View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3567_low_10 (Length: 334)
Name: NF3567_low_10
Description: NF3567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3567_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 18659208 - 18659522
Alignment:
| Q |
1 |
acagagcaaacacggtctgctacactcatatactcttctttagagaagttattaccttttggaagtctcaagtatgttgttcctacaaaacttggcgagt |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18659208 |
acagagcaaacccggtctgctacactcatatactcttctttagagaagttattaccttttggaaatctcaagtatgttgttcctacaaaacttggcgagt |
18659307 |
T |
|
| Q |
101 |
gcctcccatttaacaattgtagctttgtataacatttgaagatattttgaccatcttcatatgagtattggaatgccgtacagttacaatcttgtaaaca |
200 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18659308 |
gcctcccgtttaacaattgtagctttgtataacatttgaagatattttggccctcttcatatgagtattggaatgccgtacagttacaatcttgcaaaca |
18659407 |
T |
|
| Q |
201 |
taaactctcacaatttttgtaggtactattttgaacaaaattactgtcatagccgtagagctcgaaaccattcaattttaaaaaggtagactcacttcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18659408 |
taaactctcacaatttttgtaggtactattttgaacaaaattactgtcatagccgtagagctcgaaaccattcaattttaaaaaggtagactcacttcta |
18659507 |
T |
|
| Q |
301 |
ttacaagtaaaatca |
315 |
Q |
| |
|
||||||||||||||| |
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| T |
18659508 |
ttacaagtaaaatca |
18659522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 21123495 - 21123794
Alignment:
| Q |
18 |
tgctacactcatatactcttctttagagaagttattaccttttggaagtctcaagtatgt--tgttcctacaaaacttggcgagtgcctcccatttaaca |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
21123495 |
tgcttcactcatatactcttctttagagaagttattaccttttggaagtctcaagtatgtgctgttcctacaaaacttggtgagtgcctcccatttaaca |
21123594 |
T |
|
| Q |
116 |
attgtagctttgtataacatttgaagatattttgaccatcttcatatgagtattggaatgccgtacagttacaatcttgtaaacataaactctcacaatt |
215 |
Q |
| |
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||||||||||||||||||||||||| |||||||| || ||||||||| |||||||||| || |||| |||||||||||||||||||||||||||||||| |
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| T |
21123595 |
attgtagctttgtataacatttgaaaatattttggccttcttcatatttgtattggaatcccatacaattacaatcttgtaaacataaactctcacaatt |
21123694 |
T |
|
| Q |
216 |
tttgtaggtactattttgaacaaaattactgtcatagccgtagagctcgaaaccattcaattttaaaaaggtagactcacttctattacaagtaaaatca |
315 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21123695 |
tttgtaggtactattttgaacaaaatatttgtcatagccgtagagctcgaaaccattcaattttaaaaaggtagactcacttctattgcaagtaaaatca |
21123794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 15 - 315
Target Start/End: Original strand, 21112100 - 21112400
Alignment:
| Q |
15 |
gtctgctacactcatatactcttctttagagaagttattaccttttggaagtctcaagtatgttgttcctacaaaacttggcgagtgcctcccatttaac |
114 |
Q |
| |
|
||||| |||||| ||| ||||||| ||||||||||||||||||||||||||||||||| ||||| | |||| ||||||||| || ||||||||||||| | |
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|
| T |
21112100 |
gtctgttacacttatagactcttccttagagaagttattaccttttggaagtctcaagaatgttttgcctataaaacttggggaatgcctcccatttagc |
21112199 |
T |
|
| Q |
115 |
aattgtagctttgtataacatttgaagatattttgaccatcttcatatgagtattggaatgccgtacagttacaatcttgtaaacataaactctcacaat |
214 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| | ||||||||||||||||||||| | |||||||| ||| |||| ||||||||||||||||||| |
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| T |
21112200 |
aattgtagctttgtataacattggaagatgttttggtcctcttcatatgagtattggaatcctgtacagttgcaagcttgcaaacataaactctcacaat |
21112299 |
T |
|
| Q |
215 |
ttttgtaggtactattttgaacaaaattactgtcatagccgtagagctcgaaaccattcaattttaaaaaggtagactcacttctattacaagtaaaatc |
314 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| ||||| |||||||||||||||||| |||| ||||||||||| |
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| T |
21112300 |
tttcgtaggtactattttgaacaaaattactatcatagccgtagaactcaaaaccatgcaattcgaaaaaggtagactcacttttattgcaagtaaaatc |
21112399 |
T |
|
| Q |
315 |
a |
315 |
Q |
| |
|
| |
|
|
| T |
21112400 |
a |
