| T |
1243587 |
ctcgttattgatgctacgaccctttgtggagaaagaaaattttgttatgacttatgcaattgaatgatattcatcaaaatcatcattgatgaaaatgaat |
1243488 |
T |
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| Q |
218 |
gaccgattcactaactacattaaatcaagaagatcacaatattcaatcaaacactcaaaaagaaggaattctttagcaacaatcatctactttcatctc |
316 |
Q |
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| T |
1243487 |
gaccgattcactaactacattaaatcaagaagatcacaatattcaatcaaacactcaaaaagaaggaattctttagcaacaatcatctactttcatctc |
1243389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 264
Target Start/End: Original strand, 13067215 - 13067332
Alignment:
| Q |
147 |
agaaagaaaattttgttatgacttatgcaattgaatgatattcatcaaaatcatcattgatgaaaatgaatgaccgattcactaactacattaaatcaag |
246 |
Q |
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|||||| ||| ||||||||||||||||||||||| | | ||||||||| | |||||||||| |||||||||| ||||| | | |||| | ||||||| |
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| T |
13067215 |
agaaaggaaactttgttatgacttatgcaattgagtaaaattcatcaagaccatcattgatagaaatgaatgattgattctttgagtacaattaatcaag |
13067314 |
T |
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| Q |
247 |
aagatcacaatattcaat |
264 |
Q |
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| T |
13067315 |
aatatctcaatattcaat |
13067332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 26201718 - 26201658
Alignment:
| Q |
158 |
tttgttatgacttatgcaattgaatgatattcatcaaaatcatcattgatgaaaatgaatg |
218 |
Q |
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|||||| |||||||||||||||| | | |||||| || | |||||||||| |||||||||| |
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| T |
26201718 |
tttgttttgacttatgcaattgagtaaaattcattaagagcatcattgatcaaaatgaatg |
26201658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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