View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3567_low_14 (Length: 276)
Name: NF3567_low_14
Description: NF3567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3567_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 2667452 - 2667717
Alignment:
| Q |
1 |
cttgtgataaataacactttaattttctgttcctggttttgtttcgttttctatctcaatctcgtttagttctttgatgtaagctttgtttgtttgctca |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2667452 |
cttgtgataaataatactttaattttctgttcctggttttgtttcgttttctatctcaatctcgtttagttctttgatgtaagctttgtttgtttgctca |
2667551 |
T |
|
| Q |
101 |
ttcattattctatttcgcacgtcgatatatcaagaatgcagtgacattgagtcctcctccagagaggagttcgttggattcggcacctaaatcggaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||| || |
|
|
| T |
2667552 |
ttcattattctatttcgcacgtcgatatatcaagaatgcagtgacattgaatcctcctccatagaggagttcgttggatttggcacctaaatcggaacaa |
2667651 |
T |
|
| Q |
201 |
tttaggtttcatatgttgacgactttgataatgtattccattgattacttcattcaaagccctatg |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2667652 |
tttaggtttcatatgttgacgactttgataatgtattccattgattacttcattcaaagccctatg |
2667717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University