21112400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 21 - 315
Target Start/End: Original strand, 21131066 - 21131360
Alignment:
| Q |
21 |
tacactcatatactcttctttagagaagttattaccttttggaagtctcaagtatgttgttcctacaaaacttggcgagtgcctcccatttaacaattgt |
120 |
Q |
| |
|
|||||||||| | |||| ||| ||||||||||||||||||| ||||||||||| ||| ||||| ||||||||| || | ||||||||| | ||||||| |
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|
| T |
21131066 |
tacactcatagattcttgtttgtagaagttattaccttttgggagtctcaagtaagttattccttgaaaacttggtgaatacctcccattcagcaattgt |
21131165 |
T |
|
| Q |
121 |
agctttgtataacatttgaagatat-tttgaccatcttcatatgagtattggaatgccgtacagttacaatcttgtaaacataaactctcacaatttttg |
219 |
Q |
| |
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| ||||||| | |||| |||||| |||| || ||| |||||| |||||| ||| || ||||||||||||||||||||||| || |||||||| ||||| |
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| T |
21131166 |
atctttgtaaagcattggaagatgcctttgtcc-tctgcatatgtgtattgaaatcccttacagttacaatcttgtaaacatgaagtctcacaaattttg |
21131264 |
T |
|
| Q |
220 |
taggtactattttgaacaaaattactgtcatagccgtagagctcgaaaccattcaattttaaaaaggtagactcacttctattacaagtaaaatca |
315 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| || ||||||| ||||| | |||||||||||| ||||| ||||||||||| |||||||||||| |
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|
| T |
21131265 |
taggtactgttttgaacaaaattattgtcataaccaaagagctcaaaaccttgcaattttaaaaaagtagattcacttctattgcaagtaaaatca |
21131360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 315
Target Start/End: Complemental strand, 21107506 - 21107471
Alignment:
| Q |
280 |
aaaaaggtagactcacttctattacaagtaaaatca |
315 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
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|
| T |
21107506 |
aaaaaggtagactcacttctattgcaagtaaaatca |
21107471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 21107752 - 21107652
Alignment:
| Q |
34 |
tcttctttagagaagttattaccttttggaagtctcaagtatgttgttcctacaaaacttggcgagtgcctcccatttaacaattgtagctttgtataac |
133 |
Q |
| |
|
||||||||||||||| |||||||||| || | |||||||| |||| ||||||||| ||| || ||||| |||||| ||||||| |||||||||| |
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| T |
21107752 |
tcttctttagagaaggtattacctttaggtaacctcaagtaggttgatcctacaaagaatggtgaatgccttccatttcgcaattgtgtttttgtataac |
21107653 |
T |
|
| Q |
134 |
a |
134 |
Q |
| |
|
| |
|
|
| T |
21107652 |
a |
21107652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 315
Target Start/End: Complemental strand, 39131684 - 39131376
Alignment:
| Q |
7 |
caaacacggtctgctacactcatatactcttctttagagaagttattaccttttggaagtctcaagtatgttgttcctacaaaacttggcgagtgcctcc |
106 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||| || | ||||| |
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| T |
39131684 |
caaacacggtcttctacactcatagactcttgtttagtgaagttattaccttttggaagtctcaagtaagttgttcctcgaaaacttggtgaatacctcc |
39131585 |
T |
|
| Q |
107 |
catttaacaattgtagctttgtataacatttgaagatattttgaccatcttcatatgagtattggaatgccgtacagttacaatcttgtaaacataaact |
206 |
Q |
| |
|
|||| ||||| | |||||||||||| ||||||||||| ||| | |||| ||| || ||||||| | | |||||||||||||| ||||||||| | |
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|
| T |
39131584 |
cattcaacaaatttagctttgtatagcatttgaagatgccttggtccctttcaaatgtgtgttggaatcctttgcagttacaatcttgcaaacataaagt |
39131485 |
T |
|
| Q |
207 |
ctcacaatttttgtaggtactattttgaacaaaattactgtcatagccgtagagctcgaaaccattcaattttaaaaaggtagactcacttctattacaa |
306 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||| ||||||| || || ||||| ||||| ||||||||||||||||| | ||||||||| ||| |
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|
| T |
39131484 |
ctcgcaatttttgtaggtactattttcaacaaaattaatgtcataaccataaagctcaaaacctggtaattttaaaaaggtagaatgacttctattgcaa |
39131385 |
T |
|
| Q |
307 |
gtaaaatca |
315 |
Q |
| |
|
||||||||| |
|
|
| T |
39131384 |
gtaaaatca |
39131376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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